LOCUS       CP149528                2647 bp    DNA     circular BCT 02-MAY-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Cerro str. 818 plasmid
            pCFSAN001330_06, complete sequence.
ACCESSION   CP149528
VERSION     CP149528.1
DBLINK      BioProject: PRJNA78409
            BioSample: SAMN01805334
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Cerro str. 818
  ORGANISM  Salmonella enterica subsp. enterica serovar Cerro str. 818
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2647)
  AUTHORS   Timme,R.E., Pettengill,J.B., Allard,M.W., Strain,E., Barrangou,R.,
            Wehnes,C., Van Kessel,J.S., Karns,J.S., Musser,S.M. and Brown,E.W.
  TITLE     Phylogenetic diversity of the enteric pathogen Salmonella enterica
            subsp. enterica inferred from genome-wide reference-free SNP
            characters
  JOURNAL   Genome Biol Evol 5 (11), 2109-2123 (2013)
   PUBMED   24158624
REFERENCE   2  (bases 1 to 2647)
  AUTHORS   Hoffmann,M., Luo,Y. and Balkey,M.
  TITLE     Whole genome PacBio Sequel sequence of Salmonella enterica subsp.
            enterica
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 2647)
  AUTHORS   Strain,E.A., Brown,E., Allard,M.W., Luo,Y. and Timme,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAY-2012) Center for Food Safety and Applied
            Nutrition, United States Food and Drug Administration, 5100 Paint
            Branch Parkway, College Park, MD 20740, USA
REFERENCE   4  (bases 1 to 2647)
  AUTHORS   Hoffmann,M., Luo,Y. and Balkey,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAR-2024) CFSAN, US FDA, 5001 Campus Drive, College
            Park, MD 20740, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 600.0x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/21/2024 16:23:30
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,755
            CDSs (total)                      :: 4,634
            Genes (coding)                    :: 3,593
            CDSs (with protein)               :: 3,593
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 1,041
            CDSs (without protein)            :: 1,041
            Pseudo Genes (ambiguous residues) :: 0 of 1,041
            Pseudo Genes (frameshifted)       :: 966 of 1,041
            Pseudo Genes (incomplete)         :: 94 of 1,041
            Pseudo Genes (internal stop)      :: 31 of 1,041
            Pseudo Genes (multiple problems)  :: 45 of 1,041
            Pseudo Genes (short protein)      :: 1 of 1,041
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            Bacteria and source DNA available from Laasri, Anna
            Anna.Laasri@fda.hhs.gov.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2647
                     /organism="Salmonella enterica subsp. enterica serovar
                     Cerro str. 818"
                     /mol_type="genomic DNA"
                     /strain="818"
                     /serovar="Cerro"
                     /isolation_source="fecal (Bos taurus)"
                     /sub_species="enterica"
                     /db_xref="taxon:1124928"
                     /plasmid="pCFSAN001330_06"
                     /geo_loc_name="USA:PA"
                     /collection_date="2000-09-15"
                     /collected_by="dairy farms, collected by USDA, JoAnn
                     VanKessel"
     Typing          complement(416..497)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.386"
                     /coverage="93.0"
                     /evalue="1.57e-30"
     Typing          2118..2202
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="94.186"
                     /coverage="93.0"
                     /evalue="7.3e-29"
     Typing          2328..2583
                     /name="MOBF"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="94.574"
                     /coverage="89.0"
                     /evalue="2.65e-108"
     Typing          complement(1842..2033)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.446"
                     /coverage="100.0"
                     /evalue="2.86e-91"
ORIGIN
        1 atgggcactg tatgcgccca aaccgatcgc cattcagttt catgcatagt catgcaacgc
       61 gctgaaaacg ttcctgacgc atttttccgg tttaccctgg ggaaaacatc cctttttgcg
      121 gtgttcgcgg cagaatcgcg ttcagcgcgt tttagcggtg cgcgtaacaa gtccttacac
      181 cacgcgcccc accccgcggt cgttcccgtt ccgtacagcc atcgccaccg acgcgccaaa
      241 ttctggcgac cggacagcaa atcattttgc cgtttttgtg ccgcagccgt tccgcgtgat
      301 cgacaaactg gcagtcaggg aatctcacga agtgcgcact tatacaaact tcacttcgtt
      361 tcgtttgtcg tgcggtctgc gacgctcaaa aaaccgagaa acggcgggaa ttttcgggac
      421 aggatgtgta attgtaatac cgtcacacgc gacgctatca caattgccat ctggtcaggg
      481 ctgcgccccg acaccccgcc aacgcctcac ggcccgcgaa aaaaattccg cgtaccgctc
      541 accgttcccg aactcgtcaa acagaaaatc gcggggcccc gcgcctctgg cgtgggttcc
      601 gattttgtga ttgacgacgg cacggggaaa acactgggga tggtggttgg tgtcacggag
      661 tgaggccaac cacctgcaag acggtttttt gttgctgaaa atccagctca aaattcaagc
      721 aaatctcgcg cgcgatcctt gtatttatac ttaagggata actctgggga taaaaaatag
      781 ctacaggcct tgtgtggcaa ggctttgcgg cttatttgcg ttgtagaagg ttttagaagt
      841 attctgtcga aagtggtcgc attaaaagcg acccccgcaa ctgcgctaac agttcggggg
      901 tgtgaccacc tgtaggaatt cgaattggtg acacgacaac acaggtgata tggcaatgat
      961 aacacgtcag atgagccatc gcccacaatc gggtggtgtg catgaaaaat cctgaactcc
     1021 agaacctcac ggactattcc ccctcagatg cgccatggga cgctcacaga agcgcttctg
     1081 acgacgtggg agggatttac ctgcttgcag ctgaatatga gcgttacggg gcgcgtatgg
     1141 cctcctgtgg cggtttactg cgttttgggt ggtctaccct catgggacgc tcacagaagc
     1201 gcttctgacg acgtgggagg gatttacctg cttgcagctg aatatgagcg ttacggggcg
     1261 cgtatggcct cctgtggcgg tttactgcgt tttgggtggt ctaccctcaa ggaaaccgga
     1321 gaaacgcgac tgaggctgcg tgaggcgcat ttctgccgtg tccggcactg tcctgtctgc
     1381 cagtggaggc gctccctgat gtggcaagcc cgtttttatc agtctttgcc gcgtattgtg
     1441 gctgactatc cagacgcacg atggatgttt ctgaccctga ccgtgcgcaa ctgtgcgata
     1501 ggggagctgg gcgagacact gagccgaatg aacatggcct tccagcgact gaaggatcgc
     1561 aaagagtttc gacctgttca gggctggatc cgcacgacgg aggttactcg aggcagcgac
     1621 ggtagcgcac acccgcactt ccataccctg atgatggtgc cgccctcgat gttcacgcgt
     1681 gactatgtca aacatgcgcg ctgggttgaa ttgtggcggg agtgtctgcg ggtggattac
     1741 gacccgagtg ttgatgtccg ggcagtgaaa ccccgcaagc caaaggacgg cgaatcgctg
     1801 gcctgcgcga ccgccgaact ggtgcgcggt gcggtggccg aaaccctgaa atattccacg
     1861 aagccggctg acatggtggc cgatcctgaa tggttccttg aactgactcg ccagacgcac
     1921 aaacgccgct ttgtggcgac cggcggcgca ctcaaagacg tgctgaaact cgatcaggaa
     1981 accgacgccg acatggtgat cggggatgat atttccgagg gcgacgatga cggttcacgc
     2041 atcgcgttcg agtggaaaac cgaggtcaga aagtaccgtc gctcaccgac gaaagataaa
     2101 actgaatcag gctagcgggg tgtcggggtg cacccctgac cagatggcaa ttgtgatagc
     2161 gtcgcgtgtg acggtattac aattgcacat cctgtcctgt ttcaactgat aaataatccc
     2221 tgtgcagtac agccgctgtt gcataaaatt tcgctctgcg tcgagtgttt cttaatcaag
     2281 aattccgctg atactccgga aaaacgcgag tctgttctca tgcctgaaat gcccacaccc
     2341 cacgcaaaaa caattttttg ctgatttttc tttataaata gagagttatg acaaattagt
     2401 ttctcttgct ctctttgtga tatttaaaaa agcggtgtcg gcgcggtgtt gtagctgcgc
     2461 cgacaccgct ttgtaggggt ggtactgact attttcataa aaaacataat tttatattag
     2521 gggtgctgct agcggcgcgg tgtgtttttt tacaggacgc ccctgggggc gctgctaggg
     2581 gtgtctgttc agatatgtag caatgagtca gggattcacg aattgaaaat gtccgaaaat
     2641 atgtctc
//
