LOCUS       CP148867                4904 bp    DNA     circular BCT 25-MAR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Infantis strain
            Z1322PSL0028 plasmid pZ1322PSL0028-4, complete sequence.
ACCESSION   CP148867
VERSION     CP148867.1
DBLINK      BioProject: PRJNA1087122
            BioSample: SAMN40424048
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Infantis
  ORGANISM  Salmonella enterica subsp. enterica serovar Infantis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4904)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Salmonella enterica subsp. enterica
            serovar Infantis isolated from humans, companion and industrial
            animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4904)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 145X
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/19/2024 14:41:40
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,985
            CDSs (total)                      :: 4,866
            Genes (coding)                    :: 3,538
            CDSs (with protein)               :: 3,538
            Genes (RNA)                       :: 119
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 1,328
            CDSs (without protein)            :: 1,328
            Pseudo Genes (ambiguous residues) :: 0 of 1,328
            Pseudo Genes (frameshifted)       :: 1,163 of 1,328
            Pseudo Genes (incomplete)         :: 146 of 1,328
            Pseudo Genes (internal stop)      :: 147 of 1,328
            Pseudo Genes (multiple problems)  :: 117 of 1,328
            Pseudo Genes (short protein)      :: 1 of 1,328
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4904
                     /organism="Salmonella enterica subsp. enterica serovar
                     Infantis"
                     /mol_type="genomic DNA"
                     /strain="Z1322PSL0028"
                     /serovar="Infantis"
                     /host="Dog"
                     /sub_species="enterica"
                     /db_xref="taxon:595"
                     /plasmid="pZ1322PSL0028-4"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-02-16"
     gene            complement(35..160)
                     /locus_tag="WI209_24875"
     CDS             complement(35..160)
                     /locus_tag="WI209_24875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000405108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WXT36675.1"
                     /translation="MEINKEQASEIIKLIEQALLDGFDDEILVSLHESLTKFVSE"
                     /name="hypothetical protein"
     gene            complement(160..438)
                     /locus_tag="WI209_24880"
     CDS             complement(160..438)
                     /locus_tag="WI209_24880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001748038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WXT36676.1"
                     /translation="MKKFKGTPVAWSGKDVRICRQDRAGLQLGFIMTHDENRVAECEAN
                     AHLIAAAPELLEALQLLLNSWSNGSSKDISNAERKARSAISKALGEE"
                     /name="hypothetical protein"
     gene            complement(472..1191)
                     /locus_tag="WI209_24885"
     CDS             complement(472..1191)
                     /locus_tag="WI209_24885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016023187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="WXT36677.1"
                     /translation="MNSADLSKILEEHKVWITSMRESGSRANLRDANLRDANLRGANLR
                     DANLRGADLRGANLRDANLRDANLCGANLCGANLRGANLRDADLRDANLRDANLCGANL
                     CGANLRGANLRDADLRDANLCGADLRGANLRDANLRGADLRGANLRDANLPDLTFVILG
                     EKYFISITNGEYVRAGCQNHTVEEWRKYSKQEIAEMDGRKALKFYPRLLDIIDFYIGKG
                     ERPDWLTSKEYADEVTE"
                     /name="pentapeptide repeat-containing protein"
     gene            complement(1265..1393)
                     /locus_tag="WI209_24890"
                     /pseudo=""
     CDS             complement(1265..1393)
                     /locus_tag="WI209_24890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016063037.1"
                     /note="frameshifted; incomplete; partial on complete
                     genome; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="regulator"
                     /name="regulator"
     gene            complement(1395..1928)
                     /locus_tag="WI209_24895"
     CDS             complement(1395..1928)
                     /locus_tag="WI209_24895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001535909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="WXT36678.1"
                     /translation="MDLTQVSVREILHYNPVSGDFYWKPRAKHLFADNRAALTWNKKYP
                     GKKAGSPDNKGYLRINIGGKKFKSHRLAWLYVHGYWPDVIDHINGVKDDNRISNLRSVS
                     FKENMKNMPLKSSSSTGVTGVEARKEHGFYVASITVDGKRKYLGSFKLLDDAKQARKEA
                     NALYGFHENHGRSQ"
                     /name="HNH endonuclease"
     gene            complement(2029..2445)
                     /locus_tag="WI209_24900"
     CDS             complement(2029..2445)
                     /locus_tag="WI209_24900"
                     /inference="COORDINATES: protein motif:HMM:NF024784.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="WXT36679.1"
                     /translation="MLSDCIEHNQKQNYGTTSTRINGKTVAIRLHRKAYCESVGVSIES
                     IKGRVVLHMCDNPRCINPKHLVLGTQLENVRDMEIKGRGNHVSGERNGSAKLTAEDVLE
                     IRSSTLSNRKIAAIYGLSDSYISSIRLRKKWKHI"
                     /name="HNH endonuclease"
     gene            complement(2757..3510)
                     /locus_tag="WI209_24905"
                     /pseudo=""
     CDS             complement(2757..3510)
                     /locus_tag="WI209_24905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015705908.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /name="LexA family transcriptional regulator"
     gene            3551..3784
                     /locus_tag="WI209_24910"
     CDS             3551..3784
                     /locus_tag="WI209_24910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000102594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="WXT36672.1"
                     /translation="MNNELLRWRKDATSAEWVRLAELANTTVGYLDQIAYGYRRASPEK
                     ALAIEVASKVFKKHMPVLKESLVFATTRNSAA"
                     /name="transcriptional regulator"
     gene            3935..4231
                     /locus_tag="WI209_24915"
     CDS             3935..4231
                     /locus_tag="WI209_24915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0003677 - DNA binding [Evidence IEA]; GO_process:
                     GO:0006355 - regulation of DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CII family transcriptional regulator"
                     /protein_id="WXT36673.1"
                     /translation="MTQASYSKPTQREIDCAETDLLINLSTLTQRGLAKMIGCHESKIS
                     RTDWRFIASVLCAFGMASDISPISRAFKYALDEITKKKSPAATEDFKQIDMQF"
                     /name="CII family transcriptional regulator"
     gene            4264..4410
                     /locus_tag="WI209_24920"
     CDS             4264..4410
                     /locus_tag="WI209_24920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2740 family protein"
                     /protein_id="WXT36674.1"
                     /translation="MPKQLSPDQDKLHKNILRDWFLSSFKQPGRFRAELEKVKLILKRK
                     GHE"
                     /name="DUF2740 family protein"
     gene            4403..4903
                     /locus_tag="WI209_24925"
                     /pseudo=""
     CDS             4403..4903
                     /locus_tag="WI209_24925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001531205.1"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /name="replication protein"
ORIGIN
        1 cacaatgacc actattaaaa tggtcattag gtgcttattc gctgacaaat ttggtaagac
       61 tttcgtgtag cgaaaccaaa atttcatcat caaacccatc aagtaatgct tgttcgataa
      121 gtttgataat ttctgatgct tgctctttat ttatttccat cactcctccc caagagcctt
      181 gctgatggct gagcgagctt ttctctcagc gtttgaaata tctttagaac taccatttga
      241 ccaggagttg agaagcaatt gtagcgcttc caataactcc ggagctgctg ctatcaagtg
      301 tgcattggcc tcacattcag ctacgcgatt ttcgtcatgg gtcatgataa aaccaagctg
      361 caacccagct ctatcttgcc tgcaaatgcg tacatccttt ccgctccaag caactggcgt
      421 acctttaaac tttttcatat tcacctctgt gtctcgctgc caaaaatacg cttactcagt
      481 tacttcatct gcatattctt tacttgttaa ccaatccggg cgttcacctt taccaatata
      541 gaagtcgata atgtccagaa gacgtggata aaatttaaga gctttacgac catccatctc
      601 agcaatttcc tgcttactat attttctcca ttcctcaact gtgtggttct ggcatcctgc
      661 tcgtacatat tcaccgttcg ttatacttat gaagtatttc tcacccagga ttacgaaagt
      721 tagatcaggc aggttggcat cgcgcaggtt ggcaccgcgc aggtcggcac cgcgcaggtt
      781 ggcatcgcgc aggttggcac cgcgcaggtc ggcaccgcac aggttggcat cgcgcaggtc
      841 ggcatcgcgc aggttggcac cgcgcaggtt ggcaccgcac aggttggcac cgcacaggtt
      901 ggcatcgcgc aggttggcat cgcgcaggtc ggcatcgcgc aggttggcac cgcgcaggtt
      961 ggcaccgcac aggttggcac cgcacaggtt ggcatcgcgc aggttggcat cgcgcaggtt
     1021 ggcaccgcgc aggtcggcac cgcgcaggtt ggcatcgcgc aggttggcac cgcgcaggtt
     1081 ggcatcgcgc aggttggcat cgcgcaggtt ggctctcgat ccgctctcac gcattgaggt
     1141 aatccacacc ttgtgctctt caagaatctt cgataaatct gctgaattca tgttgttatt
     1201 ccttaaattt tggcaataaa aaaggccgca ttgcgacctg attagatgat tgctgcctga
     1261 ataattatct agcggtaatt tgcccacact tacgatgacc agccgcgtaa agtgctacgt
     1321 ctggaagaag tacagatcct ccttcaactt ccttctgacg cgttccggca agcgaaatgg
     1381 ctcttgaaac acgtttactg gctccgtcca tgattttcat gaaagccata tagtgcattg
     1441 gcttctttcc ttgcttgttt ggcatcatct aaaagtttga atgagcctag gtattttcgt
     1501 tttccatcca cagttatcga tgcaacataa aacccatgct cttttcttgc ttcaacacct
     1561 gtaactccag ttgatgaaga tgattttaaa ggcatgtttt tcatattctc tttgaaagaa
     1621 acgcttctta aattggagat tctgttgtca tccttaacgc cgtttatgtg atcaatcaca
     1681 tcaggccagt agccatgcac gtaaagccat gcaagtctgt gagacttaaa ttttttacct
     1741 ccaatattta ttctcagata acccttgttg tcaggtgatc cagccttttt acctggatac
     1801 ttcttgttcc acgtcaaggc agctctgtta tccgcaaaca aatgctttgc tctcggcttc
     1861 caataaaagt caccactcac aggattgtaa tgaagaatct cccttacaga cacttgagta
     1921 agatccactt aaacctccta acaaaaacac ttcaataacc ctccggttat ggaaatgttc
     1981 ttttgtagtg agcagcattg ccgttcatcc tgaacccgcc taggcgggct atatgtgttt
     2041 ccacttcttg cgaagcctaa ttgaactaat gtacgaatca gacagtccat agatggctgc
     2101 tattttcctg ttactcagcg tggagcttcg tatttcaaga acatcttctg cggtaagttt
     2161 cgcggaaccg tttctctctc cagagacgtg atttcctctc cctttaattt ccatatccct
     2221 tacgttttcc aactgagtac caagcaccaa atgctttggg ttgatgcatc gcgggttatc
     2281 acacatatgc agcactacac gtcctttaat gctctcaata gagacaccga ctgattcgca
     2341 gtaggctttc ctgtgaagcc ttatcgccac tgtcttaccg ttgattcgag ttgaagtggt
     2401 accgtaattt tgtttttggt tatgctctat gcaatcactt aacatgttga tctctctaaa
     2461 aagaaaacat caggttaagc aatcccgcat attggaaccg tccattggct cgccatgggg
     2521 ccgacgcatg gtttactgtc gcgccgttcg actgaccgaa acgatgtgct gtctcgatgg
     2581 gttaaattta gcgtgatgct aaatcattgg caatagcaaa atgctaaatt actggcgcgt
     2641 gaagtttagc tttttgatta ataaaggaat taatttttag cattgaggtg gtgtagaaaa
     2701 cgaaaagcaa aaaaaagccc gctcattggc gggcttaggg ggaatatcgt gagtctttac
     2761 ggcaagttga gaatcttcgc gtctactaca acgccaatga tccggcaatt accatttatt
     2821 tcttgcatgg gatactgcgg gttaagcggt ttaaggaatc ggcggccagc gtctatgaca
     2881 agcttcttga aagtggcctc attgtctccg tcaagcttag cgacaacaag ctttccgttc
     2941 cgtggctcga cttccggatc aacaagaatt gccgcaccct ctggaatact caggccaaca
     3001 ggggatgtca tagagtcccc cttaacatcc agccagaatg aatccttctg agcacaccac
     3061 agtggtgtca taccagcgat ttattgattt gcgatgataa ggttctacag cttccatcca
     3121 ttgccccgcg cttatccaac tgattacagg ataacttcct ttcgtgtcgt tcatccctcg
     3181 aaatgcaacg ttacccgtgt tttctttgga gtgcaaaaca tccagccaac cgaatgacag
     3241 acccaaagca ttttcaattt ttctagccag cttatccccg atgttgcgat tcgggttttc
     3301 tcctagaagc tgactcaggg cggcaggact ggtgtctatg agttcagcga actgtgcctt
     3361 agtcattcca gtcgaacgtt tccgctcttc gtacaaagcc tctaggttgg cttttctgat
     3421 ttctttgttt tccattccct gagtctcgca ttctttagca atgcgataaa tgtgcaaatt
     3481 gctaaatgat gcttgcttag tatttagcat aacgctaaac tccaattgta acgttaaccc
     3541 ggagcaacct atgaacaacg aattactccg ctggcgaaag gatgcgactt ccgctgagtg
     3601 ggtgcggttg gcagaactag ccaacacaac ggttggctat ttagaccaga ttgcttacgg
     3661 ataccgcagg gcttctccag agaaggcact ggcgattgaa gtggcaagca aggttttcaa
     3721 aaagcacatg ccagtactga aagaaagcct ggtctttgcg accacccgta acagcgcagc
     3781 atgaaccctg tcgccttcag gcggcaagta accagtgagc aacttttgat aaccgaacgg
     3841 cccggtatat ggtcgggtgc ccggcgtggt caaggatgac tgtcaatggt gcacgataaa
     3901 aacccaaatt atttacctat ggagatagta agaaatgaca caagcaagtt acagcaagcc
     3961 aacacagcga gaaattgatt gcgctgaaac tgatttactc atcaacctgt caacgcttac
     4021 ccagcgcggt ctggcaaaga tgattggctg tcatgaatct aagataagca gaacggactg
     4081 gagatttatt gcttcggtct tgtgtgcttt cggaatggca tcagacatca gtccgattag
     4141 cagggctttt aagtatgcgc ttgatgaaat cacaaagaaa aaatccccgg ctgccaccga
     4201 ggattttaag caaattgata tgcaattctg agggaattac tggatcaatc cacaggagta
     4261 attatgccaa aacaactcag tcctgaccag gacaaattac acaaaaacat actacgtgat
     4321 tggttcttat ccagcttcaa acagcctggt cgatttcggg ctgagttgga gaaagtgaag
     4381 ctaatactga agaggaaagg tcatgagtaa tcttgcaaca gttacaccga taaaacctca
     4441 tctggaggtt gtggagcatc gcgtggcaga actcgacgat ggctacaccc ggactgcaaa
     4501 tacactgctg gaagctgtca tgctttctgg gcttactcaa catcagctac tgattgttat
     4561 ggctgtgtgg cgcaagacat acggttataa caaaaaaata gattggatcg gaaatgaaca
     4621 gttcgctgaa ctcactggca tggcgccaac caaatgttct accgccaaaa acgagcttat
     4681 cagaatgggg gttctcactc aggtggggcg tcaggttggt atgaataaaa atatttccga
     4741 gtggaagacg aaggttaacg gattcggtaa aacatttacc agatcggtaa aactaacctt
     4801 caccaaatcg gtaaaaacca atttaccgaa tcagtcaaac acaaaagaca atatacaaaa
     4861 gacaataaat acaaataccc ccttaccccc taacggtggc ggca
//
