LOCUS       CP149525                4077 bp    DNA     circular BCT 02-MAY-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Cerro str. 818 plasmid
            pCFSAN001330_03, complete sequence.
ACCESSION   CP149525
VERSION     CP149525.1
DBLINK      BioProject: PRJNA78409
            BioSample: SAMN01805334
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Cerro str. 818
  ORGANISM  Salmonella enterica subsp. enterica serovar Cerro str. 818
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4077)
  AUTHORS   Timme,R.E., Pettengill,J.B., Allard,M.W., Strain,E., Barrangou,R.,
            Wehnes,C., Van Kessel,J.S., Karns,J.S., Musser,S.M. and Brown,E.W.
  TITLE     Phylogenetic diversity of the enteric pathogen Salmonella enterica
            subsp. enterica inferred from genome-wide reference-free SNP
            characters
  JOURNAL   Genome Biol Evol 5 (11), 2109-2123 (2013)
   PUBMED   24158624
REFERENCE   2  (bases 1 to 4077)
  AUTHORS   Hoffmann,M., Luo,Y. and Balkey,M.
  TITLE     Whole genome PacBio Sequel sequence of Salmonella enterica subsp.
            enterica
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 4077)
  AUTHORS   Strain,E.A., Brown,E., Allard,M.W., Luo,Y. and Timme,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAY-2012) Center for Food Safety and Applied
            Nutrition, United States Food and Drug Administration, 5100 Paint
            Branch Parkway, College Park, MD 20740, USA
REFERENCE   4  (bases 1 to 4077)
  AUTHORS   Hoffmann,M., Luo,Y. and Balkey,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAR-2024) CFSAN, US FDA, 5001 Campus Drive, College
            Park, MD 20740, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 600.0x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/21/2024 16:23:30
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,755
            CDSs (total)                      :: 4,634
            Genes (coding)                    :: 3,593
            CDSs (with protein)               :: 3,593
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 1,041
            CDSs (without protein)            :: 1,041
            Pseudo Genes (ambiguous residues) :: 0 of 1,041
            Pseudo Genes (frameshifted)       :: 966 of 1,041
            Pseudo Genes (incomplete)         :: 94 of 1,041
            Pseudo Genes (internal stop)      :: 31 of 1,041
            Pseudo Genes (multiple problems)  :: 45 of 1,041
            Pseudo Genes (short protein)      :: 1 of 1,041
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            Bacteria and source DNA available from Laasri, Anna
            Anna.Laasri@fda.hhs.gov.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4077
                     /organism="Salmonella enterica subsp. enterica serovar
                     Cerro str. 818"
                     /mol_type="genomic DNA"
                     /strain="818"
                     /serovar="Cerro"
                     /isolation_source="fecal (Bos taurus)"
                     /sub_species="enterica"
                     /db_xref="taxon:1124928"
                     /plasmid="pCFSAN001330_03"
                     /geo_loc_name="USA:PA"
                     /collection_date="2000-09-15"
                     /collected_by="dairy farms, collected by USDA, JoAnn
                     VanKessel"
     Typing          complement(2930..3102)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.103"
                     /coverage="100.0"
                     /evalue="9.410000000000001e-66"
     Typing          3027..3571
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.727"
                     /coverage="90.0"
                     /evalue="0.0"
ORIGIN
        1 aatggattgc aaagcggtag ctctggaaat cgcaaaaacg cgcagtgtac aacaagaaat
       61 tgaggcaacc ggcgaatttg acgggcgcac cgtattaggt ttcctgggtg attttgggat
      121 aggaaatggc ttgacatcct cccccacctt cgcacttcgt gactcaggag ggggattccc
      181 attagtgggt gacggctgat tgctcagcgt ctggttcctg cttcaacggg cggtctgact
      241 gcatcgtccc tccacaggca agtacggcgt gccccgccgc taaaatgtta cgagcgccat
      301 ttacatcggc gttcgctgta tatccacata cctggcatct gaattgactt tgtgacaggc
      361 ggttttcttt cgctgtatga ccacagcacg cgcaacgctg gcttgtgtac gctggcggaa
      421 cagcaagcac ctgacctcca cgccagagct gtttgtactc aagctggcgg cgcatttcat
      481 accagccctg atccagtatc gaacggttta aacctgattt tgcccggaca ttgcgccccg
      541 gctggctgac cgtacccgct gctgactttg acatgttgct gaccttcaaa tcctcaatga
      601 ctatcattgc gtggtttttg ctgacggtcg ttgtgacttt atgaaggtag tctctgcgga
      661 tatttgcgat acgggaatgc agacactgta ttttgcgttt ctgcttctgc cagttgttgc
      721 tgaatttgac cttgcggctt aactgtcgct gaagtctcgc cagcttcttc tggtttttct
      781 gaaaactgtt tacaggttca aagactgtgc catctgacag cgtggcgagt ttagccacgc
      841 cagcatccag accgactatc gttgtgcttg tgtgatttgg ttctgccgtt tcaatttcaa
      901 cctgaaacga gatataccac tgtcccgcta actgactgat tgtcgcattt ttgattttac
      961 cgttcacacg ttgagattgc cggaatttta cccacccaag acctgacggt agcttcactc
     1021 tgcgattttc aaggcagcaa tatttctcaa agttcacaaa acggattgag tctctgccct
     1081 cattttttcg tttccatacc ggagccttag ctgcgagctt tttatcaaaa caacgtttcc
     1141 atgcggtatg caggtctttc agcttttgtt gcagattgtc ggtataggca tcctgtaaga
     1201 agatgtattc cggcattttt ttccacactg taatcatccg gttcaactcg aaagccgaag
     1261 gtaacttttc gcctgagtca agtatgcgct ttgtctccgc aagacctaaa ttccagacaa
     1321 aacgggcgca accgcataac tgccgcaaac gctgcgactg ttcaggcgtt ggttccagtc
     1381 tgaatttgta ggctttcagg attagcatca tcattcagtg tgtagtagat tttcttgcaa
     1441 tattactgct tttacggcca acctcaatgc aaaaatataa aatcaatcgt tcaagacatg
     1501 ctgccttcct tttgcatgtt catcttgtct ttgtaacaaa ataccgtcga aagatactgg
     1561 gagagttaca ctgtgcagca tttcatcagt atgcagcaga agtctgccgt gattttgggg
     1621 cagaacttaa agaaagtaac ggagacgtcg atcatgtcca catgctgatc gaatacccac
     1681 caacagtgca gctttcggta ctggttaact cactgaaagc agtgacatcc cgccgtctgc
     1741 gaaacgaatt tcttgatttg cggggggcat acggaaaagc cgtgctctgg tctaggtcat
     1801 actttgctgg ctcctgcgga ggtgcgccgc tggaagttgt taggcaatac attcaacatc
     1861 agcgtggctg atcacccttc gggcttttca agcccgtcca aattcccctc ccgccttatg
     1921 tcggcgggag taccctttgg aagttaagat ggcaaaaggc gaagcccgca aaaaagcagc
     1981 taaccggcta aatcagctgg aagccctgaa ggctgcaaag tgtgcagatc aataaggtac
     2041 aaaaaagccc tgcggggctt tttttgtacc tgccaatcag ctggatttac cataacatcc
     2101 gttgcccgca ccacctcagg cgccctcagg gcgtttctga ggactccggc ctgaaacata
     2161 cacctttctg tgcccatatc gagaaaaaac gcccctgatg atttctgcgt acctgcatgg
     2221 ctatgcactc aagtgaatga agtaagattt cagtctgcga tcaccataaa accgggaaaa
     2281 agccgtatga caaaacagga atcagccgca ctgaacatgg caaaatttat ccgggcgcag
     2341 tcgctgctgc tgctcgaaaa actcgacgtg ctcgatcttg atgacgaggc agccgactgt
     2401 gagcgaatgc acgaacaggc agaagcgctt tatcagaagc tgagcgcacg cttcggtata
     2461 caggacggcg aataaagaga cgaaaagaac gctcacttag acgaaaagcg tatccagggc
     2521 aactatgtat atccaccgtg tacatagtca tgcctgacgc tttcgagcag gtcgagcatg
     2581 caggaacgac gagcttgatt ggtatcggac acaatatggc gatacgcctc aaacataaca
     2641 gcacccgcat caccgcccga acggcgaagc atagcggaaa tcatccgcac aaagagcaga
     2701 cgttcatcgg ggcaaagatt cacaaggtct cctggtgaaa aaccaaacat aaaagcaccc
     2761 ctctattaac gtcagctgtg aacgcttcat tagaagaaaa taggtaaacc cgggaaaaag
     2821 atccaaacgt taacatcaca ggtaaacaga aacgtcgggt cgatcgggaa attctttccc
     2881 ggacggcgcg gggttgggca agccgcaggc gcgtcagtgc ttttagcggg tgtcggggcg
     2941 cagccctgaa ccagtcatgt agcgctagcg gagtgtatac tggcttacta tgtaggcacg
     3001 gatgtggaaa tcagtgaagt gcttcatgtg gcaggagaaa aatgcagcag cggagcgtaa
     3061 gcagaatatg caatgcaggt gatgttccgc ttcctcgctc actgactcgc tgcgctcggt
     3121 cgttcggctg cggcgagcgg taccggctta ctggcggggc agaaatttcc tggaagatgc
     3181 caggacgaaa cttaacgggg aagcgataag gccgcggcga agccgttttt ccataggctc
     3241 cgcccccctg acaagcatca cgaaatctga cgctcaaatc agtggtggcg aaacccgaca
     3301 ggacttaaag ataccaggcg tttccccctg gtggctccct cgtgcgctct cctgttcctg
     3361 cctttcggtt taccggtgtc attccgctgt tatggccgcg gtttctcatt ccacgcctga
     3421 cactcggttc cgggaaggca gttcgctcca agctggactg tatgcacgaa ccccccgttc
     3481 agtccgactg ctgcgcctta tccggtaact atcgtcttga gtccaacccg gaaagacacg
     3541 acaaagcgcc actggcagca gccactggta acaggattag cagagcgagt taatgtagat
     3601 ggtgctatag agttcttgaa gtggtggcct gactacggct acactggaag gacagtattt
     3661 ggtatctgcg ctctgctgaa gccagttacc aggttaagca gttccccaac tgacttaacc
     3721 ttcgaaaaac cacctcccca ggtggttttt tcgttttcag agcaagagat tacgcgtaga
     3781 aaaaaaggaa ctcaagaaga tcctttctat gctcaaccac cgcatggccc atagccgcgc
     3841 tggccgttgc cggtcagctc cagaatcctc gaccaatatg gaaccttgcc cctcccaaaa
     3901 ttcaactaaa aaaccctcat ttcctgccaa taaaatgggt atctcttaac tatgcctaaa
     3961 taaaataagg ataattttga aaaaaatatt catcctatcg gcagcgctga tcatggcagg
     4021 atgcgcaaca aagcaatatc cacaggccgc gaacgtcacc ggtccagaat cttccgc
//
