LOCUS       CP143334                5720 bp    DNA     circular BCT 01-FEB-2024
DEFINITION  Enterobacter hormaechei strain 2023CB-00605 plasmid unnamed3,
            complete sequence.
ACCESSION   CP143334
VERSION     CP143334.1
DBLINK      BioProject: PRJNA288601
            BioSample: SAMN38182632
KEYWORDS    .
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 5720)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Pathogen: clinical or host-associated sample
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5720)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2024) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease submission group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.9.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 50.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/25/2024 15:23:18
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,200
            CDSs (total)                      :: 5,080
            Genes (coding)                    :: 4,943
            CDSs (with protein)               :: 4,943
            Genes (RNA)                       :: 120
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 137
            CDSs (without protein)            :: 137
            Pseudo Genes (ambiguous residues) :: 0 of 137
            Pseudo Genes (frameshifted)       :: 43 of 137
            Pseudo Genes (incomplete)         :: 101 of 137
            Pseudo Genes (internal stop)      :: 13 of 137
            Pseudo Genes (multiple problems)  :: 19 of 137
            Pseudo Genes (short protein)      :: 1 of 137
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..5720
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="2023CB-00605"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:158836"
                     /plasmid="unnamed3"
                     /geo_loc_name="USA"
                     /collection_date="2023"
     gene            1..1542
                     /locus_tag="V1237_25970"
     CDS             1..1542
                     /locus_tag="V1237_25970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000050481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0004803 - transposase activity [Evidence IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS91-like element ISCR1 family transposase"
                     /protein_id="WVJ08391.1"
                     /translation="MSLARNATASQSPTQTNGYERHQPDQTLLYQLVEQHYPAFKASLE
                     AQGQHLPRYIQQEFNDLLQCGRLEYGFMRVRCEDCHHERLVAFSCKRRGFCPSCGARRM
                     AESAALLIDEVFPKEPIRQWVLSFPFQLRFLLARHPQLMGQVLSIVYRTLSTHLIKKAG
                     YTKASAQTGSVTLIQRFGSALNLNVHYHMLFLDGVYAEDDYGKQRFHRVKAPTYDELNT
                     LAHTLSHRIARCMEKRGILERDAENTWLTLEEGEDDTLTQLHGASVTYRIAVGPQQGRK
                     VFTLQTLPGREDKADSSSRVANHAGFSLHAGVMAEAHQRDKLERLCRYISRPAVSEKRL
                     ALTANGQVRYELKTPYRNGTTHVIFEPLDFIAKLAALVPKPRVNLTRFHGVFAPNSKHR
                     VQVTPAKRGKKPDKSEGLDTNWRDKSPAERHRAMTWMQRLKRVFNIDIEVCEHCGGHVK
                     VIASIEDPKVIEQILKHLKQKTAKANAAKQRELPPERAPPLTPSLFDPSQSRLFD"
                     /name="IS91-like element ISCR1 family transposase"
     gene            complement(1775..2314)
                     /locus_tag="V1237_25975"
                     /pseudo=""
     CDS             complement(1775..2314)
                     /locus_tag="V1237_25975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460650.1"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /name="ABC transporter substrate-binding protein"
     gene            2849..3301
                     /locus_tag="V1237_25980"
     CDS             2849..3301
                     /locus_tag="V1237_25980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SgcJ/EcaC family oxidoreductase"
                     /protein_id="WVJ08392.1"
                     /translation="MNKLLSLVVSLALLPGAVFAASTPDCVKVNKAQIEALFDKWNESL
                     KTGNAQTVSENYLSDAVLLPTVSNKARLTDAERVDYFEHFLAKKPTGKIDMRTIRLGCN
                     KAIDTGTYTFTFADKSTVSARYTFTYAWDGKEWKISTHHSSAMPEG"
                     /name="SgcJ/EcaC family oxidoreductase"
     gene            complement(3343..3987)
                     /locus_tag="V1237_25985"
     CDS             complement(3343..3987)
                     /locus_tag="V1237_25985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017900990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrB2"
                     /protein_id="WVJ08389.1"
                     /translation="MALALVGEKINRNRFTGEKIENSTFFNCDFSGADLSGTEFIGCQF
                     YDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNASALGIEIRHCRAQGADFRGASFMNM
                     ITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWMGAQVLGATFSGSDLSGGEFST
                     FDWRAANFTHCDLTNSELGDLDIRRVDLQGVKLDNYQASLLMERLGIAIIG"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrB2"
     gene            complement(4083..4277)
                     /locus_tag="V1237_25990"
                     /pseudo=""
     CDS             complement(4083..4277)
                     /locus_tag="V1237_25990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003833280.1"
                     /note="incomplete; partial on complete genome; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /name="helix-turn-helix domain-containing protein"
     gene            4277..4483
                     /locus_tag="V1237_25995"
                     /pseudo=""
     CDS             4277..4483
                     /locus_tag="V1237_25995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000679427.1"
                     /note="incomplete; partial on complete genome; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="SMR family transporter"
                     /name="SMR family transporter"
     gene            4477..5316
                     /gene="sul1"
                     /locus_tag="V1237_26000"
     ARG             4478..5313
                     /name="sul1"
                     /gene="sul1"
                     /gene_name="sulfonamide-resistant dihydropteroate synthase
                     Sul1"
                     /tool="amrfinderplus"
                     /drug_class="SULFONAMIDE"
                     /identity="100.0"
                     /coverage="100.0"
     ARG             complement(3347..3987)
                     /name="qnrB2"
                     /gene="qnrB2"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrB2"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     ARG             complement(3344..3987)
                     /name="QnrB20"
                     /gene="QnrB20"
                     /gene_name="quinolone resistance protein (qnr)"
                     /tool="rgi"
                     /drug_class="fluoroquinolone antibiotic"
                     /identity="99.53"
                     /coverage="94.69"
ORIGIN
        1 atgtcgctgg caaggaacgc cacggcgagt caatcgccca ctcaaacaaa cggttacgaa
       61 cgccaccaac ccgaccagac gctgctctac cagctggttg agcagcacta cccagccttc
      121 aaagcctcac tcgaagccca aggtcaacac ctgcctcgct acatccaaca agaattcaac
      181 gacctcctcc aatgtggccg tctggagtat ggtttcatgc gggttcgctg cgaggattgt
      241 catcacgagc gtctggtcgc cttcagctgt aaacgacgcg gcttttgccc tagctgcggt
      301 gcccgccgga tggccgagag tgcggcgctg ctgatagacg aagtcttccc caaggagccc
      361 attcgccagt gggtgctcag ctttcctttc cagctacgct ttttgctggc tcgccatccc
      421 cagctgatgg gccaggtctt gagtatcgtc tatcgtacac tctcaactca tctgatcaaa
      481 aaagccggtt acaccaaagc ctctgcacaa actggctcag tgactcttat ccaacgcttt
      541 ggctccgcgc taaatctcaa tgtccactac cacatgctgt ttctcgatgg tgtctatgcc
      601 gaagatgact atggcaagca acgcttccat cgtgtcaagg cacccactta cgatgagctg
      661 aatacgctcg ctcacaccct cagccatcgc atcgctcgct gcatggaaaa gcgtgggatt
      721 ttggagcgtg atgccgagaa tacgtggttg acactggaag agggcgaaga cgatacgctg
      781 actcaattac atggtgcttc ggttacgtat cgcattgccg tcggccccca gcaagggcgc
      841 aaagtcttca ccctgcaaac cttgccaggg cgtgaggata aagccgactc aagcagtcga
      901 gtagccaacc atgctggttt ctcgctacac gccggtgtga tggccgaagc gcatcagcgg
      961 gataagcttg agcgcttgtg tcgctacatt agtcggccag cggtttcaga aaaacgtctg
     1021 gcattaaccg ccaatgggca ggtgcgttac gagctcaaaa ctccgtaccg caatggcacc
     1081 acccatgtga tcttcgagcc gctggacttc atcgccaaac tcgctgcgtt ggtacctaag
     1141 ccgcgagtca acctcacacg cttccacggc gtctttgcac cgaacagcaa acaccgagtt
     1201 caagtaacac ccgccaagcg gggcaagaag cccgacaaat cggaaggtct cgatactaac
     1261 tggcgtgaca agagtcctgc agagcgccac cgcgccatga cctggatgca acgcctcaag
     1321 cgagtcttca atattgatat tgaagtctgc gaacactgcg gcggtcacgt caaagtgatt
     1381 gccagcatcg aagatccgaa ggtcattgag cagattctca agcatctgaa acagaaaaca
     1441 gccaaggcga atgccgccaa gcagcgtgag ctgccaccag aacgagcgcc gccactgact
     1501 cccagcctgt tcgatccatc acagagtcgt ctctttgact gacgacccca aatccaacac
     1561 tgctcaacac tgccaacttt taaacggggc ggtggggcag tttgtatctc tcgagctatc
     1621 aggctagaga ttttaccgcc aaatcgaacc ttattagagc ggtttaggct ggaccggcag
     1681 ttaaaattgg ggcttgagcg gtaaacgagt gagggaattt caggtaagat acttcggatg
     1741 aggagcaaaa aggtggttta tacttcctat accccataaa ggaggcatcc ggttgcgtta
     1801 agcggaattc aacggtgttg ttgtccagtt tgcgcacgct ttggacgtta tcggcaaact
     1861 gcaggctgtc gaagtagggg aaactgctgc cgttcacatt gtgccacgga tggtggcgat
     1921 caaagatgcg ctcgaaggta aacaccacat cgtctgcatt cagtttgcgg gtgggggtga
     1981 accaggccgt cttctgaaac tgaacgtcac gacgcagatg gaagcggtag gttgcgccgt
     2041 tatccagcac ctcccagctt tcagcaagct caggcaccag ccgataggtg tagggatcta
     2101 catcaagcag tcggtcatac aattgggccg ctaacgtatc gacgatgaga ccgctgctcg
     2161 ttttttgtgg gttgaacgta ttgacttgcc cgctgacgca atagacaaac ccactgtcac
     2221 ggatatcagc gtgcggagct tgctcaggcg cagcagcagc ctgaccactc agaaatccag
     2281 ccatcacgat cagagatgat aaaaccaggc gcataatttt aatggattat ataaagaggc
     2341 tatcttacta atacttaatg acatttgcca ttaccgtttg tttttgggag taacaggctc
     2401 gataagcgcg agttcaacac cgcgacatgg tcaaaattca tacctgctat ccactttgaa
     2461 tctactctgt taactatctt agcattttca tggcccatct gacttgctat aaacgtgggg
     2521 gcgtacctgt cgttgtttac tgattgatat cagtgtgtgc tcggaagatg gagtatggca
     2581 tcgataacga agtgtggagc gagcatttag agtgtcacta tcaatgctga actataatca
     2641 ttcaggaagc agtacacgtt atgtgagttg taatagctaa agtatctata attatttcaa
     2701 tatgttaatt ccattttttc ttcatggcat cttaatcttc tcacccattt atggtgatga
     2761 tttccattgg ttattaaatg cattttggct ttgatcctgg ttatgaacgg ttttctgttg
     2821 ccatttaact tctaatggaa tgaattgtat gaataaatta ctgagccttg ttgtttcact
     2881 tgccctattg cctggagccg tttttgcagc gtcgactcca gactgtgtga aggtgaataa
     2941 agcgcaaatc gaagcgctat ttgataagtg gaacgagtca ttgaaaacag gtaacgcgca
     3001 gacggtatct gaaaattatc ttagcgatgc ggtattgttg cctactgtat ccaataaagc
     3061 gcgtttaacg gacgctgaac gtgttgatta tttcgagcat tttcttgcga aaaagccgac
     3121 cgggaaaatt gacatgcgta ccattcgcct ggggtgtaat aaggcgatag acaccggtac
     3181 ctacacattt accttcgcgg acaaatcaac ggtttcagcc cgctacacat tcacttatgc
     3241 atgggacggt aaagagtgga aaatttccac acaccactct tcagcgatgc ctgaagggta
     3301 aaaagctgtg cagggggcgg aatattcacc gctccctgaa gactagccaa taatcgcgat
     3361 gccaagacgt tccatgagca acgatgcctg gtagttgtcc aacttaacgc cttgtaaatc
     3421 aacgcgccga atatctaagt cacccaactc cgaattggtc agatcgcaat gtgtgaagtt
     3481 tgctgctcgc cagtcgaaag tcgaaaactc gccgccggag agatctgaac cactgaacgt
     3541 cgcgcccagt acctgggccc ccatccaacg gttttcccac agctcacact tttccaacac
     3601 gactttcgaa aaattggcgt agcttagatt tgtgttagtg atatatgcac tgcaaaacca
     3661 ggtgcgagta gtgatcatat tcataaaact tgcgccgcga aaatctgcgc cttgcgcacg
     3721 acagtggcga atttcaatgc caagcgcact ggcattgcga aaatccgcca tggataaatc
     3781 acagctttta aaaatggcat ctttcagcat cgcacgacta aaattgcacc ctttctggct
     3841 ttcacgatca tagaactgac agccgataaa ttcagtgccg ctcaggtcgg cacctgaaaa
     3901 atcacagtta aaaaatgtac tattttcaat tttctcaccg gtgaagcggt ttctgttaat
     3961 tttttcgcca acgagtgcca gagccatatt ttgtgcctgt ttttttatac agtaatggcg
     4021 tcatggtaaa ccctgatgag gttatgcgtc aaatccgcca atataacatc tgcaaatgtg
     4081 cgttaaatct ggtgtttttt cagcaaagcg cgaagctgat ggtaagtcag acccagtaat
     4141 tcagcggctt ttttctggtt aaattttgcc tgctgtaagc tggtttgtag aaagtctttc
     4201 tcttgctgct gctggaattc acgcagatcc agcggtaacc ctacagacat cggtttagtt
     4261 tccggcgcct gcggctgcgc tggttctgaa atccatccct gtcggtgttg cttatgcagt
     4321 ctggtcggga ctcggcgtcg tcataattac agccattgcc tggttgcttc atgggcaaaa
     4381 gcttgatgcg tggggctttg taggtatggg gctcataatt gctgcctttt tgctcgcccg
     4441 atccccatcg tggaagtcgc tgcggaggcc gacgccatgg tgacggtgtt cggcattctg
     4501 aatctcaccg aggactcctt cttcgatgag agccggcggc tagaccccgc cggcgctgtc
     4561 accgcggcga tcgaaatgct gcgagtcgga tcagacgtcg tggatgtcgg accggccgcc
     4621 agccatccgg acgcgaggcc tgtatcgccg gccgatgaga tcagacgtat tgcgccgctc
     4681 ttagacgccc tgtccgatca gatgcaccgt gtttcaatcg acagcttcca accggaaacc
     4741 cagcgctatg cgctcaagcg cggcgtgggc tacctgaacg atatccaagg atttcctgac
     4801 cctgcgctct atcccgatat tgctgaggcg gactgcaggc tggtggttat gcactcagcg
     4861 cagcgggatg gcatcgccac ccgcaccggt caccttcgac ccgaagacgc gctcgacgag
     4921 attgtgcggt tcttcgaggc gcgggtttcc gccttgcgac ggagcggggt cgctgccgac
     4981 cggctcatcc tcgatccggg gatgggattt ttcttgagcc ccgcaccgga aacatcgctg
     5041 cacgtgctgt cgaaccttca aaagctgaag tcggcgttgg ggcttccgct attggtctcg
     5101 gtgtcgcgga aatccttctt gggcgccacc gttggccttc ctgtaaagga tctgggtcca
     5161 gcgagccttg cggcggaact tcacgcgatc ggcaatggcg ctgactacgt ccgcacccac
     5221 gcgcctggag atctgcgaag cgcaatcacc ttctcggaaa ccctcgcgaa atttcgcagt
     5281 cgcgacgcca gagaccgagg gttagatcat gcctagcatt caccttccgg ccgcccgcta
     5341 aatatctcct tttgggttgt taataaaaca tccaataagt tgactgtgcg tgaaaaagaa
     5401 agttttgtgt gatggcgttg aagatcgcac cgttaagctc ttatgtggga tggtgcagag
     5461 ctcgacgact accgataaaa cgcaaccgcc gcaaacagac aagaaaaagc cccaactgat
     5521 aacagttggg gcttcagtat tgtgattggt ggagcaatag caccctgaac ccaaaacctt
     5581 ctcgctcaac cggtagtggc tgataacaac tcgtgagggc tattgcgggt taagcattta
     5641 gcgatgtcta gggccagact ggacgtctga acgcaagccg ctgatactgt acataaccac
     5701 agtatcagcg gaggataccc
//
