LOCUS       CP148863                4905 bp    DNA     circular BCT 25-MAR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Infantis strain
            Z1322PSL0030 plasmid pZ1322PSL0030-4, complete sequence.
ACCESSION   CP148863
VERSION     CP148863.1
DBLINK      BioProject: PRJNA1087122
            BioSample: SAMN40424049
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Infantis
  ORGANISM  Salmonella enterica subsp. enterica serovar Infantis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4905)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Salmonella enterica subsp. enterica
            serovar Infantis isolated from humans, companion and industrial
            animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4905)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 144X
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/19/2024 14:47:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,972
            CDSs (total)                      :: 4,853
            Genes (coding)                    :: 3,518
            CDSs (with protein)               :: 3,518
            Genes (RNA)                       :: 119
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 1,335
            CDSs (without protein)            :: 1,335
            Pseudo Genes (ambiguous residues) :: 0 of 1,335
            Pseudo Genes (frameshifted)       :: 1,169 of 1,335
            Pseudo Genes (incomplete)         :: 147 of 1,335
            Pseudo Genes (internal stop)      :: 147 of 1,335
            Pseudo Genes (multiple problems)  :: 116 of 1,335
            Pseudo Genes (short protein)      :: 1 of 1,335
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4905
                     /organism="Salmonella enterica subsp. enterica serovar
                     Infantis"
                     /mol_type="genomic DNA"
                     /strain="Z1322PSL0030"
                     /serovar="Infantis"
                     /host="Dog"
                     /sub_species="enterica"
                     /db_xref="taxon:595"
                     /plasmid="pZ1322PSL0030-4"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-02-16"
     gene            complement(6..503)
                     /locus_tag="WI213_24825"
                     /pseudo=""
     CDS             complement(6..503)
                     /locus_tag="WI213_24825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067073.1"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /name="replication protein"
     gene            complement(496..642)
                     /locus_tag="WI213_24830"
     CDS             complement(496..642)
                     /locus_tag="WI213_24830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2740 family protein"
                     /protein_id="WXT33138.1"
                     /translation="MPKQLSPDQDKLHKNILRDWFLSSFKQPGRFRAELEKVKLILKRK
                     GHE"
                     /name="DUF2740 family protein"
     gene            complement(675..971)
                     /locus_tag="WI213_24835"
     CDS             complement(675..971)
                     /locus_tag="WI213_24835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0003677 - DNA binding [Evidence IEA]; GO_process:
                     GO:0006355 - regulation of DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CII family transcriptional regulator"
                     /protein_id="WXT33139.1"
                     /translation="MTQASYSKPTQREIDCAETDLLINLSTLTQRGLAKMIGCHESKIS
                     RTDWRFIASVLCAFGMASDISPISRAFKYALDEITKKKSPAATEDFKQIDMQF"
                     /name="CII family transcriptional regulator"
     gene            complement(1122..1355)
                     /locus_tag="WI213_24840"
     CDS             complement(1122..1355)
                     /locus_tag="WI213_24840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000102594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="WXT33140.1"
                     /translation="MNNELLRWRKDATSAEWVRLAELANTTVGYLDQIAYGYRRASPEK
                     ALAIEVASKVFKKHMPVLKESLVFATTRNSAA"
                     /name="transcriptional regulator"
     gene            1396..2148
                     /locus_tag="WI213_24845"
     CDS             1396..2148
                     /locus_tag="WI213_24845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015705908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="WXT33141.1"
                     /translation="MLNTKQASFSNLHIYRIAKECETQGMENKEIRKANLEALYEERKR
                     STGMTKAQFAELIDTSPAALSQLLGENPNRNIGDKLARKIENALGLSFGWLDVLHSKEN
                     TGNVAFRGMNDTKGSYPVISWISAGQWMEAVEPYHRKSIDRWYDTTVVCSEDSFWLDVK
                     GDSMTSPVGLSIPEGAAILVDPEVEPRNGKLVVAKLDGDNEATFKKLVIDAGRRFLKPL
                     NPQYPMQEINGNCRIIGVVVDAKILNLP"
                     /name="LexA family transcriptional regulator"
     gene            2977..3510
                     /locus_tag="WI213_24850"
     CDS             2977..3510
                     /locus_tag="WI213_24850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001535909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="WXT33135.1"
                     /translation="MDLTQVSVREILHYNPVSGDFYWKPRAKHLFADNRAALTWNKKYP
                     GKKAGSPDNKGYLRINIGGKKFKSHRLAWLYVHGYWPDVIDHINGVKDDNRISNLRSVS
                     FKENMKNMPLKSSSSTGVTGVEARKEHGFYVASITVDGKRKYLGSFKLLDDAKQARKEA
                     NALYGFHENHGRSQ"
                     /name="HNH endonuclease"
     gene            3715..4434
                     /locus_tag="WI213_24855"
     CDS             3715..4434
                     /locus_tag="WI213_24855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016023187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="WXT33136.1"
                     /translation="MNSADLSKILEEHKVWITSMRESGSRANLRDANLRDANLRGANLR
                     DANLRGADLRGANLRDANLRDANLCGANLCGANLRGANLRDADLRDANLRDANLCGANL
                     CGANLRGANLRDADLRDANLCGADLRGANLRDANLRGADLRGANLRDANLPDLTFVILG
                     EKYFISITNGEYVRAGCQNHTVEEWRKYSKQEIAEMDGRKALKFYPRLLDIIDFYIGKG
                     ERPDWLTSKEYADEVTE"
                     /name="pentapeptide repeat-containing protein"
     gene            4747..4872
                     /locus_tag="WI213_24860"
     CDS             4747..4872
                     /locus_tag="WI213_24860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000405108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WXT33137.1"
                     /translation="MEINKEQASEIIKLIEQALLDGFDDEILVSLHESLTKFVSE"
                     /name="hypothetical protein"
ORIGIN
        1 ttgccgccac cgttaggggg taagggggta tttgtattta ttgtcttttg tatattgtct
       61 tttgtgtttg actgattcgg taaattggtt tttaccgatt tggtgaaggt tagttttacc
      121 gatctggtaa atgttttacc gaatccgtta accttcgtct tccactcgga aatattttta
      181 ttcataccaa cctgacgccc cacctgagtg agaaccccca ttctgataag ctcgtttttg
      241 gcggtagaac atttggttgg cgccatgcca gtgagttcag cgaactgttc atttccgatc
      301 caatctattt ttttgttata accgtatgtc ttgcgccaca cagccataac aatcagtagc
      361 tgatgttgag taagcccaga aagcatgaca gcttccagca gtgtatttgc agtccgggtg
      421 tagccatcgt cgagttctgc cacgcgatgc tccacaacct ccagatgagg ttttatcggt
      481 gtaactgttg caagattact catgaccttt cctcttcagt attagcttca ctttctccaa
      541 ctcagcccga aatcgaccag gctgtttgaa gctggataag aaccaatcac gtagtatgtt
      601 tttgtgtaat ttgtcctggt caggactgag ttgttttggc ataattactc ctgtggattg
      661 atccagtaat tccctcagaa ttgcatatca atttgcttaa aatcctcggt ggcagccggg
      721 gattttttct ttgtgatttc atcaagcgca tacttaaaag ccctgctaat cggactgatg
      781 tctgatgcca ttccgaaagc acacaagacc gaagcaataa atctccagtc cgttctgctt
      841 atcttagatt catgacagcc aatcatcttt gccagaccgc gctgggtaag cgttgacagg
      901 ttgatgagta aatcagtttc agcgcaatca atttctcgct gtgttggctt gctgtaactt
      961 gcttgtgtca tttcttacta tctccatagg taaataattt gggtttttat cgtgcaccat
     1021 tgacagtcat ccttgaccac gccgggcacc cgaccatata ccgggccgtt cggttatcaa
     1081 aagttgctca ctggttactt gccgcctgaa ggcgacaggg ttcatgctgc gctgttacgg
     1141 gtggtcgcaa agaccaggct ttctttcagt actggcatgt gctttttgaa aaccttgctt
     1201 gccacttcga tcgccagtgc cttctctgga gaagccctgc ggtatccgta agcaatctgg
     1261 tctaaatagc caaccgttgt gttggctagt tctgccaacc gcacccactc agcggaagtc
     1321 gcatcctttc gccagcggag taattcgttg ttcataggtt gctccgggtt aacgttacaa
     1381 ttggagttta gcgttatgct aaatactaag caagcatcat ttagcaattt gcacatttat
     1441 cgcattgcta aagaatgcga gactcaggga atggaaaaca aagaaatcag aaaagccaac
     1501 ctagaggctt tgtacgaaga gcggaaacgt tcgactggaa tgactaaggc acagttcgct
     1561 gaactcatag acaccagtcc tgccgccctg agtcagcttc taggagaaaa cccgaatcgc
     1621 aacatcgggg ataagctggc tagaaaaatt gaaaatgctt tgggtctgtc attcggttgg
     1681 ctggatgttt tgcactccaa agaaaacacg ggtaacgttg catttcgagg gatgaacgac
     1741 acgaaaggaa gttatcctgt aatcagttgg ataagcgcgg ggcaatggat ggaagctgta
     1801 gaaccttatc atcgcaaatc aatagatcgc tggtatgaca ccactgtggt gtgctcagag
     1861 gattcattct ggctggatgt taagggggac tctatgacat cccctgttgg cctgagtatt
     1921 ccagagggtg cggcaattct tgttgatccg gaagtcgagc cacggaacgg aaagcttgtt
     1981 gtcgctaagc ttgacggaga caatgaggcc actttcaaga agcttgtcat agacgctggc
     2041 cgccgattcc ttaaaccgct taacccgcag tatcccatgc aagaaataaa tggtaattgc
     2101 cggatcattg gcgttgtagt agacgcgaag attctcaact tgccgtaaag actcacgata
     2161 ttccccctaa gcccgccaat gagcgggctt ttttttgctt ttcgttttct acaccacctc
     2221 aatgctaaaa attaattcct ttattaatca aaaagctaaa cttcacgcgc cagtaattta
     2281 gcattttgct attgccaatg atttagcatc acgctaaatt taacccatcg agacagcaca
     2341 tcgtttcggt cagtcgaacg gcgcgacagt aaaccatgcg tcggccccat ggcgagccaa
     2401 tggacggttc caatatgcgg gattgcttaa cctgatgttt tctttttaga gagatcaaca
     2461 tgttaagtga ttgcatagag cataaccaaa aacaaaatta cggtaccact tcaactcgaa
     2521 tcaacggtaa gacagtggcg ataaggcttc acaggaaagc ctactgcgaa tcagtcggtg
     2581 tctctattga gagcattaaa ggacgtgtag tgctgcatat gtgtgataac ccgcgatgca
     2641 tcaacccaga gcatttggtg cttggtactc agttggaaaa cgtaagggat atggaaatta
     2701 aagggagagg aaatcacgtc tctggagaga gaaacggttc cgcgaaactt accgcagaag
     2761 atgttcttga aatacgaagc tccacgctga gtaacaggaa aatagcagcc atctatggac
     2821 tgtctgattc gtacattagt tcaattaggc ttcgcaagaa gtggaaacac atatagcccg
     2881 cctaggcggg ttcaggatga acggcaatgc tgctcactac aaaagaacat ttccataacc
     2941 ggagggttat tgaagtgttt ttgttaggag gtttaagtgg atcttactca agtgtctgta
     3001 agggagattc ttcattacaa tcctgtgagt ggtgactttt attggaagcc gagagcaaag
     3061 catttgtttg cggataacag agctgccttg acgtggaaca agaagtatcc aggtaaaaag
     3121 gctggatcac ctgacaacaa gggttatctg agaataaata ttggaggtaa aaaatttaag
     3181 tctcacagac ttgcatggct ttacgtgcat ggctactggc ctgatgtgat tgatcacata
     3241 aacggcgtta aggatgacaa cagaatctcc aatttaagaa gcgtttcttt caaagagaat
     3301 atgaaaaaca tgcctttaaa atcatcttca tcaactggag ttacaggtgt tgaagcaaga
     3361 aaagagcatg ggttttatgt tgcatcgata actgtggatg gaaaacgaaa atacctaggc
     3421 tcattcaaac ttttagatga tgccaaacaa gcaaggaaag aagccaatgc actatatggc
     3481 tttcatgaaa atcatggacg gagccagtaa acgtgtttca agagccattt cgcttgccgg
     3541 aacgcgtcag aaggaagttg aaggaggatt ctgtacttct tccagacgta gcactttacg
     3601 cggctggtca tcgtaagtgt gggcaaatta ccgctagata attattcagg cagcaatcat
     3661 ctaatcaggt cgcaatgcgg ccttttttat tgccaaaatt taaggaataa caacatgaat
     3721 tcagcagatt tatcgaagat tcttgaagag cacaaggtgt ggattacctc aatgcgtgag
     3781 agcggatcga gagccaacct gcgcgatgcc aacctgcgcg atgccaacct gcgcggtgcc
     3841 aacctgcgcg atgccaacct gcgcggtgcc gacctgcgcg gtgccaacct gcgcgatgcc
     3901 aacctgcgcg atgccaacct gtgcggtgcc aacctgtgcg gtgccaacct gcgcggtgcc
     3961 aacctgcgcg atgccgacct gcgcgatgcc aacctgcgcg atgccaacct gtgcggtgcc
     4021 aacctgtgcg gtgccaacct gcgcggtgcc aacctgcgcg atgccgacct gcgcgatgcc
     4081 aacctgtgcg gtgccgacct gcgcggtgcc aacctgcgcg atgccaacct gcgcggtgcc
     4141 gacctgcgcg gtgccaacct gcgcgatgcc aacctgcctg atctaacttt cgtaatcctg
     4201 ggtgagaaat acttcataag tataacgaac ggtgaatatg tacgagcagg atgccagaac
     4261 cacacagttg aggaatggag aaaatatagt aagcaggaaa ttgctgagat ggatggtcgt
     4321 aaagctctta aattttatcc acgtcttctg gacattatcg acttctatat tggtaaaggt
     4381 gaacgcccgg attggttaac aagtaaagaa tatgcagatg aagtaactga gtaagcgtat
     4441 ttttggcagc gagacacaga ggtgaatatg aaaaagttta aaggtacgcc aagtcacttg
     4501 gagcggaaag gatgtacgca tttgcaggca agatagagct gggttgcagc ttggttttat
     4561 catgacccat gacgaaaatc gcgtagctga atgtgaggcc aatgcacact tgatagcagc
     4621 agctccggag ttattggaag cgctacaatt gcttctcaac tcctggtcaa atggtagttc
     4681 taaagatatt tcaaacgctg agagaaaagc tcgctcagcc atcagcaagg ctcttgggga
     4741 ggagtgatgg aaataaataa agagcaagca tcagaaatta tcaaacttat cgaacaagca
     4801 ttacttgatg ggtttgatga tgaaattttg gtttcgctac acgaaagtct taccaaattt
     4861 gtcagcgaat aagcacctaa tgaccatttt aatagtggtc attgt
//
