LOCUS       CP148889                4904 bp    DNA     circular BCT 25-MAR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Infantis strain
            Z1322HSL0007 plasmid pZ1322HSL0007-4, complete sequence.
ACCESSION   CP148889
VERSION     CP148889.1
DBLINK      BioProject: PRJNA1087122
            BioSample: SAMN40424038
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Infantis
  ORGANISM  Salmonella enterica subsp. enterica serovar Infantis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4904)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Salmonella enterica subsp. enterica
            serovar Infantis isolated from humans, companion and industrial
            animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4904)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 130X
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/19/2024 14:49:04
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,966
            CDSs (total)                      :: 4,847
            Genes (coding)                    :: 3,516
            CDSs (with protein)               :: 3,516
            Genes (RNA)                       :: 119
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 1,331
            CDSs (without protein)            :: 1,331
            Pseudo Genes (ambiguous residues) :: 0 of 1,331
            Pseudo Genes (frameshifted)       :: 1,164 of 1,331
            Pseudo Genes (incomplete)         :: 146 of 1,331
            Pseudo Genes (internal stop)      :: 148 of 1,331
            Pseudo Genes (multiple problems)  :: 115 of 1,331
            Pseudo Genes (short protein)      :: 1 of 1,331
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4904
                     /organism="Salmonella enterica subsp. enterica serovar
                     Infantis"
                     /mol_type="genomic DNA"
                     /strain="Z1322HSL0007"
                     /serovar="Infantis"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:595"
                     /plasmid="pZ1322HSL0007-4"
                     /geo_loc_name="South Korea"
                     /collection_date="2022-04-28"
     gene            complement(6..503)
                     /locus_tag="WI231_24790"
                     /pseudo=""
     CDS             complement(6..503)
                     /locus_tag="WI231_24790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067073.1"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /name="replication protein"
     gene            complement(496..642)
                     /locus_tag="WI231_24795"
     CDS             complement(496..642)
                     /locus_tag="WI231_24795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2740 family protein"
                     /protein_id="WXT72557.1"
                     /translation="MPKQLSPDQDKLHKNILRDRFLSSFKQPGRFRAELEKVKLILKRK
                     GHE"
                     /name="DUF2740 family protein"
     gene            complement(675..971)
                     /locus_tag="WI231_24800"
     CDS             complement(675..971)
                     /locus_tag="WI231_24800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0003677 - DNA binding [Evidence IEA]; GO_process:
                     GO:0006355 - regulation of DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CII family transcriptional regulator"
                     /protein_id="WXT72558.1"
                     /translation="MTQASYSKPTQREIDRAETDLLINLSTLTQRGLAKMIGCHESKIS
                     RTDWRFIASVLCAFGMASDISPISRAFKYALDEITKKKSPAATEDFKQIDMQF"
                     /name="CII family transcriptional regulator"
     gene            complement(1122..1355)
                     /locus_tag="WI231_24805"
     CDS             complement(1122..1355)
                     /locus_tag="WI231_24805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000102594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="WXT72559.1"
                     /translation="MNNELLRWRKDATSAEWVRLAELANTTVGYLDQIAYGYRRASPEK
                     ALAIEVASKVFKKHMPVLKESLVFATTRNSAA"
                     /name="transcriptional regulator"
     gene            1396..2148
                     /locus_tag="WI231_24810"
     CDS             1396..2148
                     /locus_tag="WI231_24810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015705908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="WXT72560.1"
                     /translation="MLNTKQASFSNLHIYRIAKECETQGMENKEIRKANLEALYEERKR
                     STGMTKAQFAELIDTSPAALSQLLGENPNRNIGDKLARKIENALGLSFGWLDVLHSKEN
                     TGNVAFRGMNDTKGSYPVISWISAGQWMEAVEPYHRRSIDRWYDTTVVCSEDSFWLDVK
                     GDSMTSPVGLSIPEGAAILVDPEVEPRNGKLVVAKLDGDNEATFKKLVIDAGRRFLKPL
                     NPQYPMQEINGNCRIIGVVVDAKILNLP"
                     /name="LexA family transcriptional regulator"
     gene            2977..3510
                     /locus_tag="WI231_24815"
     CDS             2977..3510
                     /locus_tag="WI231_24815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001535909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="WXT72554.1"
                     /translation="MDLTQVSVREILHYNPVSGDFYWKPRAKHLFADNRAALTWNKKYP
                     GKKAGSPDNKGYLRINIGGKKFKSHRLAWLYVHGYWPDVIDHINGVKDDNRISNLRSVS
                     FKENMKNMPLKSSSSTGVTGVEARKEHGFYVASITVDGKRKYLGSFKLLDDAKQARKEA
                     NALYGFHENHGRSQ"
                     /name="HNH endonuclease"
     gene            3512..3640
                     /locus_tag="WI231_24820"
                     /pseudo=""
     CDS             3512..3640
                     /locus_tag="WI231_24820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016063037.1"
                     /note="frameshifted; incomplete; partial on complete
                     genome; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="regulator"
                     /name="regulator"
     gene            3714..4433
                     /locus_tag="WI231_24825"
     CDS             3714..4433
                     /locus_tag="WI231_24825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016023187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="WXT72555.1"
                     /translation="MNSADLSKILEEHKVWITSMRESGSRANLRDANLRDANLRGANLR
                     DANLRGADLRGANLRDANLRDANLCGANLCGANLRGANLRDADLRDANLRDANLCGANL
                     CGANLRGANLRDADLRDANLCGADLRGANLRDANLRGADLRGANLRDANLPDLTFVILG
                     EKYFISITNGEYVRAGCQNHTVEEWRKYSKQEIAEMDGRKALKFYPRLLDIIDFYIGKG
                     ERPDWLTSKEYADEVTE"
                     /name="pentapeptide repeat-containing protein"
     gene            4746..4871
                     /locus_tag="WI231_24830"
     CDS             4746..4871
                     /locus_tag="WI231_24830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000405108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WXT72556.1"
                     /translation="MEINKEQASEIIKLIEQALLDGFDDEILVSLHESLTKFVSE"
                     /name="hypothetical protein"
ORIGIN
        1 ttgccgccac cgttaggggg taagggggta tttgtattta ttgtcttttg tatattgtct
       61 tttgtgtttg actgattcgg taaattggtt tttaccgatt tggtgaaggt tagttttacc
      121 gatctggtaa atgttttacc gaatccgtta accttcgtct tccactcgga aatattttta
      181 ttcataccaa cctgacgccc cacctgagtg agaaccccca ttctgataag ctcgtttttg
      241 gcggtagaac atttggttgg cgccatgcca gtgagttcag cgaactgttc atttccgatc
      301 caatctattt ttttgttata accgtatgtc ttgcgccaca cagccataac aatcagtagc
      361 tgatgttgag taagcccaga aagcatgaca gcttccagca gtgtatttgc agtccgggtg
      421 tagccatcgt cgagttctgc cacgcgatgc tccacaacct ccagatgagg ttttatcggt
      481 gtaactgttg caagattact catgaccttt cctcttcagt attagcttca ctttctccaa
      541 ctcagcccga aatcgaccag gctgtttgaa gctggataag aaccgatcac gtagtatgtt
      601 tttgtgtaat ttgtcctggt caggactgag ttgttttggc ataattactc ctgtggattg
      661 atccagtaat tccctcagaa ttgcatatca atttgcttaa aatcctcggt ggcagccggg
      721 gattttttct ttgtgatttc atcaagcgca tacttaaaag ccctgctaat cggactgatg
      781 tctgatgcca ttccgaaagc acacaagacc gaagcaataa atctccagtc cgttctgctt
      841 atcttagatt catgacagcc aatcatcttt gccagaccgc gctgggtaag cgttgacagg
      901 ttgatgagta aatcagtttc agcgcgatca atttctcgct gtgttggctt gctgtaactt
      961 gcttgtgtca tttcttacta tctccatagg taaataattt gggtttttat cgtgcaccat
     1021 tgacagtcat ccttgaccac gccgggcacc cgaccatata ccgggccgtt cggttatcaa
     1081 aagttgctca ctggttactt gccgcctgaa ggcgacaggg ttcatgctgc gctgttacgg
     1141 gtggtcgcaa agaccaggct ttctttcagt actggcatgt gctttttgaa aaccttgctt
     1201 gccacttcga tcgccagtgc cttctctgga gaagccctgc ggtatccgta agcaatctgg
     1261 tctaaatagc caaccgttgt gttggctagt tctgccaacc gcacccactc agcggaagtc
     1321 gcatcctttc gccagcggag taattcgttg ttcataggtt gctccgggtt aacgttacaa
     1381 ttggagttta gcgttatgct aaatactaag caagcatcat ttagcaattt gcacatttat
     1441 cgcattgcta aagaatgcga gactcaggga atggaaaaca aagaaatcag aaaagccaac
     1501 ctagaggctt tgtacgaaga gcggaaacgt tcgactggaa tgactaaggc acagttcgct
     1561 gaactcatag acaccagtcc tgccgccctg agtcagcttc taggagaaaa cccgaatcgc
     1621 aacatcgggg ataagctggc tagaaaaatt gaaaatgctt tgggtctgtc attcggttgg
     1681 ctggatgttt tgcactccaa agaaaacacg ggtaacgttg catttcgagg gatgaacgac
     1741 acgaaaggaa gttatcctgt aatcagttgg ataagcgcgg ggcaatggat ggaagctgta
     1801 gaaccttatc atcgcagatc aatagatcgc tggtatgaca ccactgtggt gtgctcagag
     1861 gattcattct ggctggatgt taagggggac tctatgacat cccctgttgg cctgagtatt
     1921 ccagagggtg cggcaattct tgttgatccg gaagtcgagc cacggaacgg aaagcttgtt
     1981 gtcgctaagc ttgacggaga caatgaggcc actttcaaga agcttgtcat agacgctggc
     2041 cgccgattcc ttaaaccgct taacccgcag tatcccatgc aagaaataaa tggtaattgc
     2101 cggatcattg gcgttgtagt agacgcgaag attctcaact tgccgtaaag actcacgata
     2161 ttccccctaa gcccgccaat gagcgggctt ttttttgctt ttcgttttct acaccacctc
     2221 aatgctaaaa attaattcct ttattaatca aaaagctaaa cttcacgcgc cagtaattta
     2281 gcattttgct attgccaatg atttagcatc acgctaaatt taacccatcg agacagcaca
     2341 tcgtttcggt cagtcgaacg gcgcgacagt aaaccatgcg tcggccccat ggcgagccaa
     2401 tggacggttc caatatgcgg gattgcttaa cctgatgttt tctttttaga gagatcaaca
     2461 tgttaagtga ttgcatagag cataaccaaa aacaaaatta cggtaccact tcaactcgaa
     2521 tcaacggtaa gacagtggcg ataaggcttc acaggaaagc ctactgcgaa tcagtcggtg
     2581 tctctattga gagcattaaa ggacgtgtag tgctgcatat gtgtgataac ccgcgatgca
     2641 tcaacccaga gcatttggtg cttggtactc agttggaaaa cgtaagggat atggaaatta
     2701 aagggagagg aaatcacgtc tctggagaga gaaacggttc cgcgaaactt accgcagaag
     2761 atgttcttga aatacgaagc tccacgctga gtaacaggaa aatagcagcc atctatggac
     2821 tgtctgattc gtacattagt tcaattaggc ttcgcaagaa gtggaaacac atatagcccg
     2881 cctaggcggg ttcaggatga acggcaatgc tgctcactac aaaagaacat ttccataacc
     2941 ggagggttat tgaagtgttt ttgttaggag gtttaagtgg atcttactca agtgtctgta
     3001 agggagattc ttcattacaa tcctgtgagt ggtgactttt attggaagcc gagagcaaag
     3061 catttgtttg cggataacag agctgccttg acgtggaaca agaagtatcc aggtaaaaag
     3121 gctggatcac ctgacaacaa gggttatctg agaataaata ttggaggtaa aaaatttaag
     3181 tctcacagac ttgcatggct ttacgtgcat ggctactggc ctgatgtgat tgatcacata
     3241 aacggcgtta aggatgacaa cagaatctcc aatttaagaa gcgtttcttt caaagagaat
     3301 atgaaaaaca tgcctttaaa atcatcttca tcaactggag ttacaggtgt tgaagcaaga
     3361 aaagagcatg ggttttatgt tgcatcgata actgtggatg gaaaacgaaa atacctaggc
     3421 tcattcaaac ttttagatga tgccaaacaa gcaaggaaag aagccaatgc actatatggc
     3481 tttcatgaaa atcatggacg gagccagtaa acgtgtttca agagccattt cgcttgccgg
     3541 aacgcgtcag aaggaagttg aaggaggatc tgtacttctt ccagacgtag cactttacgc
     3601 ggctggtcat cgtaagtgtg ggcaaattac cgctagataa ttattcaggc agcaatcatc
     3661 taatcaggtc gcaatgcggc cttttttatt gccaaaattt aaggaataac aacatgaatt
     3721 cagcagattt atcgaagatt cttgaagagc acaaggtgtg gattacctca atgcgtgaga
     3781 gcggatcgag agccaacctg cgcgatgcca acctgcgcga tgccaacctg cgcggtgcca
     3841 acctgcgcga tgccaacctg cgcggtgccg acctgcgcgg tgccaacctg cgcgatgcca
     3901 acctgcgcga tgccaacctg tgcggtgcca acctgtgcgg tgccaacctg cgcggtgcca
     3961 acctgcgcga tgccgacctg cgcgatgcca acctgcgcga tgccaacctg tgcggtgcca
     4021 acctgtgcgg tgccaacctg cgcggtgcca acctgcgcga tgccgacctg cgcgatgcca
     4081 acctgtgcgg tgccgacctg cgcggtgcca acctgcgcga tgccaacctg cgcggtgccg
     4141 acctgcgcgg tgccaacctg cgcgatgcca acctgcctga tctaactttc gtaatcctgg
     4201 gtgagaaata cttcataagt ataacgaacg gtgaatatgt acgagcagga tgccagaacc
     4261 acacagttga ggaatggaga aaatatagta agcaggaaat tgctgagatg gatggtcgta
     4321 aagctcttaa attttatcca cgtcttctgg acattatcga cttctatatt ggtaaaggtg
     4381 aacgcccgga ttggttaaca agtaaagaat atgcagatga agtaactgag taagcgtatt
     4441 tttggcagcg agacacagag gtgaatatga aaaagtttaa aggtacgcca agtcagttgg
     4501 agcggaaagg atgtacgcat ttgcaggcaa gatagagctg ggttgcagct tggttttatc
     4561 atgacccatg acgaaaatcg cgtagctgaa tgtgaggcca atgcacactt gatagcagca
     4621 gctccggagt tattggaagc gctacaattg cttctcaact cctggtcaaa tggtagttct
     4681 aaagatattt caaacgctga gagaaaagct cgctcagcca tcagcaaggc tcttggggag
     4741 gagtgatgga aataaataaa gagcaagcat cagaaattat caaacttatc gaacaagcat
     4801 tacttgatgg gtttgatgat gaaattttgg tttcgctaca cgaaagtctt accaaatttg
     4861 tcagcgaata agcacctaat gaccatttta atagtggtca ttgt
//
