LOCUS       CP148862                5872 bp    DNA     circular BCT 25-MAR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Infantis strain
            Z1322PSL0030 plasmid pZ1322PSL0030-3, complete sequence.
ACCESSION   CP148862
VERSION     CP148862.1
DBLINK      BioProject: PRJNA1087122
            BioSample: SAMN40424049
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Infantis
  ORGANISM  Salmonella enterica subsp. enterica serovar Infantis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5872)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Salmonella enterica subsp. enterica
            serovar Infantis isolated from humans, companion and industrial
            animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5872)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 144X
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/19/2024 14:47:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,972
            CDSs (total)                      :: 4,853
            Genes (coding)                    :: 3,518
            CDSs (with protein)               :: 3,518
            Genes (RNA)                       :: 119
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 1,335
            CDSs (without protein)            :: 1,335
            Pseudo Genes (ambiguous residues) :: 0 of 1,335
            Pseudo Genes (frameshifted)       :: 1,169 of 1,335
            Pseudo Genes (incomplete)         :: 147 of 1,335
            Pseudo Genes (internal stop)      :: 147 of 1,335
            Pseudo Genes (multiple problems)  :: 116 of 1,335
            Pseudo Genes (short protein)      :: 1 of 1,335
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..5872
                     /organism="Salmonella enterica subsp. enterica serovar
                     Infantis"
                     /mol_type="genomic DNA"
                     /strain="Z1322PSL0030"
                     /serovar="Infantis"
                     /host="Dog"
                     /sub_species="enterica"
                     /db_xref="taxon:595"
                     /plasmid="pZ1322PSL0030-3"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-02-16"
     gene            complement(join(5844..5872,1..529))
                     /locus_tag="WI213_24775"
     CDS             complement(join(5844..5872,1..529))
                     /locus_tag="WI213_24775"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WXT33129.1"
                     /translation="MENQKQGHFSLFRSLLSKEWAKDTAKLAMWIRLIGEASYKHRTVE
                     FSGREWDLMLGELVTTAAIMGRKLRDQDGHEKSPQAVTRMINFFVKEGMITTKGTRFGT
                     VISITNYGQYQEISPDEPCDKPSDNNKPSNGAALKHSPDEPCDKPSDEQNKKVVNKKVV
                     NNNKTPLPPMGVVSNAESQNPH"
                     /name="hypothetical protein"
     gene            complement(592..852)
                     /locus_tag="WI213_24780"
     CDS             complement(592..852)
                     /locus_tag="WI213_24780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001226911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WXT33130.1"
                     /translation="MRKNTEMHKEVKRNRFLQSIDSKTAMTFSSVAKFELMKSEAKALL
                     KDLPVENGYTFIPNSFLERLLKQEFSVDQFSEILKVFREGR"
                     /name="hypothetical protein"
     gene            complement(874..1164)
                     /locus_tag="WI213_24785"
     CDS             complement(874..1164)
                     /locus_tag="WI213_24785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000424138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0003677 - DNA binding [Evidence IEA]; GO_process:
                     GO:0006355 - regulation of DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CII family transcriptional regulator"
                     /protein_id="WXT33131.1"
                     /translation="MELTNHSKKIREVETELRARLVSMGQTNFAKMAGWSDSKVSRLNI
                     QDMAVTFVLLEKVWETSLIREVARQAVEAVMPRNKKRPAATERSEQIQMDF"
                     /name="CII family transcriptional regulator"
     gene            complement(1301..1528)
                     /locus_tag="WI213_24790"
     CDS             complement(1301..1528)
                     /locus_tag="WI213_24790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001180318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WXT33132.1"
                     /translation="MQNLDEPIKGIGIPEVARACGVSERAVYKWLKNGFLPKTEFFGKT
                     RYASKIEEISGGKFQAVDLLEISKKNLLSA"
                     /name="helix-turn-helix domain-containing protein"
     gene            1606..2316
                     /locus_tag="WI213_24795"
     CDS             1606..2316
                     /locus_tag="WI213_24795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000250468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="WXT33133.1"
                     /translation="MVQNEKVRQEFAQRLAQACKEAGLDEHGRGIAIARALDVSSKGVS
                     KWFNAESLPRQEKMNALANFLKVDVVWLQHGSVRQSTTTNPQSLTFVGQLRKGLVRVVG
                     EAILGVDGAIEMTEERDGWLKIYSDDPEAFGLRVKGDSMWPRIKSGEYVLIEPNTKVCP
                     GDEVFVRTIEGHNMIKVLGYDRDGEYQFTSINQNHRPITLPYYEVSKVEYVAGILKQSR
                     HLDDIEAREWLRNN"
                     /name="helix-turn-helix transcriptional regulator"
     gene            2552..3571
                     /locus_tag="WI213_24800"
     CDS             2552..3571
                     /locus_tag="WI213_24800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001767473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="WXT33134.1"
                     /translation="MKKYAIWNNKGGTGKTSLSFQAICRYAEIHPLERVLVIDVCPQAN
                     LSELFLGGLIGNGSINLLTRHDINNRCTLGGYFQMRLPTPYQKPIFDAHDYLTHPKKFN
                     EHIPANISLICGDPLLELQANAINTLANQQIPGTNAWVSIIDWINDLIKDLNDEYDVLF
                     IDCNPSFSIYTQIALAAVEKLILPVMADDSSRRAIQNAFSLIYGLKLPSDIYASYAFAN
                     KLTMVSRPLPKVHMIAKNRLTQYMGPASAYAAVLKSIDNDIQQLLLSNPEIFDFENVEE
                     GVVNIKDFQTTGVVAFAKGCPFSILPTGSVRVMNRRVKVNAPYKQSCLEAIDKMVVKL"
                     /name="ParA family protein"
     gene            complement(3718..3927)
                     /gene="fumD"
                     /locus_tag="WI213_24805"
     CDS             complement(3718..3927)
                     /gene="fumD"
                     /locus_tag="WI213_24805"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000786965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate hydratase FumD"
                     /protein_id="WXT33125.1"
                     /translation="MKSEELAQLRYQEMCRIVGDVVFAMVAEGHETKRVAIADVIRTEI
                     AKGLDKWDDDQLQCMKLAVKLLEE"
                     /name="fumD"
     gene            4295..4657
                     /locus_tag="WI213_24810"
     CDS             4295..4657
                     /locus_tag="WI213_24810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001479835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitermination protein"
                     /protein_id="WXT33126.1"
                     /translation="MTRRTAFNGSAAGRRRERRAALQNETTASSEVLHRPTLSRVQIQA
                     KGKHETPKRIEDAKSLQFMAKDAFWQLEEYRRHLERAAIVYANEFGHKPAETGVCLPDV
                     AIYNAGYRGAKYVTAR"
                     /name="antitermination protein"
     gene            4674..5117
                     /locus_tag="WI213_24815"
     CDS             4674..5117
                     /locus_tag="WI213_24815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001700901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WXT33127.1"
                     /translation="MKSTVSYTAMRVKQYGGVPSVEVQCIDSRTKIKSDCLILFKTLDE
                     VIFLGAENLHPLIKAEMRQCALNALQEGKGKLQIEAKQTLTELESSRKRQANRARQFHD
                     AIAGWSRELLSLNVDIQRGLDTPTIRSRIGTLAESMEKLKPKK"
                     /name="hypothetical protein"
     gene            5206..5838
                     /locus_tag="WI213_24820"
     CDS             5206..5838
                     /locus_tag="WI213_24820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000159514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WXT33128.1"
                     /translation="MTKEIVTFKGFNKDLKCRGFQFAIGETFHHDGKVEACGSGFHACE
                     CPFDVFSYYPPAESRYAETISFGITDSEEGGDTKIASSSITIKDELTLPQFIQRGIEWI
                     WSKIDKSLEQQIISGNWSAATNTGKRSAATNTGNRSAAEVSGSQSVAASLGIEGKARAS
                     EGGAIVLCYRDEDGELIHIRASKVGENGIMPDTWYQLDEDGEFVECE"
                     /name="hypothetical protein"
ORIGIN
        1 tcaccacccc cattgggggt aggggggttt tattattgtt aactaccttc ttgttaacta
       61 ccttcttgtt ctgttcatcg gatggtttat cgcatggttc atcgggtgaa tgcttcaaag
      121 ccgcgccatt gctgggtttg ttgttatcgg atggtttatc gcatggttca tcgggtgaaa
      181 tttcctgata ttgaccataa tttgtgattg atatcacagt tccaaagcga gttcccttag
      241 tggtgatcat cccttctttg acaaagaaat taatcatcct ggtcactgcc tgagggcttt
      301 tttcatgacc atcctgatcg cgtaatttcc ttcccataat cgccgctgtc gtcaccagtt
      361 ctccaagcat aagatcccat tctcttcctg aaaactctac tgtgcgatgt ttgtaggaag
      421 cctctccaat gagacgaatc cacatcgcaa gttttgctgt atcctttgcc cactccttag
      481 acagaagact cctgaacaag gaaaaatgcc cctgcttttg gttttccatc cgtgaactcc
      541 tgcgcccgtg tgcagcgctg aaatcgtaga cttgtgctgt gttttccatt gctatcgacc
      601 ctcacggaat actttcagga tttcgctgaa ttgatccacc gagaattctt gcttgaggag
      661 tctttcgagg aaagaatttg ggatgaacgt atacccgttt tctacaggca aatccttcag
      721 gagcgccttt gcctcagact tcataagttc aaacttagcc acgctggaaa acgtcattgc
      781 ggttttagaa tcaatggact gaaggaagcg atttcgctta acttctttgt gcatttcggt
      841 attttttcgc atataattac ctctcctgat gccttagaaa tccatctgta tttgctcaga
      901 acgctcggtt gccgccgggc gttttttatt tctcggcatc acagcttcca ccgcttgcct
      961 tgctacttcc ctgattaagc tcgtctccca taccttctcc agaagaacga acgtcaccgc
     1021 catatcctga atgttcaggc ggcttacttt tgaatcagac catcccgcca tctttgcgaa
     1081 atttgtctga cccattgata cgagtcgggc gcgaagctct gtttccactt cgcgtatctt
     1141 tttgctgtga tttgtgagtt ccattactta gtatttcctg tagttaatag ttagttgtgg
     1201 ctatgcgcat gaacgcataa acctgtggtt gatttgttat ctggagttcg cttttcagcg
     1261 acgtaggacg agtgtccgtt gtgaaaagag gtattaaagc ttatgctgat aaaagatttt
     1321 ttttacttat ttcaagtaaa tcaactgctt gaaacttccc cccagaaatt tcttcaattt
     1381 ttgaggcgta tcttgttttc ccaaaaaatt cagtcttagg gagaaagcca tttttgagcc
     1441 atttataaac tgctctctcg ctaactccgc aagccctagc aacttctggg atgccgatac
     1501 ctttaatcgg ctcatcaaga ttttgcattg gctactcctt tttgtacttt cagtacacat
     1561 tatgattgaa ctgaaagttt ttgcaactac tttactatcg aactcatggt tcagaatgaa
     1621 aaagtgcgtc aggaatttgc tcagcggcta gcgcaggcct gtaaagaagc tgggttagac
     1681 gaacatggta ggggaatagc aattgctaga gcccttgatg tatcgtcaaa aggtgtcagc
     1741 aaatggttta atgctgagtc tttgccgcgt caggaaaaaa tgaacgctct ggcgaatttt
     1801 ttaaaagttg atgttgtttg gcttcagcat ggttctgtaa ggcaaagtac aactacaaat
     1861 ccacaatctt taacttttgt tggtcagttg agaaagggac ttgttcgagt ggttggagaa
     1921 gctattcttg gcgttgatgg cgctatagaa atgactgaag aacgtgatgg atggttaaaa
     1981 atatatagtg atgacccaga agcctttggt ttgcgtgtaa aaggcgatag catgtggcca
     2041 cgcatcaaat ctggtgaata cgttcttata gagccaaaca cgaaagtatg tcctggggat
     2101 gaggttttcg taagaactat cgaaggtcat aacatgatta aggtgcttgg ttacgaccga
     2161 gacggagagt atcagtttac aagcatcaat cagaatcacc gtccaattac attgccatat
     2221 tatgaagtat ccaaggtgga atatgtggct ggaattttaa agcaatcacg acaccttgat
     2281 gacatagaag caagggaatg gttgcgtaat aattaagcca atggcctgat gagatattcg
     2341 ggtgatgatg gactgaaggg atgtttgggt aacagtgatt gtgtgaaata ggtcgcagaa
     2401 atgcggcctt tttttcggtt atcgatgtca ccaatggtaa acagtttacc aaaagacttg
     2461 atctatttgg tttaccatgt cactcttggt taactaactt accaacggta aagcattaac
     2521 cattggtgac atcgataacc aggagtttat gatgaagaaa tatgctatat ggaacaacaa
     2581 gggaggaaca gggaaaacaa gcctgtcatt tcaagccatt tgcagatatg cagaaattca
     2641 cccgcttgag cgcgtgttgg ttattgatgt gtgcccacag gcaaacttgt cagagctttt
     2701 ccttggggga ttaatcggta atggaagcat aaacttattg accaggcatg atataaataa
     2761 tagatgtact ttgggtggtt acttccaaat gcgcctaccg acgccttatc aaaaacctat
     2821 ttttgatgcc cacgattatt tgacgcaccc aaaaaaattc aacgaacata ttccagccaa
     2881 tatatcactg atatgcggag acccgcttct tgagcttcaa gcaaacgcta tcaacactct
     2941 tgctaatcag cagattcctg gaacaaatgc atgggtaagc atcattgatt ggattaatga
     3001 tctgattaaa gatttaaatg atgagtacga tgttttgttt attgactgta atcctagttt
     3061 ttcaatttat actcaaatag cattagctgc tgtagaaaag ctcatcttgc cagttatggc
     3121 tgatgattcc tctcgtcgtg ccattcaaaa cgctttctct ttgatttatg ggttaaaatt
     3181 gccatctgac atctatgcct cctacgcatt tgcaaacaaa cttaccatgg taagtagacc
     3241 actaccaaaa gtgcatatga tcgcaaaaaa ccgtcttaca cagtatatgg ggcctgcatc
     3301 agcctatgcc gcagttctga aatcaatcga taatgatatt cagcaactat tactgagcaa
     3361 cccagaaatt ttcgacttcg aaaatgttga agagggagtg gtaaatatta aagattttca
     3421 gacaactggt gttgttgcct ttgctaaagg gtgtccattt tcgatcctcc caacaggcag
     3481 tgtacgagtt atgaacagga gggtaaaagt taatgcccca tataaacaat cttgcctaga
     3541 ggccattgat aaaatggtgg ttaaactata aatcaaccaa cccggccacc gcgccgggtt
     3601 tccttttcct gccgatccct acatcaacca ttcgcccacc aacgtaactc attgataatt
     3661 atgccaacgc atcgctattt catccatttg cccgccactt tgtcaccacc cagataccta
     3721 ctcttccagt agcttcacag caagtttcat gcactgcaac tggtcgtcat cccacttatc
     3781 cagacctttc gctatctccg tacgaataac gtcagctata gctactcttt tggtctcatg
     3841 cccctccgca accatagcaa acacgacatc accgacaatc ctgcacattt cctgatagcg
     3901 caactgcgcc agctcttcgc ttttcatact gatacctagc tcgttttttg ttcagaatag
     3961 tatgacatag aggatttata aaaataaatt catttatatt tcaaaaacgt actaaaagaa
     4021 cagagcattt acgataataa tgtaccaata gttcttgcat attacgtact attggttcaa
     4081 tataaacaca tcaacaggac gcactactca ccaggacggt gaaaatacaa cgattcagtg
     4141 atgaatctac gcggctgaaa agccggaacg accaaagtga gctttggggt gaatgcagaa
     4201 gctaaccttc tcggcggagg cgcttggcaa tgagtacgcg accggagtta gtcgcccggc
     4261 tgtattcacc accaaagttc atcaggaggt cactatgaca cgcagaacag ctttcaatgg
     4321 ttcagcagca ggtcgtcgcc gagaacgtcg cgctgcgctt cagaatgaga ctacagccag
     4381 ttcagaagta ttgcaccgcc ccacccttag ccgtgtacag attcaggcca aaggaaaaca
     4441 tgaaacgcca aaacgtattg aagacgcaaa atcacttcag ttcatggcga aagatgcatt
     4501 ctggcaactg gaagaatata gacgccatct ggagcgggca gccattgtgt acgcaaatga
     4561 gtttggtcac aaacctgctg aaactggcgt gtgtttacca gatgttgcga tctacaatgc
     4621 tggttacaga ggagcaaagt atgtaactgc gagataatta caggagtatt aacttgaaga
     4681 gcacagtcag ctacacagcc atgcgagtaa aacaatatgg tggcgtccct tcagtagaag
     4741 ttcagtgtat agattcacgc accaaaataa aatctgattg tttaattctg ttcaaaacac
     4801 ttgatgaagt aatcttcctg ggagcagaaa acctacaccc tcttataaaa gcagaaatga
     4861 gacagtgcgc actaaatgca ctacaggaag gaaaagggaa attacaaata gaagcaaaac
     4921 aaactttaac agaacttgaa agcagcagaa aaagacaagc caatagagca agacagttcc
     4981 atgatgctat agccggatgg agtagagaat tactttcatt aaacgttgat attcaaagag
     5041 gactggatac tccaacaata aggtcgagaa taggaacttt agcagaaagc atggaaaaac
     5101 ttaaacctaa aaaatagtct gcaaatactt ttttagtata aaacatttca tctaatcagg
     5161 tcgcaatgcg gcctttttta ttgccaaaat ttaaggaata acaacatgac caaagaaatt
     5221 gtgacattca agggatttaa caaagaccta aagtgccgtg gctttcagtt tgcaatcggt
     5281 gaaaccttcc atcacgatgg aaaagtagag gcttgcggtt ctggatttca cgcctgtgaa
     5341 tgtcctttcg atgttttcag ttattatccg ccggcagaaa gccgctatgc ggaaacaata
     5401 tcttttggta ttacagacag tgaagaagga ggtgacacta aaatagccag ttccagtatc
     5461 acaattaagg atgagttaac gcttccacag ttcattcagc gtggtattga atggatttgg
     5521 agcaagatag ataagtcgct tgagcaacag atcatatctg gcaactggtc agcagcaacc
     5581 aacactggca aacggtcagc agcaaccaac actggcaacc ggtcagcagc agaagtgtct
     5641 ggatcgcaat ccgtagcggc atcactcgga atagaaggaa aagccagggc atctgaaggc
     5701 ggagcaattg tactttgcta tcgcgatgaa gatggcgagt taattcatat ccgcgccagc
     5761 aaggttggcg agaacggtat tatgccggat acctggtatc aactggatga agatggtgag
     5821 tttgtagagt gtgagtgatg cacttaatgc ggattctgtg attccgcatt gc
//
