LOCUS       HG796403                2495 bp    DNA     circular ENV 26-JUL-2016
DEFINITION  Uncultured bacterium plasmid pRGI00947.
ACCESSION   HG796403
VERSION     HG796403.1
DBLINK      BioProject: PRJEB5106
KEYWORDS    ENV.
SOURCE      uncultured bacterium
  ORGANISM  uncultured bacterium
            Bacteria; environmental samples.
REFERENCE   1
  AUTHORS   Jorgensen,T.S., Xu,Z., Hansen,M.A., Sorensen,S.J. and Hansen,L.H.
  TITLE     Hundreds of circular novel plasmids and DNA elements identified in a
            rat cecum metamobilome
  JOURNAL   PLoS ONE 9 (2), E87924 (2014)
   PUBMED   24503942
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2455)
  AUTHORS   Joergensen,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-DEC-2013) Microbiology, University of Copenhagen,
            Faculty of Science, Universitetsparken 15, building 1 1st floor,
            2100, DENMARK
COMMENT     Assembly of reads from chromosomal DNA-free metamobilome study Only
            complete predicted genes are annotated.
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="uncultured bacterium"
                     /mol_type="genomic DNA"
                     /isolation_source="Rattus norvegicus cecum metamobilome"
                     /db_xref="taxon:77133"
                     /environmental_sample=""
                     /plasmid="pRGI00947"
                     /geo_loc_name="Denmark:Copenhagen"
     CDS             272..511
                     /inference="ab initio prediction:Prodigal:2.6"
                     /inference="protein motif:PFAM:PF01815.11"
                     /note="unnamed protein product; ORF1; Pfam family:Rop; Pfam
                     description:Rop protein"
                     /codon_start=1
                     /transl_table=11
                     /protein_id="CDL66311.1"
                     /translation="MTPCSFHAKIITRRGKSPVTRQESAALNMAKFIRAQTLLLLERLE
                     QMDLDEAAGCCEHLHDQAEALYAMLNAQIGEENA"
                     /name=""
     CDS             complement(802..1020)
                     /inference="ab initio prediction:Prodigal:2.6"
                     /note="unnamed protein product; ORF2"
                     /codon_start=1
                     /transl_table=11
                     /protein_id="CDL66312.1"
                     /translation="MFGFSSGALMTLSDDERHLLVSVVSVWLRRAGGDAGAMMLDAYRQ
                     ILSETEPAVRTVMLEFLESVRIHYISS"
                     /name=""
     CDS             2228..2455
                     /inference="ab initio prediction:Prodigal:2.6"
                     /inference="protein motif:PFAM:PF06004.7"
                     /note="unnamed protein product; ORF3; Pfam family:DUF903;
                     Pfam description:Bacterial protein of unknown function
                     (DUF903)"
                     /codon_start=1
                     /transl_table=11
                     /protein_id="CDL66313.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name=""
     Typing          complement(559..646)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          1285..1813
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.598"
                     /coverage="88.0"
                     /evalue="0.0"
ORIGIN
        1 ttacctgtgg ttctccgcca aaatcccagc aaattgcatc accaaagcta aaagctttca
       61 gggttgtcta aaaagcacaa gacataagag gaagtgcggt attttataat caagccccca
      121 agaatttacc ataacatccg ttgcccgcac cgcctgagac gcgttcagcg cgttcctgac
      181 gaaaccatga caaaaaccac aacaaaccac cccggaaccc gtcagaaacg cgcctgttaa
      241 attttaacgg catgcatgac tatgcaccag aatgacgcca tgctcttttc acgcaaaaat
      301 catcaccaga cggggaaaat caccagtgac cagacaggaa tccgccgccc tcaatatggc
      361 caaatttatc cgcgcacaga cacttctcct ccttgagcgg ctcgagcaga tggatctgga
      421 tgaggctgcc ggctgctgtg agcacctgca cgatcaggcc gaagcgcttt acgccatgct
      481 gaacgcacag ataggcgagg aaaatgcgtg aaaatcggtg aacgggtgcg caattcagtg
      541 cgcggccgtg aggcgatggc ggggtgtcgg ggcgcagccc tgaccagggt atttgtgatg
      601 ccggcgcgtg cgcggtatta caaatgcaca tcctgtcccg gaacggacac cgggaaacag
      661 caaaaaaaac cgggcggcac gcccggaact caatcaagtt agattagatt actctcactc
      721 gtccataaca gcatcatgga acgacgacca ccgtccgtga cggccgcctc gtttaagtat
      781 ggacagaaat acagaaaatg ctcaggacga aatgtaatga atgcgaacgg attcaagaaa
      841 ttcgagcatg acagtcctta cggccggttc ggtttcagac aaaatctgcc ggtatgcatc
      901 cagcatcatg gctccggcat cccctccggc acgccgtagc cagaccgaaa caacggacac
      961 aagcaggtgt cgctcatcat cactaagagt catcagggct ccggaagaaa aaccaaacat
     1021 ggcttaccta ctgttaacgg caacgcagaa gaaaggttta cagggtagcg ggcagggatg
     1081 aaaaaaaaaa aattgcagtc aggccggaac ggctgctgaa ccggtacagg cgggttccgg
     1141 gcgcagcgcc ggaccagtca cggagcacta gcggagtgta tactggctta agatgtagca
     1201 tggcagtaac acatagcatt aatgccacat aagacaggcg cagaaagtga aagaaaacgc
     1261 gtcaggagaa aatgtgatac agaatatatt ccgcttcctc gctcactgac tcgctccgct
     1321 cggtcgttcg gctgcggcga gcgggacggg cttacggatg gatcagaaat ttcctggggg
     1381 atgccaggaa gatacttaac gaagaaagca taaggccgcg ccaaagccgt ttttccatag
     1441 gctccgcccc cctgacaagc atcacagaat ctgacgctca aatcagtggt ggcgaaaccc
     1501 gatgcggctt aaagatacca ggcgtttccc cctggtggct ccctcgtgct cccccgcatt
     1561 cctgcctttc ggtttaccgg tgtcactccg ctgttatggc cgcggtttct cattccacgc
     1621 ctgacactca gttccgggaa ggcagttcgc tccaggatgg actgtatgca cgaacccccc
     1681 gttcagtccg accgctgcgc cttatccggt aactatcaac ttgagtccaa cccggaaaga
     1741 cacgactaat cgccattggc aacggccatt ggcaaacagg atgtgcgaga gatgtctcaa
     1801 gagttcttga agtggcggcc ttagtgaggc tacactgaaa ggacaaattt ggtgacatgt
     1861 ctcgcacaag actgttacca cggttagggg atctgccagg attacctaac cttcgaaaaa
     1921 ccacctgcca gggtggtttt ttcgtttaca gggcaagaga ttacgcgcgg aaaaaaagga
     1981 tctcaagaag atcctttata aattagacat ccaacctcac aaagaggaat acttaaatca
     2041 tcttggtata tgtatcggcc ggattacatc tcatataagc ctcctccccg cctgacacca
     2101 cactttgacc atagcacctc gcgcctaact cgatatacag cccaccatca agcctctttt
     2161 cacataaaaa atgacctata gttagatggt tagtgaccaa aactgatatg gataaaagga
     2221 gctggctttg aaaaagattt ttgtttcagt gttcgcagcg gcagttgcgc tttcagccct
     2281 caccggctgc acgcgcacaa gctatgccat acacaccaat gacggtcgca ctattgtcag
     2341 cgacggcaaa cctaaagaat cagactcagg cctgcttggc tatacagacg cgaatggtgt
     2401 caaacagcag atcaataaaa ccgacgttaa agaagtctcc gaaattccgc actgagcatc
     2461 ttctccgaaa aaggccgcta atgtggcctt tttct
//
