LOCUS       CP148786                4904 bp    DNA     circular BCT 25-MAR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Infantis strain
            Z1323HSL0059 plasmid pZ1323HSL0059-2, complete sequence.
ACCESSION   CP148786
VERSION     CP148786.1
DBLINK      BioProject: PRJNA1087122
            BioSample: SAMN40424076
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Infantis
  ORGANISM  Salmonella enterica subsp. enterica serovar Infantis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4904)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Salmonella enterica subsp. enterica
            serovar Infantis isolated from humans, companion and industrial
            animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4904)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 146X
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/19/2024 14:11:53
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,636
            CDSs (total)                      :: 4,517
            Genes (coding)                    :: 3,351
            CDSs (with protein)               :: 3,351
            Genes (RNA)                       :: 119
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 1,166
            CDSs (without protein)            :: 1,166
            Pseudo Genes (ambiguous residues) :: 0 of 1,166
            Pseudo Genes (frameshifted)       :: 1,061 of 1,166
            Pseudo Genes (incomplete)         :: 86 of 1,166
            Pseudo Genes (internal stop)      :: 91 of 1,166
            Pseudo Genes (multiple problems)  :: 66 of 1,166
            Pseudo Genes (short protein)      :: 1 of 1,166
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4904
                     /organism="Salmonella enterica subsp. enterica serovar
                     Infantis"
                     /mol_type="genomic DNA"
                     /strain="Z1323HSL0059"
                     /serovar="Infantis"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:595"
                     /plasmid="pZ1323HSL0059-2"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-05-23"
     gene            complement(6..503)
                     /locus_tag="WI249_23135"
                     /pseudo=""
     CDS             complement(6..503)
                     /locus_tag="WI249_23135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067073.1"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /name="replication protein"
     gene            complement(496..642)
                     /locus_tag="WI249_23140"
     CDS             complement(496..642)
                     /locus_tag="WI249_23140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2740 family protein"
                     /protein_id="WXS26438.1"
                     /translation="MPKQLSPDQDKLHKNILRDRFLSSFKQPGRFRAELEKVKLILKRK
                     GHE"
                     /name="DUF2740 family protein"
     gene            complement(675..971)
                     /locus_tag="WI249_23145"
     CDS             complement(675..971)
                     /locus_tag="WI249_23145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0003677 - DNA binding [Evidence IEA]; GO_process:
                     GO:0006355 - regulation of DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CII family transcriptional regulator"
                     /protein_id="WXS26439.1"
                     /translation="MTQASYSKPTQREIDRAETDLLINLSTLTQRGLAKMIGCHESKIS
                     RTDWRFIASVLCAFGMASDISPISRAFKYALDEITKKKSPAATEDFKQIDMQF"
                     /name="CII family transcriptional regulator"
     gene            complement(1122..1356)
                     /locus_tag="WI249_23150"
                     /pseudo=""
     CDS             complement(1122..1356)
                     /locus_tag="WI249_23150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000102594.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /name="transcriptional regulator"
     gene            1397..2150
                     /locus_tag="WI249_23155"
                     /pseudo=""
     CDS             1397..2150
                     /locus_tag="WI249_23155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015705908.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /name="LexA family transcriptional regulator"
     gene            2978..3511
                     /locus_tag="WI249_23160"
     CDS             2978..3511
                     /locus_tag="WI249_23160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001535909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="WXS26434.1"
                     /translation="MDLTQVSVREILHYNPVSGDFYWKPRAKHLFADNRAALTWNKKYP
                     GKKAGSPDNKGYLRINIGGKKFKSHRLAWLYVHGYWPDVIDHINGVKDDNRISNLRSVS
                     FKENMKNMPLKSSSSTGVTGVEARKEHGFYVASITVDGKRKYLGSFKLLDDAKQARKEA
                     NALYGFHENHGRSQ"
                     /name="HNH endonuclease"
     gene            3513..3641
                     /locus_tag="WI249_23165"
                     /pseudo=""
     CDS             3513..3641
                     /locus_tag="WI249_23165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016063037.1"
                     /note="frameshifted; incomplete; partial on complete
                     genome; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="regulator"
                     /name="regulator"
     gene            3715..4434
                     /locus_tag="WI249_23170"
     CDS             3715..4434
                     /locus_tag="WI249_23170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016023187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="WXS26435.1"
                     /translation="MNSADLSKILEEHKVWITSMRESGSRANLRDANLRDANLRGANLR
                     DANLRGADLRGANLRDANLRDANLCGANLCGANLRGANLRDADLRDANLRDANLCGANL
                     CGANLRGANLRDADLRDANLCGADLRGANLRDANLRGADLRGANLRDANLPDLTFVILG
                     EKYFISITNGEYVRAGCQNHTVEEWRKYSKQEIAEMDGRKALKFYPRLLDIIDFYIGKG
                     ERPDWLTSKEYADEVTE"
                     /name="pentapeptide repeat-containing protein"
     gene            4468..4746
                     /locus_tag="WI249_23175"
     CDS             4468..4746
                     /locus_tag="WI249_23175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001748038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WXS26436.1"
                     /translation="MKKFKGTPVSWSGKDVRICRQDRAGLQLGFIMTHDENRVAECEAN
                     AHLIAAAPELLEALQLLLNSWSNGSSKDISNAERKARSAISKALGEE"
                     /name="hypothetical protein"
     gene            4746..4871
                     /locus_tag="WI249_23180"
     CDS             4746..4871
                     /locus_tag="WI249_23180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000405108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WXS26437.1"
                     /translation="MEINKEQASEIIKLIEQALLDGFDDEILVSLHESLTKFVSE"
                     /name="hypothetical protein"
ORIGIN
        1 ttgccgccac cgttaggggg taagggggta tttgtattta ttgtcttttg tatattgtct
       61 tttgtgtttg actgattcgg taaattggtt tttaccgatt tggtgaaggt tagttttacc
      121 gatctggtaa atgttttacc gaatccgtta accttcgtct tccactcgga aatattttta
      181 ttcataccaa cctgacgccc cacctgagtg agaaccccca ttctgataag ctcgtttttg
      241 gcggtagaac atttggttgg cgccatgcca gtgagttcag cgaactgttc atttccgatc
      301 caatctattt ttttgttata accgtatgtc ttgcgccaca cagccataac aatcagtagc
      361 tgatgttgag taagcccaga aagcatgaca gcttccagca gtgtatttgc agtccgggtg
      421 tagccatcgt cgagttctgc cacgcgatgc tccacaacct ccagatgagg ttttatcggt
      481 gtaactgttg caagattact catgaccttt cctcttcagt attagcttca ctttctccaa
      541 ctcagcccga aatcgaccag gctgtttgaa gctggataag aaccgatcac gtagtatgtt
      601 tttgtgtaat ttgtcctggt caggactgag ttgttttggc ataattactc ctgtggattg
      661 atccagtaat tccctcagaa ttgcatatca atttgcttaa aatcctcggt ggcagccggg
      721 gattttttct ttgtgatttc atcaagcgca tacttaaaag ccctgctaat cggactgatg
      781 tctgatgcca ttccgaaagc acacaagacc gaagcaataa atctccagtc cgttctgctt
      841 atcttagatt catgacagcc aatcatcttt gccagaccgc gctgggtaag cgttgacagg
      901 ttgatgagta aatcagtttc agcgcgatca atttctcgct gtgttggctt gctgtaactt
      961 gcttgtgtca tttcttacta tctccatagg taaataattt gggtttttat cgtgcaccat
     1021 tgacagtcat ccttgaccac gccgggcacc cgaccatata ccgggccgtt cggttatcaa
     1081 aagttgctca ctggttactt gccgcctgaa ggcgacaggg ttcatgctgc gctgttacgg
     1141 gtggtcgcaa agaccaggct ttctttcagt actggcatgt gctttttgaa aaccttgctt
     1201 gccacttcga tcgccagtgc cttcttctgg agaagccctg cggtatccgt aagcaatctg
     1261 gtctaaatag ccaaccgttg tgttggctag ttctgccaac cgcacccact cagcggaagt
     1321 cgcatccttt cgccagcgga gtaattcgtt gttcataggt tgctccgggt taacgttaca
     1381 attggagttt agcgttatgc taaatactaa gcaagcatca tttagcaatt tgcacattta
     1441 tcgcattgct aaagaatgcg agactcaggg aatggaaaac aaagaaatca gaaaagccaa
     1501 cctagaggct ttgtacgaag agcggaaacg ttcgactgga atgactaagg cacagttcgc
     1561 tgaactcata gacaccagtc ctgccgccct gagtcagctt ctaggagaaa acccgaatcg
     1621 caacatcggg gataagctgg ctagaaaaat tgaaaatgct ttgggtctgt cattcggttg
     1681 gctggatgtt ttgcactcca aagaaaacac gggtaacgtt gcatttcgag ggatgaacga
     1741 cacgaaagga agttatcctg taatcagttg gataagcgcg gggcaatgga tggaagctgt
     1801 agaaccttat catcgcagat caatagatcg ctggtatgac accactgtgg tgtgctcaga
     1861 aggattcatt ctggctggat gttaaggggg actctatgac atcccctgtt ggcctgagta
     1921 ttccagaggg tgcggcaatt cttgttgatc cggaagtcga gccacggaac ggaaagcttg
     1981 ttgtcgctaa gcttgacgga gacaatgagg ccactttcaa gaagcttgtc atagacgctg
     2041 gccgccgatt ccttaaaccg cttaacccgc agtatcccat gcaagaaata aatggtaatt
     2101 gccggatcat tggcgttgta gtagacgcga agattctcaa cttgccgtaa agactcacga
     2161 tattccccta agcccgccaa tgagcgggct tttttttgct tttcgttttc tacaccacct
     2221 caatgctaaa aattaattcc tttattaatc aaaaagctaa acttcacgcg ccagtaattt
     2281 agcattttgc tattgccaat gatttagcat cacgctaaat ttaacccatc gagacagcac
     2341 atcgtttcgg tcagtcgaac ggcgcgacag taaaccatgc gtcggcccca tggcgagcca
     2401 atggacggtt ccaatatgcg ggattgctta acctgatgtt ttctttttag agagatcaac
     2461 atgttaagtg attgcataga gcataaccaa aaacaaaatt acggtaccac ttcaactcga
     2521 atcaacggta agacagtggc gataaggctt cacaggaaag cctactgcga atcagtcggt
     2581 gtctctattg agagcattaa aggacgtgta gtgctgcata tgtgtgataa cccgcgatgc
     2641 atcaacccag agcatttggt gcttggtact cagttggaaa acgtaaggga tatggaaatt
     2701 aaagggagag gaaatcacgt ctctggagag agaaacggtt ccgcgaaact taccgcagaa
     2761 gatgttcttg aaatacgaag ctccacgctg agtaacagga aaatagcagc catctatgga
     2821 ctgtctgatt cgtacattag ttcaattagg cttcgcaaga agtggaaaca catatagccc
     2881 gcctaggcgg gttcaggatg aacggcaatg ctgctcacta caaaagaaca tttccataac
     2941 cggagggtta ttgaagtgtt tttgttagga ggtttaagtg gatcttactc aagtgtctgt
     3001 aagggagatt cttcattaca atcctgtgag tggtgacttt tattggaagc cgagagcaaa
     3061 gcatttgttt gcggataaca gagctgcctt gacgtggaac aagaagtatc caggtaaaaa
     3121 ggctggatca cctgacaaca agggttatct gagaataaat attggaggta aaaaatttaa
     3181 gtctcacaga cttgcatggc tttacgtgca tggctactgg cctgatgtga ttgatcacat
     3241 aaacggcgtt aaggatgaca acagaatctc caatttaaga agcgtttctt tcaaagagaa
     3301 tatgaaaaac atgcctttaa aatcatcttc atcaactgga gttacaggtg ttgaagcaag
     3361 aaaagagcat gggttttatg ttgcatcgat aactgtggat ggaaaacgaa aatacctagg
     3421 ctcattcaaa cttttagatg atgccaaaca agcaaggaaa gaagccaatg cactatatgg
     3481 ctttcatgaa aatcatggac ggagccagta aacgtgtttc aagagccatt tcgcttgccg
     3541 gaacgcgtca gaaggaagtt gaaggaggat ctgtacttct tccagacgta gcactttacg
     3601 cggctggtca tcgtaagtgt gggcaaatta ccgctagata attattcagg cagcaatcat
     3661 ctaatcaggt cgcaatgcgg ccttttttat tgccaaaatt taaggaataa caacatgaat
     3721 tcagcagatt tatcgaagat tcttgaagag cacaaggtgt ggattacctc aatgcgtgag
     3781 agcggatcga gagccaacct gcgcgatgcc aacctgcgcg atgccaacct gcgcggtgcc
     3841 aacctgcgcg atgccaacct gcgcggtgcc gacctgcgcg gtgccaacct gcgcgatgcc
     3901 aacctgcgcg atgccaacct gtgcggtgcc aacctgtgcg gtgccaacct gcgcggtgcc
     3961 aacctgcgcg atgccgacct gcgcgatgcc aacctgcgcg atgccaacct gtgcggtgcc
     4021 aacctgtgcg gtgccaacct gcgcggtgcc aacctgcgcg atgccgacct gcgcgatgcc
     4081 aacctgtgcg gtgccgacct gcgcggtgcc aacctgcgcg atgccaacct gcgcggtgcc
     4141 gacctgcgcg gtgccaacct gcgcgatgcc aacctgcctg atctaacttt cgtaatcctg
     4201 ggtgagaaat acttcataag tataacgaac ggtgaatatg tacgagcagg atgccagaac
     4261 cacacagttg aggaatggag aaaatatagt aagcaggaaa ttgctgagat ggatggtcgt
     4321 aaagctctta aattttatcc acgtcttctg gacattatcg acttctatat tggtaaaggt
     4381 gaacgcccgg attggttaac aagtaaagaa tatgcagatg aagtaactga gtaagcgtat
     4441 ttttggcagc gagacacaga ggtgaatatg aaaaagttta aaggtacgcc agtcagttgg
     4501 agcggaaagg atgtacgcat ttgcaggcaa gatagagctg ggttgcagct tggttttatc
     4561 atgacccatg acgaaaatcg cgtagctgaa tgtgaggcca atgcacactt gatagcagca
     4621 gctccggagt tattggaagc gctacaattg cttctcaact cctggtcaaa tggtagttct
     4681 aaagatattt caaacgctga gagaaaagct cgctcagcca tcagcaaggc tcttggggag
     4741 gagtgatgga aataaataaa gagcaagcat cagaaattat caaacttatc gaacaagcat
     4801 tacttgatgg gtttgatgat gaaattttgg tttcgctaca cgaaagtctt accaaatttg
     4861 tcagcgaata agcacctaat gaccatttta atagtggtca ttgt
//
