LOCUS       CP149529                3882 bp    DNA     circular BCT 02-MAY-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Cerro str. 818 plasmid
            pCFSAN001330_07, complete sequence.
ACCESSION   CP149529
VERSION     CP149529.1
DBLINK      BioProject: PRJNA78409
            BioSample: SAMN01805334
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Cerro str. 818
  ORGANISM  Salmonella enterica subsp. enterica serovar Cerro str. 818
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3882)
  AUTHORS   Timme,R.E., Pettengill,J.B., Allard,M.W., Strain,E., Barrangou,R.,
            Wehnes,C., Van Kessel,J.S., Karns,J.S., Musser,S.M. and Brown,E.W.
  TITLE     Phylogenetic diversity of the enteric pathogen Salmonella enterica
            subsp. enterica inferred from genome-wide reference-free SNP
            characters
  JOURNAL   Genome Biol Evol 5 (11), 2109-2123 (2013)
   PUBMED   24158624
REFERENCE   2  (bases 1 to 3882)
  AUTHORS   Hoffmann,M., Luo,Y. and Balkey,M.
  TITLE     Whole genome PacBio Sequel sequence of Salmonella enterica subsp.
            enterica
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 3882)
  AUTHORS   Strain,E.A., Brown,E., Allard,M.W., Luo,Y. and Timme,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAY-2012) Center for Food Safety and Applied
            Nutrition, United States Food and Drug Administration, 5100 Paint
            Branch Parkway, College Park, MD 20740, USA
REFERENCE   4  (bases 1 to 3882)
  AUTHORS   Hoffmann,M., Luo,Y. and Balkey,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAR-2024) CFSAN, US FDA, 5001 Campus Drive, College
            Park, MD 20740, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 600.0x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/21/2024 16:23:30
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,755
            CDSs (total)                      :: 4,634
            Genes (coding)                    :: 3,593
            CDSs (with protein)               :: 3,593
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 1,041
            CDSs (without protein)            :: 1,041
            Pseudo Genes (ambiguous residues) :: 0 of 1,041
            Pseudo Genes (frameshifted)       :: 966 of 1,041
            Pseudo Genes (incomplete)         :: 94 of 1,041
            Pseudo Genes (internal stop)      :: 31 of 1,041
            Pseudo Genes (multiple problems)  :: 45 of 1,041
            Pseudo Genes (short protein)      :: 1 of 1,041
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            Bacteria and source DNA available from Laasri, Anna
            Anna.Laasri@fda.hhs.gov.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3882
                     /organism="Salmonella enterica subsp. enterica serovar
                     Cerro str. 818"
                     /mol_type="genomic DNA"
                     /strain="818"
                     /serovar="Cerro"
                     /isolation_source="fecal (Bos taurus)"
                     /sub_species="enterica"
                     /db_xref="taxon:1124928"
                     /plasmid="pCFSAN001330_07"
                     /geo_loc_name="USA:PA"
                     /collection_date="2000-09-15"
                     /collected_by="dairy farms, collected by USDA, JoAnn
                     VanKessel"
     Typing          complement(3028..3214)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="85.417"
                     /coverage="87.0"
                     /evalue="2.7100000000000003e-47"
     Typing          3190..3672
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="91.242"
                     /coverage="93.0"
                     /evalue="0.0"
ORIGIN
        1 aagaagttct tcaccttaat gaattgtcta ccactatttt tagactttac tttcctagga
       61 tttttcctaa aaatattttt tttacacttt gtaaccggat gtcacatgca ctcaaaaagg
      121 ggttgtaagc cggaaccgcc gaaatttccg tcacgccagt tccacccctg ccacaagggt
      181 atccaggtca atcaccttgc tgtcactctg aaaggtatag tgtccgttca gcaaaatgtg
      241 tcgccaagct gccggcgata tctgggtaag caccgcgagc gccttggcgt tacctgttgc
      301 ttcgcacttc gttagggaag gtgcgaacaa gtgggtcgca ccttccctaa gagggccagc
      361 tggccctgtt tctattgcac aagtcggtga catacaacct tattgcagca ccaggcgacc
      421 attgaggggc tgcacaggcc tgttgttggg gtggtgcatc accgccttga aggcgtcgat
      481 ctgggcctgg ctcacctgca ccggctcctt catcactagc cagcgcaccc cttccgaaca
      541 gggcggggtg gtcagcgacc cgctgaagcg gtaatagtcc cgcttagcgg gcagcagttg
      601 ctctgccgag accggttcct tgagcccgtg gctctccccc gccttggctg gcagcacctg
      661 ccaggcaagg ctcagggcag cattggcccg acccggttcg aacatcaccg ccaccaccgc
      721 cagctcccct ctgtcgttgg cgtggaccag atgtccctcc aggggatagg atttgccctc
      781 gatgaggttt tcgctggggg cgtggaagtg gaactgcttg agctcaaagc gcatgccatc
      841 gagttctagg gtgctgccgg gggcatagtt gacctgtata gtgtgaccgt tgttgaccag
      901 ggtcttgcca ccagtttgat aatggaactg cagcggggct agtttggcct ccaccatgcc
      961 cgtgaggttg accggtgact gattgctgcc cgcacactgg ccatattccg gggtcaggct
     1021 ggcccatttc gccggaccgg cttcaccgct gtattcccag tgcgtcgtgg cagcgaaggc
     1081 ggtggggctg agcagcaggg cggcgaccaa cagggacttt ctcataatgc atccttatct
     1141 tgattgaaaa gcacgaccat ttcgtgcctt cacggcgacg aaaacggctc cagttattac
     1201 atgtaacaca cctgaagact ccggggctgc atcgtgatag caaatgcctt taattcagca
     1261 tgcagttagc tgacctaagc cttcgatggc actatatggg attccggcgt agaaccccaa
     1321 aaaaaacact tctaaaaatt gcctttttcg cagcctctat gtctgcttta tcaggatgtc
     1381 aatctaacgc ggatcagtat gctgctgacg tttatgatgc tgggcaactg aattcaaagc
     1441 aggaaacaaa aaccgtaaac ataatttctg ttttgccagc taaggttgcc gttgataaca
     1501 cgcaaaacaa gcaagctgcg caaacatttg gggcaattct tggagctgta gccggaggag
     1561 ttgctggtca taatgtcgga agtggtagcg gacttggtac agcagcagga gcggttggag
     1621 gtggtacggt cggcgcagct gctggaacat tagtcaaaga taaatctatc gtagaaggtg
     1681 tttctttgac ttataaagac gggactaagc tatttacatc aacacaagta ggtaagccat
     1741 gtcagttcac cactggttta gctgtcgtca tttcaactaa aaacaatgaa acaagaattc
     1801 agccaaacac gacctgccca gtaaaaaaat aagattgaag cgatgaaaag aatcatttta
     1861 cctctaattc tactttttag cggaaatagc tttgcgaact cactccaaga ccaattgtct
     1921 gcagtagctc aggctgagca acagggaaaa tctgaagaac aaagactaag agatatccag
     1981 caagaaaaga taaatgcggc tgaaagacta gatcgacaac gaagagcaag tgctgttgca
     2041 gaagctaaca ggaaagcagc tatagcttct gcagagaaaa aagctcggcg tgagaaaatt
     2101 gaagctgaag ttaaggccga caaaactaga gatcagggat atgaagatga actaagaagt
     2161 cttgagatcc aaaagcaaaa acttgctctg gctagagaag aagcaagagt taagcgagaa
     2221 aatgagttca tcgaccaaga actaaaaaac aaagccgccc aaacagatgt aattcaatcc
     2281 aatgctgact cgaatagaaa tatgtcagaa ggtggaagag atttaatgaa aagcgaaggg
     2341 aaggctagag aaaaaaaagc tagcggttgg tttaattagt ttaaccctca aagtgaatat
     2401 gactctgagt ctcagggggt gcgggcaagg gatgttattt accataacat tccttgcccg
     2461 caccccctga gaggccctca gcgcggccct gtcgcgtcag ggccgtttcc agcacatttc
     2521 ccagtccata tcccttaaaa aagcccctga tgatttctgc gcgactgcat ggctatgcac
     2581 gcgggtgaat ggcagacgat ttcggagtgt cagcaccact aaaccgccaa aaggcgcaat
     2641 cagcggcgcg gcgcacgtgg acgtgaccag gcaaaatagg actgctgacg ctcatcctca
     2701 cgtaatgcac gctggcggtc ggcgtaacgc tgcgactcaa tctgcgcacg cgctctgttc
     2761 aggacgatat gccggttcgg ctgatttagc tttttgcctg acgctctctc agctgcggca
     2821 atagcatcat caagaaattt tttctctgct ggtgtcaggt ttgtcagtct gttcatagca
     2881 ttctcccgtc agaataactc cgcacagtct gccagacaca gcagaaccga tgaagcgctg
     2941 gcggtggtga aagacagcca gaaacggtga acgggagcgg attttaatcc ggtgacgtga
     3001 gacgttgggc aagccgcagg cgcgtcagtg gttttagcgg gtttcggggc gcagccctga
     3061 accagtcacg tagcgctagc ggagtgtata ctggcttaat atgttaaatc gaagtggtaa
     3121 ttcggggaag tgcttcatgt ggcaggtgaa aaatgcaggt gctaagcgta agtgcaaaat
     3181 gccagtgtcg gtgaaatgac gcctcctcgc tcactcggtc gctacgctcc tgccgtgaga
     3241 ctgcggcggg cgttacgggc ttacagataa cgagagagca gatggagaga agtcagggag
     3301 agctgcgaaa aggatgcggc gttgccgttt ttccataggc tccgcccccc tgacaagcat
     3361 cacgaaatct gacgctcaaa tcagtggtgg cgaaacccga caggactata aagatcccag
     3421 gcgtttcccc ctggtagctc cctcgtgcgc tctcctgttc ctgcctttcg gtttaccggt
     3481 gtcatccgct gttatggccg cggtttctca ttccacgcct gacactcagt tccgggaagg
     3541 cagttcgctc caagctggac tgtatgcacg aaccccccgt tcagtccgac tgctgcgcct
     3601 tacccggtaa ctatcgtctt gagtccaacc cggaaagaca cgccaacgcg ccactggcag
     3661 cagccactgg tagacagaat gtgcgagaga tgtatcgaga gttcttgaag tggtggccag
     3721 actgaggcta cactgaaagg acgaatttgg tggcatgtct cgcgcaagac tgttaccacg
     3781 gttagagaat ctgccaggat taactaacct tcgaaaaacc acctgccagg gtggtttttt
     3841 cgtttacagg gcaaaagatt acgcattgct caaaaagatc tc
//
