LOCUS       HG796440                1934 bp    DNA     circular ENV 26-JUL-2016
DEFINITION  Uncultured bacterium plasmid pRGI01215.
ACCESSION   HG796440
VERSION     HG796440.1
DBLINK      BioProject: PRJEB5106
KEYWORDS    ENV.
SOURCE      uncultured bacterium
  ORGANISM  uncultured bacterium
            Bacteria; environmental samples.
REFERENCE   1
  AUTHORS   Jorgensen,T.S., Xu,Z., Hansen,M.A., Sorensen,S.J. and Hansen,L.H.
  TITLE     Hundreds of circular novel plasmids and DNA elements identified in a
            rat cecum metamobilome
  JOURNAL   PLoS ONE 9 (2), E87924 (2014)
   PUBMED   24503942
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 69)
  AUTHORS   Joergensen,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-DEC-2013) Microbiology, University of Copenhagen,
            Faculty of Science, Universitetsparken 15, building 1 1st floor,
            2100, DENMARK
COMMENT     Assembly of reads from chromosomal DNA-free metamobilome study Only
            complete predicted genes are annotated.
FEATURES             Location/Qualifiers
     source          1..1934
                     /organism="uncultured bacterium"
                     /mol_type="genomic DNA"
                     /isolation_source="Rattus norvegicus cecum metamobilome"
                     /db_xref="taxon:77133"
                     /environmental_sample=""
                     /plasmid="pRGI01215"
                     /geo_loc_name="Denmark:Copenhagen"
     CDS             join(1017..1934,1..69)
                     /inference="ab initio prediction:Prodigal:2.6"
                     /inference="protein motif:PFAM:PF01446.12"
                     /note="unnamed protein product; ORF3; Pfam family:Rep_1;
                     Pfam description:Replication protein"
                     /codon_start=1
                     /transl_table=11
                     /protein_id="CDL66408.1"
                     /translation="MQNPKLQNLTDYSPSDAPWDAHKSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGETLNRMNMAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPSMFTRDYVKHDRWVELWRECLRVNYDPNVDVRAVKPRKPKDGE
                     SLASATAELVRGAVAETLKYSTKPADMVADPEWFLELTKQTHKRRFVATGGALKDILKL
                     DQETDADMVIGDDIPEGDDDGSRIAFEWKTESKKYRRSPSKDKAESD"
                     /name=""
     CDS             632..727
                     /inference="ab initio prediction:Prodigal:2.6"
                     /note="unnamed protein product; ORF1"
                     /codon_start=1
                     /transl_table=11
                     /protein_id="CDL66406.1"
                     /translation="MFFEVLNHVDSALSVAVSLLALWQFLVAGGR"
                     /name=""
     CDS             728..1030
                     /inference="ab initio prediction:Prodigal:2.6"
                     /note="unnamed protein product; ORF2"
                     /codon_start=1
                     /transl_table=11
                     /protein_id="CDL66407.1"
                     /translation="MAGSIRARSLYLYLRDNSGDKKWHQALRTKASGLICVVEGFGSIL
                     LGVVALKATPATTAIVRGCDHLQKFDSKRQPTGDTAMITRQMSHRPAWDGVHAKP"
                     /name=""
     Typing          complement(1730..1918)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.947"
                     /coverage="98.0"
                     /evalue="1.39e-59"
ORIGIN
        1 tttgagtgga aaaccgaatc caaaaagtac cgtcgctcac cgtcaaaaga taaagctgaa
       61 tcagactgac agggtgtcgg ggcgcagccc tgaccacgac gtttttgaga ggacgccgct
      121 tgtcggcggt actccaaaaa cacatcttgt cctattggtt ctactccgat gcaggatagg
      181 gctaacgccg caaagtgacg tcactcaatt actgagttcg gtttccgaac tcagttggga
      241 caagatgtgt ttttggtaca ccgccatcac gatgtcggtg ccaaaaacga ttcgtcaggg
      301 ctgcgccccg acaccctgcc aacacctcac gcagtcagat taaaatctgc cagcgctcgc
      361 tgtttccgaa atcgtcaaac tctaaatcgt ggggtcccgc tggcttgcca gtgggttccg
      421 atttagtgat tgacgacatt gctgattgaa aaattggctg aggtggttgg attcacgaag
      481 tgaggccaac cacctggaag acggttttta attgtctggt accggataca accagaacga
      541 atggagttgg ttctgtcgtg atgcgaaaaa gtatgggttc gcaaatcaca gactaaatag
      601 atttacccaa ttccattcga gtgaggttgt tatgtttttt gaggttctta atcatgttga
      661 tagtgcgttg agcgttgctg tttcgctcct ggcgttgtgg cagtttttgg tggcgggtgg
      721 gcgttgaatg gctggttcga tccgcgcgcg atccttgtat ttatacttaa gggataactc
      781 tggcgataaa aaatggcatc aagccttgcg taccaaggct tcggggctta tttgcgttgt
      841 agaaggtttt ggaagtattc tgttgggagt ggtcgcctta aaagcgaccc ccgcaacgac
      901 ggccatcgtt cgggggtgtg accacctgca gaaattcgat tcgaagcgac aaccaacagg
      961 tgatacggca atgataacac gtcaaatgag ccatcgccca gcatgggacg gtgtgcatgc
     1021 aaaaccctaa actccagaac ctcacggatt actccccctc agacgcgccc tgggacgctc
     1081 acaaaagcgt ttctgacgac gtaggtggga tttaccttct cgcagccgaa tatgagcgct
     1141 acggggcgcg tatggcttcc tgtggcggtt tactgaggtt tggttggtct accctcaaag
     1201 aaactggaga aactcgcctt aggctacgtg aggcgcattt ctgtcgtgtc cggcactgtc
     1261 ctgtctgcca gtggaggcga tccctgatgt ggcaagcccg tttttatcag tccctgccgc
     1321 gtattgttgc ggattatcca gatgcacgct ggatgttcct gaccctcaca gtgcgaaact
     1381 gcgcgatcgg ggaattgggt gagacactta accgaatgaa catggccttc cagcgactta
     1441 aggatcgcaa agagtttcga cctgttcagg gctggattcg caccacggaa gttacacgtg
     1501 gaagtgacgg tagtgcgcac ccgcactttc acactctgat gatggttcct ccctcaatgt
     1561 tcacgcgaga ttacgttaaa catgaccgct gggtagagct ttggcgagag tgtttgcgtg
     1621 tgaattacga tccgaatgtt gatgttcgag cagtaaaacc ccgcaagcct aaggacggag
     1681 aatcattggc ttctgcaact gcggaacttg tacggggcgc agtggctgaa accctgaaat
     1741 attccacgaa gccggctgac atggttgctg atcctgaatg gttcctcgaa ttgactaagc
     1801 agacacataa gcgccgattt gtggctaccg gtggcgcact caaagacata ctgaaactcg
     1861 atcaggaaac tgatgccgat atggtaatcg gggatgatat tcccgaaggc gatgatgatg
     1921 gttcacgcat tgct
//
