LOCUS       CP149527                3006 bp    DNA     circular BCT 02-MAY-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Cerro str. 818 plasmid
            pCFSAN001330_05, complete sequence.
ACCESSION   CP149527
VERSION     CP149527.1
DBLINK      BioProject: PRJNA78409
            BioSample: SAMN01805334
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Cerro str. 818
  ORGANISM  Salmonella enterica subsp. enterica serovar Cerro str. 818
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3006)
  AUTHORS   Timme,R.E., Pettengill,J.B., Allard,M.W., Strain,E., Barrangou,R.,
            Wehnes,C., Van Kessel,J.S., Karns,J.S., Musser,S.M. and Brown,E.W.
  TITLE     Phylogenetic diversity of the enteric pathogen Salmonella enterica
            subsp. enterica inferred from genome-wide reference-free SNP
            characters
  JOURNAL   Genome Biol Evol 5 (11), 2109-2123 (2013)
   PUBMED   24158624
REFERENCE   2  (bases 1 to 3006)
  AUTHORS   Hoffmann,M., Luo,Y. and Balkey,M.
  TITLE     Whole genome PacBio Sequel sequence of Salmonella enterica subsp.
            enterica
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 3006)
  AUTHORS   Strain,E.A., Brown,E., Allard,M.W., Luo,Y. and Timme,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAY-2012) Center for Food Safety and Applied
            Nutrition, United States Food and Drug Administration, 5100 Paint
            Branch Parkway, College Park, MD 20740, USA
REFERENCE   4  (bases 1 to 3006)
  AUTHORS   Hoffmann,M., Luo,Y. and Balkey,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAR-2024) CFSAN, US FDA, 5001 Campus Drive, College
            Park, MD 20740, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 600.0x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/21/2024 16:23:30
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,755
            CDSs (total)                      :: 4,634
            Genes (coding)                    :: 3,593
            CDSs (with protein)               :: 3,593
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 1,041
            CDSs (without protein)            :: 1,041
            Pseudo Genes (ambiguous residues) :: 0 of 1,041
            Pseudo Genes (frameshifted)       :: 966 of 1,041
            Pseudo Genes (incomplete)         :: 94 of 1,041
            Pseudo Genes (internal stop)      :: 31 of 1,041
            Pseudo Genes (multiple problems)  :: 45 of 1,041
            Pseudo Genes (short protein)      :: 1 of 1,041
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            Bacteria and source DNA available from Laasri, Anna
            Anna.Laasri@fda.hhs.gov.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3006
                     /organism="Salmonella enterica subsp. enterica serovar
                     Cerro str. 818"
                     /mol_type="genomic DNA"
                     /strain="818"
                     /serovar="Cerro"
                     /isolation_source="fecal (Bos taurus)"
                     /sub_species="enterica"
                     /db_xref="taxon:1124928"
                     /plasmid="pCFSAN001330_05"
                     /geo_loc_name="USA:PA"
                     /collection_date="2000-09-15"
                     /collected_by="dairy farms, collected by USDA, JoAnn
                     VanKessel"
     Typing          2301..2527
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="91.25"
                     /coverage="99.0"
                     /evalue="2.24e-83"
     Typing          complement(1511..2040)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.6"
                     /coverage="97.0"
                     /evalue="0.0"
     Typing          2537..2856
                     /name="MOBF"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="98.131"
                     /coverage="100.0"
                     /evalue="4.93e-62"
ORIGIN
        1 ttttgcggtg tctgcgtcag aatcgcgttc agcgcgtttt ggcggtgcgc gtaatgagat
       61 gttatggtaa atggtgtcag gtaacggttg taaaagcccc gaagtatggg gctggtgtgc
      121 ttgtgtgtta tttgtttttt ttatttgtgt ttttgtctgt gttatttttt tgttccatat
      181 ataaaaccac ctatcgctcc aactaatgtt gtcattagtg ccatcaggtt atttgcaaaa
      241 tctggtagtt ctctatcttt tattccgaaa taaacgatta acataaaaat tgataaaact
      301 attaaaaata taaaggccat ggagcaaagc cttataagac cttcgctttc agcctttatt
      361 tctttttctg ttttcggtct gtggtttttt atcatttcct ctatttgaga tcttaaaatg
      421 aatccaggct gtgagtttgt gtcacttcct gatttcgcat tatttatatt gctacttgtt
      481 tttgagaatg atggttctac acgaatgtat tcaatcgcat ctgtttttgg tttgaaaaat
      541 ttcataatcc actcacatcc tcaacatgct tggagttata agcaatggat ttttctttaa
      601 atagggctaa ggttaaccct tcgtcaagtg gtgtgttatt atcggttgag ttgtagtcaa
      661 gttgaactat caccgcattt ccattgtagt ttctgtgcgg ttacttgtcc ttggcttaaa
      721 ttgatgacat tgtttatttg tatatttttg aatgtatcgc ggttatttat tcttattgtt
      781 atttcatcta aatttctttt gttttcgttt aaatacagat cagctattag ttgagatgga
      841 tttttatgtg ggatgtaata gttaccaact aggccgattc ttacgactcc atatttttgg
      901 aatattgttg ctattagcgt attgcacttt aatttgaatt ccgttactga tttttcgatc
      961 tcctcagtag gggtgtagtt ttctacaaaa tctattctgt ttagtgatat gtttaagttg
     1021 aacttgccaa aggacgatgt gccaataacg cgagggatat ctgcaggtgc atctgcaggc
     1081 aggggaagcg tctgtggcat tgcgtctata acttcgccaa tttctgagtt taggctatta
     1141 aagagaagat ctggtctagc tatggtgctg tcaataaata ttgctagctg tgttgatatt
     1201 gtgacggcct tgttttccat tttttctttc ctattttgca ttggtattaa ttgaagtatt
     1261 gcgaaattaa cgtgttgtga gtatcttaaa cgaaaaaacc accctggcag gtggtttttc
     1321 gaaggttagc taatcctggc agattgtcta accgggtaac tggcttcagc agagcgcaga
     1381 taccaaatac tgtccttcta gtgtagccgt agtcaggcca tcacttcaag aactctgtaa
     1441 gcatctggac aaatctcgct ctgctaactc ggttaccaat ggctgctgcc agtggtgctt
     1501 ttgcatgtct taccgggttg gactcaagac gatagttacc ggataaggcg cagtggtcgg
     1561 gctgaacggg gggttcgtgc acacagccca gcttggagcg aacgacctac accgggccga
     1621 gatacctaca gcgtgagcta tgagaaagcg ccacgcttcc cgaagggaga aaggcggaca
     1681 ggtatccggt aagcggcagg gtcggaacag gagagcgcac gagggagctt ccagggggaa
     1741 acgcctggta tctttatagt cctgtcgggt ttcgccacct ctgacttgag cgtcgatttt
     1801 tgtgatgctc gtcagggggg cggagcctat ggaaaaacgc ctgcggtgct ggcttcttcc
     1861 ggtgctttgc tttttgctca catgttcttt ccggctttat cccctgattc tgtggataac
     1921 cgtattaccg cctttgagtg cgctgacacc gctcgccgca gtcgaacgac cgagcgtagc
     1981 gagtcagtga gcgaggaagc ggaagagcgc cttatgtgac attttctcct tacgctctgt
     2041 tgtgccgttc ggcatcctgc cctgagcgtt atatctctgt gctattttct acttcaaagc
     2101 gtgtctgtat gctgttctgg agttcttctg cgagttcgtg cagcttctca cacatggtgg
     2161 cctgctcgtc agcatcgagt gcgtccagtt tttcgagcag cgtcaggctc tggcttttta
     2221 tgaatcccgc catgttgagt acagtttgct gctgcttgtt catctttctg ttttctccgt
     2281 tctgtctgtc atctgcgtcg tgtgattata tcgcgcacca cttttggacc gtcttaccgc
     2341 cggtattctg ccgacggaca tttcagtcag acaacactgt cactgccaaa aaactgccgt
     2401 gcctttgtcg gtaattcgag cttgctgaca ggacaggatg tgtaattgtt ataccgcgca
     2461 tacatgcacg ctattacaat taccctggtc agggctttgc cccgacaccc catgtcagat
     2521 acggagccat gttttatgac aaaacgaagt ggaagtaata cgcgcaggcg ggctatcagt
     2581 cgccctgttc gtctgacggc agaagaagac caggaaatca gaaaaagggc tgctgaatgc
     2641 ggcaagaccg tttccggttt tttacgggcg gcagctctcg gtaagaaagt taactcactg
     2701 actgatgatc gggtactgaa agaagttatg agactggggg cgttacagaa aaaactcttt
     2761 atcgacggca agcgtgtcgg ggatagggaa tatgcggagg tgctgatcgc tattacggag
     2821 tatcaccgtg ccctgttatc caagcttatg gcagattagc ttcccgggga gaaaactgtc
     2881 gaaaacagac ggtatgaaca ccgtaagccc ccaaaccgat cgccattcac tttcatgcat
     2941 agctatgcag tgagctgaaa gcaatcctga cgcatttttc cggtttaccc cggggaaaac
     3001 atctct
//
