LOCUS       CP137934                2025 bp    DNA     circular BCT 15-NOV-2023
DEFINITION  Acinetobacter baumannii strain 2023CK-00003 plasmid unnamed4,
            complete sequence.
ACCESSION   CP137934
VERSION     CP137934.1
DBLINK      BioProject: PRJNA288601
            BioSample: SAMN32801357
KEYWORDS    .
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2025)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Pathogen: clinical or host-associated sample
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2025)
  CONSRTM   Clinical and Environmental Microbiology Branch: Whole genome
            sequencing antimicrobial resistance pathogens in the healthcare
            setting
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JUN-2023) Division of Healthcare Quality Promotion, US
            Centers for Disease Control and Prevention, 1600 Clifton Rd,
            Atlanta, GA, USA
REFERENCE   3  (bases 1 to 2025)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-NOV-2023) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease submission group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 141.0x
            Sequencing Technology :: Oxford Nanopore GridION; Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 11/06/2023 11:37:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,062
            CDSs (total)                      :: 3,968
            Genes (coding)                    :: 3,875
            CDSs (with protein)               :: 3,875
            Genes (RNA)                       :: 94
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 93
            CDSs (without protein)            :: 93
            Pseudo Genes (ambiguous residues) :: 0 of 93
            Pseudo Genes (frameshifted)       :: 36 of 93
            Pseudo Genes (incomplete)         :: 54 of 93
            Pseudo Genes (internal stop)      :: 11 of 93
            Pseudo Genes (multiple problems)  :: 8 of 93
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2025
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="2023CK-00003"
                     /isolation_source="Tissue"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="unnamed4"
                     /geo_loc_name="USA"
                     /collection_date="2022-12-22"
     gene            complement(197..421)
                     /locus_tag="PJS95_20300"
     CDS             complement(197..421)
                     /locus_tag="PJS95_20300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000752628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WPF14845.1"
                     /translation="MADANTTAFEFLGKTVSFEYVRHIQITEQSSIDFREKVSGVITNI
                     VLSLNSEPEISINDGDFYSLSDLINFTVS"
                     /name="hypothetical protein"
     gene            complement(489..1493)
                     /locus_tag="PJS95_20305"
     CDS             complement(489..1493)
                     /locus_tag="PJS95_20305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000568086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_process:
                     GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage/plasmid replication protein, II/X family"
                     /protein_id="WPF14846.1"
                     /translation="MIDWASAILPCKHDPSKLISGVVMSFDPLGNNEWIVNKTLSVEGS
                     YSSKIQIKSHTDNQIYISGNPTKFLQGHNLFGSNDLVSIMDSCFEKLLTYDNLGLCPDP
                     FQRAAIKDGYYELTRVDVNETWHLKNKNEVLAWIRAVGETAILKHRGAGQFSGDTAYFG
                     KNSRRWSLKCYSKGLEILAKGHKLPQELCIPEMIEYANKALRIEGVIRQLELKRRHLNV
                     AANWDIDTAEVLLLEYISKLEMSDVYMLKDDVLDSLPHRLRLTYQSWLNGDDLKQILPH
                     NTFYRYKKALREYGIDISTKSPKEKNNVIPLIRVLEAKPVGIPDWAYEKGLVA"
                     /name="phage/plasmid replication protein, II/X family"
     gene            complement(1490..1768)
                     /locus_tag="PJS95_20310"
     CDS             complement(1490..1768)
                     /locus_tag="PJS95_20310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001143137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WPF14844.1"
                     /translation="MPTQKPRIALTVPDEINQTLDRLYELTGTPKSKLIVEMLEQYVPI
                     LEQVVDTLEKIKSDKENGKEIAKKFAQDMLFDGQEMLGIMAKEARDL"
                     /name="hypothetical protein"
ORIGIN
        1 aaagggagct gtaatcagag agggaagttt caagattttt atggaatcag ttcactcgta
       61 gacactcgct ctggaactaa aggttatatc agtaatattt agtagcgcag gataggcaaa
      121 tgtattgcaa atggtagttt tgtcatacaa aaaaagcgcc acatggacgc ttttggggtg
      181 gaatctagtc ctatatttag gaaactgtga aattaattaa atcagatagg gagtaaaaat
      241 ccccatcatt tatagaaatt tcaggttcag aattgagact gagaacaata ttagtgatga
      301 ctccagaaac cttttctcta aaatcaatcg aagattgttc agttatttga atgtggcgga
      361 catattcaaa tgaaacagtc ttgcctaaaa attcgaaagc agtagtattg gcatcagcca
      421 tgatgatctc ctcgaaagat cgatgtggtt agctgtatag ggggattgcc gtccctctat
      481 gcagcggttt aagcgactag acccttttca taagcccagt caggaatacc tacaggtttt
      541 gcttctaaaa cccgaattaa tggaattaca ttatttttct ctttaggtga ctttgtagaa
      601 atatctatcc catattcacg aagagccttt ttataacgat aaaaagtgtt atggggtaaa
      661 atctgcttca gatcatcacc atttagccat gattgatatg taaggcgtag gcgatgaggc
      721 aaagagtcaa gaacatcatc tttgagcata tagacatcac tcatttctaa tttagatata
      781 tattctagga gtaacacctc tgctgtgtct atatcccaat tagcagctac atttaaatga
      841 cgtcttttaa gctctaattg tcttataaca ccctctattc tcaaggcttt gtttgcatat
      901 tcaatcattt caggaataca taattcctgt ggtaatttat gaccttttgc caaaatttct
      961 aaacctttgg agtaacactt tagagaccat cggcgagaat ttttaccaaa ataagcagta
     1021 tcaccagaga attgaccagc cccacgatgt ttaagaattg ctgtttcacc tacagcccga
     1081 atccaggcta gaacctcatt tttatttttc agatgccaag tttcatttac atccacccta
     1141 gtcagttcat agtaaccatc tttaatagca gctctttgaa atgggtcggg gcataaacct
     1201 aaattatcgt atgtcaaaag cttttcaaaa caagaatcca ttattgaaac taggtcatta
     1261 gaaccgaata ggttatgacc ttgtaaaaat ttagttgggt tgcccgaaat gtaaatctga
     1321 ttatcagtat gagatttaat ttgaatcttt gaagaataag aaccctcaac actcaatgtt
     1381 ttattaacaa tccattcatt gttacccaat gggtcaaatg acataacaac gcccgatatg
     1441 agcttactag ggtcgtgttt acaagggagt attgcagatg cccaatcaat cataaatcgc
     1501 gagcctcttt agccataatg cctaacattt cctgaccatc aaaaagcata tcttgagcaa
     1561 attttttagc tatttcctta ccgttttcct tgtcagattt gattttttcc aaggtgtcga
     1621 ctacttgctc aagaatagga acatattgct ccaacatctc tacgataagc ttcgatttag
     1681 gcgtaccagt gagttcgtac aaacgatcta aagtttgatt aatttcatca ggaacagtta
     1741 aggcgattct aggtttttga gtaggcatat tgttttaggt gtaactattt tggattaatg
     1801 tagcactcta aaataacaaa gtaaatagaa taattcccga aagtggtaca aatgtgcagg
     1861 gggggaaatg tagtgtttat ctagtattgt ctcgtatcag aataccacta tggtacaaat
     1921 gtgcagtatt actaacactg cacaccccct cggcgacaag tctgcctgag cgggtgttgg
     1981 tgggtggata tgcgagcata gctcggttct tactgttctt aggca
//
