LOCUS       CP148778                4652 bp    DNA     circular BCT 25-MAR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Infantis strain
            Z1323HSL0097 plasmid pZ1323HSL0097-3, complete sequence.
ACCESSION   CP148778
VERSION     CP148778.1
DBLINK      BioProject: PRJNA1087122
            BioSample: SAMN40424081
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Infantis
  ORGANISM  Salmonella enterica subsp. enterica serovar Infantis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4652)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Complete genome sequence of Salmonella enterica subsp. enterica
            serovar Infantis isolated from humans, companion and industrial
            animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4652)
  AUTHORS   Chae,J.-C., Oh,J.Y., Jeong,J.H. and Kwak,S.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Division of biotechnology, Jeonbuk National
            University, kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 117X
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/19/2024 14:33:09
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,110
            CDSs (total)                      :: 4,987
            Genes (coding)                    :: 4,612
            CDSs (with protein)               :: 4,612
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 375
            CDSs (without protein)            :: 375
            Pseudo Genes (ambiguous residues) :: 0 of 375
            Pseudo Genes (frameshifted)       :: 285 of 375
            Pseudo Genes (incomplete)         :: 111 of 375
            Pseudo Genes (internal stop)      :: 24 of 375
            Pseudo Genes (multiple problems)  :: 41 of 375
            Pseudo Genes (short protein)      :: 1 of 375
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4652
                     /organism="Salmonella enterica subsp. enterica serovar
                     Infantis"
                     /mol_type="genomic DNA"
                     /strain="Z1323HSL0097"
                     /serovar="Infantis"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:595"
                     /plasmid="pZ1323HSL0097-3"
                     /geo_loc_name="South Korea"
                     /collection_date="2023-06-15"
     gene            join(4591..4652,1..376)
                     /locus_tag="WI245_25535"
     CDS             join(4591..4652,1..376)
                     /locus_tag="WI245_25535"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WXS09278.1"
                     /translation="MPKRGKSIRSSSRNEETKPSKSTAKTTDRFISISFKHFHNVDDVG
                     QSINTWKDDGSLPDLIEKLVYLTANGITKVISDGVFTNYTRFPESAVNDFRCPDEISSD
                     EDWGVIKNIGGQKRRVAGFLRDNVFYIVFFDRDHRFWKSQK"
                     /name="hypothetical protein"
     gene            complement(613..726)
                     /locus_tag="WI245_25540"
     CDS             complement(613..726)
                     /locus_tag="WI245_25540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WXS09279.1"
                     /translation="MHEPPVQSDCCACSGNYRLESNPERHAKAPLAAATGN"
                     /name="replication initiation protein"
     gene            complement(1363..1557)
                     /locus_tag="WI245_25545"
     CDS             complement(1363..1557)
                     /locus_tag="WI245_25545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WXS09280.1"
                     /translation="MNKQQQTALNMARFIKSQSLTLLEKLDALDADEQAAMCERLHELA
                     EELQNSIQIRFEAESETGT"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            3288..4586
                     /locus_tag="WI245_25550"
     CDS             3288..4586
                     /locus_tag="WI245_25550"
                     /inference="COORDINATES: protein motif:HMM:NF024700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="WXS09277.1"
                     /translation="MMVNFSLSNAFSFMEAQNMSMLAVSSSKDDINLANVVSVRDERIL
                     KSALIFGANASGKSNLMKTISLMKDIVLHSVQAIESGITKNVVPFLLDEAGPTKPSEME
                     MTFIADGIKYRYGLSLFQGKIKEEWLYYTPKTRETILFERDGQLIEINKAAFSESNLFI
                     KDGVIQKTREDVPFVSVVAGFNGEHSKRVVNWFSNVVFISGSNEGMFTGITMKLINESE
                     DFKAWLKKILPAFQINDIYLDEVAPEFPFGNIKTDDDNLKNLFSSIQNFAKNQKVFSLR
                     VVKKTANGEISVPIDFESEGTKKIVYLLGPIYNAMINNNLLLVDEFDSKFHTLLSKFLF
                     RIFHAQSEGFSQVIAAVQDVNLMNTDCFRRDQIWFVDKDVKSGSSHLYSLVEYKEKQRS
                     LKPSYGNDYLSGAFDAIPLFDNLNEFEKLMPEG"
                     /name="ATP-binding protein"
     Typing          1206..1290
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.837"
                     /coverage="100.0"
                     /evalue="1.41e-35"
     Typing          1583..1665
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="91.765"
                     /coverage="92.0"
                     /evalue="2.04e-24"
     Typing          1791..2046
                     /name="MOBF"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="94.574"
                     /coverage="89.0"
                     /evalue="2.65e-108"
     Typing          complement(655..1192)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="86.631"
                     /coverage="99.0"
                     /evalue="1.77e-167"
ORIGIN
        1 gagcacagcg aaaacgactg atagatttat atctattagt tttaagcatt ttcataacgt
       61 cgatgatgtt gggcagtcca taaatacatg gaaagatgat ggtagcctac ctgatctcat
      121 tgaaaaattg gtttatctaa cggcgaatgg aatcactaaa gtgatttctg acggtgtgtt
      181 tactaactac actcgatttc ctgagtcagc tgtaaacgat tttagatgcc cagatgagat
      241 atcctctgat gaggattggg gggttataaa aaacattggc gggcagaaaa gaagagtcgc
      301 cggatttctg agagataatg tgttctatat cgtgtttttt gatagagatc atcgcttctg
      361 gaagagtcaa aaatagatga gatacagttg tattgtatgt taagaaaaga tcttcttgag
      421 attgtgatgc tctcgtcgta atctcttgct ctggaaacga aaaaaccgcc tcagcaaggc
      481 ggtttttcga aggttctcag agctagcaac tctttgaacc gcggtaactg gcttaagagg
      541 agcgcagtaa ccaaatctgt cctttcagtt tagccttaac tggcacataa cttcaagact
      601 aactcctcta aatcagttac cagtggctgc tgccagtggc gcttttgcat gtctttccgg
      661 gttggactca agtcgatagt taccggaaca ggcgcagcag tcggactgaa cggggggttc
      721 gtgcatacag tccagcttgg agcgaactgc cttcccggaa ctgagtgtca ggcgtggaat
      781 gagagaccgc ggccataaca gcggaatgac accggtaaac cgaaaggcag gaacaggaga
      841 gcgcacgagg gagccaccag gggaaacgcc tggtatcttt aagtcctgtc gggtttcgcc
      901 accactgatt tgagcgtcag atttcgtgat gcttgtcagg ggggcggagc ctatggaaaa
      961 acgccagcgg cgcggccttc ctcctgttcc tggtcttttg ctcacatgtt ctttcctggc
     1021 cttatcccct gattctgtgg ataactgtgt taccgttttt gtgtgagtca gtaccgctcg
     1081 ccgcagtcga acgaccgagc gtagcgagtc agtgagcgag gaagcggaaa agcgcctgga
     1141 cagtgcatct tctccttacg catctgtgcg gcatttcaca cccggcatgg cgtacttttc
     1201 atacaatccg cactgatgcc gcatggttaa gccagtatac actccgctat cgctacgtga
     1261 ctggttcagg gcttcgcccc gaaaccccct gacgcgccct gacgggcttg tctgctgacg
     1321 aaaacgccca cgggaaagcc gtgaccgcct ccgtcagctt cgttatgttc ctgtttcact
     1381 ttcggcctca aagcgaatct ggatgctgtt ctggagttct tctgcgagtt cgtgcagtcg
     1441 ttcgcacatg gccgcctgtt cgtcggcatc cagagcatcc agtttttcaa gcagtgtcag
     1501 gctctggctt ttgataaatc gcgccatatt cagcgcagtt tgttgttgtt tgttcacctt
     1561 ccgttgttct ccgtcagttc cgggtgtcgg ggggagccct gaccaggtgg taattgtgat
     1621 agcgtcgcgt gtgacggtat tacaattaca catcctgtcc tgtttcaact gataaataat
     1681 ccctgtgcag tacagccgct gttgcataaa atttcgctct gcgtcgagtg tttcttaatc
     1741 aagaattccg ctgatactcc ggaaaaacgc gagtctgttc tcatgcctga aatgcccaca
     1801 ccccacgcaa aaacaatttt ttgctgattt ttctttataa atagagagtt atgacaaatt
     1861 agtttctctt gctctctttg tgatatttaa aaaagcggtg tcggcgcggt gttgtagctg
     1921 cgccgacacc gctttgtagg ggtggtactg actattttca taaaaaacat aattttatat
     1981 taggggtgct gctagcggcg cggtgtgttt ttttacagga cgcccctggg ggcgctgcta
     2041 ggggtgtctg ttcagatatg tagcaatgag tcagggattc acgaattgaa aatgtccgaa
     2101 aatatgtctc atgggcactg tatgcgccca aaccgatcgc cattcagttt catgcatagt
     2161 catgcaacgc gctgaaaacg ttcctgacgc atttttccgg tttaccctgg gaaaacatcc
     2221 ctttttgcgg tgttcgcggc agaatcgcgt tcagcgcgtt ttagcggtgc gcgcaatcgg
     2281 atgttatggt aaatccagct gattggcagg tataaaaaag ccgtccgtag acggcctagt
     2341 aagttacttc gtctttgtca tcactaccaa ttcccatcgg atgtcacctg ggacattatg
     2401 ctgcctatga ttttgcggtg gcaaaggatc atctttattg cacgtcactt catcaccaca
     2461 gttcgtgcag cggtaaatgc cggaagccgg acaagtattt cccggcttat agtaataccg
     2521 ccatacactc ccttcaggct cggttgtttt tgttaaaaat ttcgctgtgc tatctacata
     2581 aaaggccatg ttgctttcct tacataaact aagttaggga ccgaagcttg catgcttcgg
     2641 tggttattgt tttttctttt cccgattaat tgggatctta aacattcccc cgttaggacg
     2701 ggttatccgt ttgcccttta ccgttatgta agggcgaaaa atgtatgcct gaggctcgtc
     2761 cgtctgcatg ttgcatttcc tattttcgcc acatgaatgt tgatttttgc tatcaaaatt
     2821 gtactgtagc aaccaacaaa tcttgtggct ggctttatca aagcacttga ggtggtactc
     2881 aagcgccgca tttgcgtatg gtttgttacg ggttagttct ggtggtacag gctaacccac
     2941 ttacttcaac aatttttgct tctcctcatt catgtttcac tccctacgta tttttttaca
     3001 gtgtcagcgc cactgagcat aaacgcgaca aaaaggaacc atccccaccc agataccgag
     3061 tgaaaagcca gcactgctga gctaatcact gaggcaaatg ggaccatttg gtatagaaaa
     3121 aacttcatat acacctcttt ttaagctggt cgttaactta tctactcata atgtgctgtc
     3181 tattggaccc ttttgttgtt ttagtacggg gttatgctat tcttaatcta gaattttgtc
     3241 aatattgtgc aatttttgag tttaagggtg ttgttagggg tgttcttatg atggttaact
     3301 ttagtctttc aaacgcattt tccttcatgg aagctcaaaa tatgagcatg ttggcggtgt
     3361 cgtcatcgaa agacgatata aacttggcta atgtagtgtc agtaagggat gagcggatac
     3421 tgaagtctgc tttgattttc ggagctaacg ctagcggaaa atctaatctc atgaagacaa
     3481 tatctttaat gaaagatatt gtcctgcatt ctgtgcaagc tatcgaaagt ggcattacga
     3541 agaatgtagt ccctttttta cttgatgagg cggggcctac taaaccatct gaaatggaaa
     3601 tgacttttat tgcggatggg attaaataca gatacggatt atctttattt caagggaaga
     3661 taaaagaaga gtggttgtac tacacgccaa aaacaaggga gactattctc tttgagcgag
     3721 atggtcaact tattgaaata aataaagcag catttagcga gtcaaatctt tttataaagg
     3781 atggggtcat tcagaagaca agagaagatg ttccctttgt ttctgttgtt gctggattta
     3841 atggggagca ctcaaagcgt gttgtgaatt ggtttagtaa tgtggtattt atttctggtt
     3901 ctaacgaagg aatgtttact ggaattacca tgaagcttat aaatgaatct gaagatttta
     3961 aagcttggct aaaaaaaata ttaccagcct ttcagattaa tgatatttat cttgatgaag
     4021 ttgcgcctga attcccgttt ggcaacataa aaacagatga tgataattta aaaaatttat
     4081 tcagctcgat tcagaatttt gcaaaaaatc aaaaagtatt ttctcttaga gtcgtgaaaa
     4141 aaactgctaa tggggagatt tcggttccca ttgattttga atcagagggg accaaaaaga
     4201 tagtctatct ccttgggcct atttataacg ccatgattaa caataactta ttattggttg
     4261 atgagttcga ttcaaagttc catacccttt tatctaagtt tttatttagg atatttcatg
     4321 cgcaaagtga agggtttagc caagtaatcg ctgcagttca ggatgttaat ttaatgaata
     4381 ctgattgctt tagacgagac caaatttggt ttgttgacaa ggatgtaaag tcagggagta
     4441 gccatcttta ttctttggtt gagtacaaag agaaacaaag atcattgaag ccatcatatg
     4501 ggaatgatta tttatcaggt gcttttgatg caatcccgtt atttgataat cttaatgaat
     4561 ttgaaaagct aatgcctgag ggatgattat atgccaaaga gaggcaaaag cattcgaagc
     4621 tcttcgagga atgaggaaac aaaaccttca aa
//
