LOCUS       HG796300                4886 bp    DNA     circular ENV 26-JUL-2016
DEFINITION  Uncultured bacterium plasmid pRGI00316.
ACCESSION   HG796300
VERSION     HG796300.1
DBLINK      BioProject: PRJEB5106
KEYWORDS    ENV.
SOURCE      uncultured bacterium
  ORGANISM  uncultured bacterium
            Bacteria; environmental samples.
REFERENCE   1
  AUTHORS   Jorgensen,T.S., Xu,Z., Hansen,M.A., Sorensen,S.J. and Hansen,L.H.
  TITLE     Hundreds of circular novel plasmids and DNA elements identified in a
            rat cecum metamobilome
  JOURNAL   PLoS ONE 9 (2), E87924 (2014)
   PUBMED   24503942
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4216)
  AUTHORS   Joergensen,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-DEC-2013) Microbiology, University of Copenhagen,
            Faculty of Science, Universitetsparken 15, building 1 1st floor,
            2100, DENMARK
COMMENT     Assembly of reads from chromosomal DNA-free metamobilome study Only
            complete predicted genes are annotated.
FEATURES             Location/Qualifiers
     source          1..4886
                     /organism="uncultured bacterium"
                     /mol_type="genomic DNA"
                     /isolation_source="Rattus norvegicus cecum metamobilome"
                     /db_xref="taxon:77133"
                     /environmental_sample=""
                     /plasmid="pRGI00316"
                     /geo_loc_name="Denmark:Copenhagen"
     CDS             complement(1220..1765)
                     /inference="ab initio prediction:Prodigal:2.6"
                     /note="unnamed protein product; ORF1"
                     /codon_start=1
                     /transl_table=11
                     /protein_id="CDL65909.1"
                     /translation="MASYFPTLEISGKEFDFTHLEPFIMHVNSDMAKKVLKVHVRFTNH
                     CFTKGYEPFYHPEGEPIIYDHSENKRTFCPIRYRLSLALPEIIKRLCDPAEKVYQTSAK
                     RNWTYSITIDDPEGPYHLFFEIRRASRDERHLQDLNVVIESAYPEDRGYGPPSLLGRIG
                     FVGLCGRVFCGKPLATKR"
                     /name=""
     CDS             complement(1769..2365)
                     /inference="ab initio prediction:Prodigal:2.6"
                     /note="unnamed protein product; ORF2"
                     /codon_start=1
                     /transl_table=11
                     /protein_id="CDL65910.1"
                     /translation="MILENIMAKLPLPPLPLPIAPPSTVKNSGSERAKKSGRRTLAAKR
                     KTLLEELWGDELEQLKVWNRHEHDGYTTVPRTLTYISRILDYLGGTGQPLSQTYLALWC
                     RVFDEGFVEIKDKDGFAYEAGFSGQRAVTTWTGRMRKLRDLGFITTKPGTSGEFQYVIL
                     LNPLTVIKELYEGKEKDERYNALVGRMQEVGAKWE"
                     /name=""
     CDS             3624..3785
                     /inference="ab initio prediction:Prodigal:2.6"
                     /inference="protein motif:PFAM:PF01815.11"
                     /note="unnamed protein product; ORF3; Pfam family:Rop; Pfam
                     description:Rop protein"
                     /codon_start=1
                     /transl_table=11
                     /protein_id="CDL65911.1"
                     /translation="MAKFIKGQTLLLLEKLNELELDAEADLCEKLHEDAELLCRTLTIR
                     LDGHQGDL"
                     /name=""
     CDS             3785..4216
                     /inference="ab initio prediction:Prodigal:2.6"
                     /inference="protein motif:PFAM:PF12728.2"
                     /note="unnamed protein product; ORF4; Pfam family:HTH_17;
                     Pfam description:Helix-turn-helix domain"
                     /codon_start=1
                     /transl_table=11
                     /protein_id="CDL65912.1"
                     /translation="MARVSISEAARLACVSRPTIYKLIKSGELSYTSVVKHGKAVKVID
                     TTELIRVFGSLSFDNERDHAVVKFDDRSTGVNSDFLQNLQHQVALLQAENAGLKDAVNA
                     RDEHINSLRQAMQLLEHKQGTADPQHVRAKSWWQFWKFR"
                     /name=""
     Typing          2989..3210
                     /name="rep_cluster_2392"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.067"
                     /coverage="87.0"
                     /evalue="6.509999999999999e-94"
     Typing          complement(4577..4832)
                     /name="Col(MG828)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="86.154"
                     /coverage="99.0"
                     /evalue="3.2100000000000013e-72"
ORIGIN
        1 agtggcaata cgttgtgtgt gccggtatta caattaaaca tcctgtcctg tttcttcagg
       61 tagtatcatg acacagcata tcaactgata aataatccct gtgcagtaca gccgctgttg
      121 cataaaattt cgctctgcgt cgatgttttt ttaatcaaaa attccgcaga taccccggaa
      181 aaacgcgagt ctgttctcat gcctgaaatg cccacacccc acgcaaaact aactttttgc
      241 tgattttctt tttaaatcat gatgttattg ttttaaaaat gtattttctt tttcagattt
      301 atgcaaaagc acgtcgttga cgaccctatg gcgatgctat gacgacccta cttagggtca
      361 gtactgacaa tctttataaa aaacagttaa ttaatgtagg gtcgtcccta ggggcgcgtc
      421 gcatcttttt acaggacacc cctagcagcg cccctagggg tgtcctgtaa aaaatgcttg
      481 gaattcacga actgaaaatg tctgaaaatg tgcctcatgg gcactgtatg cacccaaacc
      541 gttcgccatt cactctcatg catagctatg cagcgagctg aaaacgatcc tgacgcattt
      601 ttctggtttt cactggataa agcatctctt tttgcggtgt ttgcggcaga atcgcgttca
      661 gcgcgtttct gcggtgcgcg taatgagacg ttatggtaaa tactccgaac gctatgagct
      721 gtaaacggta gacctgaaca agctgggtgt aatcatcagc atgtttagcc acagtaagcc
      781 atacggaacg attgctaaaa catcaaaaac gatagataca gaagtctaat ttttttcaat
      841 aaaaacaaat gactatgttt tttctgttgt agcaaaatca tgatgggcta caaggccata
      901 tgtattttat aaagtaactc gaatgctgag ttgttttata aaatacatat ggccttgtaa
      961 attcatgcgg ttaactatgg tttttgtact catggtgctc tatatcattt gaggcgttgc
     1021 attgaattga tggtgctgaa ttgcgtaatt ggttttgtta tattgtttac atcgtagcga
     1081 ctgaccggat gagattgaac gctacccagc agggcaaacc ttgttcctgt gttcgcgcaa
     1141 ggcgaaccta agcaaaagct agtggtgtcc ggaacgatta ccaaagatga aaaaaaggca
     1201 cctttcaggt gctttttttt catcttttag tcgcaagtgg tttcccacaa aataccctac
     1261 cgcataagcc tacaaaacca attcgaccta gtaatgacgg aggcccgtac ccccgatctt
     1321 caggataggc actctcgata acaacattca aatcttgcag atgtctctca tcacgtgagg
     1381 cgcgtcttat ttcaaaaaat aagtgatatg gcccttccgg atcatcaatt gtaatggagt
     1441 aggtccagtt tctctttgcc gatgtttgat acactttttc tgctggatca catagacgtt
     1501 tgataatctc aggtaacgcc aaagataatc tatatctaat tgggcaaaac gttctcttat
     1561 tctcgctatg gtcgtaaatt atcggttctc cttccggatg ataaaaaggc tcataacctt
     1621 ttgtgaaaca atgatttgtg aatctcacat gtacttttaa taccttttta gccatgtcac
     1681 tatttacgtg cataatgaat ggctcaaggt gcgtgaaatc gaactctttt cctgatattt
     1741 ctaacgttgg gaaatagcta gccatgaatt actcccattt agcgccaacc tcctgcatac
     1801 gtcccaccaa tgcgttatac ctttcatctt tttctttacc ttcgtataac tctttaatga
     1861 cagtcagcgg gttaagcaaa attacatatt gaaactcacc tgatgtgcct ggttttgtag
     1921 ttatgaaacc taaatctctt agtttcctca tcctccctgt ccatgtggtt acagctcgct
     1981 gtccgctaaa accagcctca taagcaaatc catctttatc ctttatttcc acaaatcctt
     2041 catcaaatac tctgcaccaa agagccagat atgtttgaga caatggctgg cccgtacctc
     2101 cgaggtaatc gaggatccga ctgatatatg tcagtgttct tggcactgtt gtatacccgt
     2161 catgttcatg gcgattccat accttgagtt gttcaagctc gtctccccat agctcttcta
     2221 acaaagtttt cctttttgca gcaagagttc tccttcctga cttcttcgct ctttctgaac
     2281 cactattttt tactgttgac ggtggcgcta ttggtagtgg cagtggtggc agtggtagct
     2341 tcgccattat attctccaaa atcatttaac atgcggttat tttagttgtt ttttctttta
     2401 aaacaatgac ttgtatgttg ttttgtgtgc aattgtgctg ttgcctatca atctatagac
     2461 atcttatgaa tatctattta ttacatctcg atgtatgagt tgtaataaat acagcatatg
     2521 gtggccttta ttcaatgagt tatgactggt ttctgtgctc gctgtactga atgtgctgat
     2581 atgtgctgaa tgtgctcgct gtgctgaatg gggatgcaag ggggcaaggt aataattttc
     2641 gacagctatt taatacgaag cgaaatggct gctcactgtg ccctgtgtgc gattttttcc
     2701 ggcattagag ggggggggga tggccttggc acttgcttga gtgtgtctga gacgacgtga
     2761 gagtaatgtg tggatgctga ttggggaaat tgacattatt ctgcgttaag cgttttgagt
     2821 tttacgggga gggggcgtac cagtgagcat gaaataaaaa ggttcttctt gagatccttt
     2881 ttttctgcgc gtaatctctt gctctgtaaa cgaaaaaacc accctggcag gtggtttttc
     2941 gaaggttagt taatcctggc agattttcta accgtggtaa cagtcttgtg cgagacatgt
     3001 caccaaatct gtcctttcag tgtagccgga gtaaggccat cacttcaaga actctcgata
     3061 catctctcgc acatcctgtt taccaatggc taccaccact ggcgattttt cgtgtctgtt
     3121 ccgggttgga ctcaagatga tagttaccga aacaacgtgg tagtcgggct gaacgggggg
     3181 ttcttgcata cagcccagct tggagcgaac tgtctaaacg gaacgggacg tggtgattta
     3241 ggtaaggctt ccaccacaac acgtaagccg catggcggga acaggagagc gcaagaggga
     3301 gccaccaggg ggaaacgcct ggtatcttta tagtcctgtc gggtttcgcc accactgatt
     3361 tgagcgtcag attctgtgat gctcgtcagg ggggcggagc ctatggtaaa acgcccaggg
     3421 ggcgtggcct tctcatgctt tttggctgcc ctttccttac gtccatcatc tactctctta
     3481 cctgcttctc cgtaagcccc gtccgctcgc cgcagacaag tgaccgagcg tagcgagcga
     3541 acggtcgagg aagcggaaaa gaaccagagt taacatggag cactgacgct gtgatgacga
     3601 aaccacagaa aactgcgctt aatatggcga agtttattaa ggggcagacc ctgcttttgc
     3661 tggaaaaact taatgaactc gagctcgatg ctgaggcgga cctttgcgaa aagctccatg
     3721 aggatgcgga actactctgt cgcactctga ctattcgtct ggatggtcat cagggggatc
     3781 tataatggcc agggtatcta ttagcgaagc ggcacgcctt gcttgtgtca gtcgtccgac
     3841 tatttacaag ttaattaaat ctggtgagtt aagttacacc tctgttgtaa agcatgggaa
     3901 agctgtaaaa gttattgata ctacagagct tattcgtgtt tttggttctc tttcttttga
     3961 caatgaacgt gaccatgctg ttgtaaaatt tgacgaccgc tcgacaggtg ttaacagtga
     4021 ttttttacag aatttacagc atcaggtagc acttttgcag gcagaaaacg ccgggctgaa
     4081 agatgcagtg aatgcccggg acgaacatat caattcactt cgtcaggcca tgcagctact
     4141 ggagcataag cagggcactg ctgatccgca gcatgtccga gcaaagtctt ggtggcagtt
     4201 ttggaaattc cgttgagcca ttaccacgca tcccagccat agcgttcggt ctgccactca
     4261 gtttggggta atttggaaaa cggaaatttt cccacattaa gagcattgag ttggagtcga
     4321 tattcctgca ttgctctttt gtcgaccgta aaatcgccgc cgattcttgc aaattcaaca
     4381 ctatcaaatg catattcagt ctgagttcaa aactcaaacg taagagatag gtagttattt
     4441 tcaccttccc ctgcgggaag gtgcgcaggg ttttttatcc ttgccgctac ggttccggca
     4501 gagccttgag cgcaacagga aaccgtctgg ggagaccccc attgctgtag cactgacggt
     4561 ctacgaccat ctaccaaccg agtggcttac tgttccgtgc gaattggctt tgcaggggat
     4621 gactcggttc ccagcgacat gaaatcccct agttaggtat cggcgcgcct gacctcctga
     4681 aacgctctgt aagcgttatt cgcgccttcc atgccctgac gggcatctaa aacccgtttc
     4741 acgcgtctga gtgcttttga gcgagtttct ggggctatct gatgactcat tcctgaaaga
     4801 acaacaacgg aatcaccggc aacatgagag agccgtagcg agcattaagc acgttcgcac
     4861 tgatgttgtg ggggaaactc tgacca
//
