LOCUS       CP137929                2024 bp    DNA     circular BCT 15-NOV-2023
DEFINITION  Acinetobacter baumannii strain 2023CK-00001 plasmid unnamed2,
            complete sequence.
ACCESSION   CP137929
VERSION     CP137929.1
DBLINK      BioProject: PRJNA288601
            BioSample: SAMN32801359
KEYWORDS    .
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2024)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Pathogen: clinical or host-associated sample
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2024)
  CONSRTM   Clinical and Environmental Microbiology Branch: Whole genome
            sequencing antimicrobial resistance pathogens in the healthcare
            setting
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JUN-2023) Division of Healthcare Quality Promotion, US
            Centers for Disease Control and Prevention, 1600 Clifton Rd,
            Atlanta, GA, USA
REFERENCE   3  (bases 1 to 2024)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-NOV-2023) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease submission group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 84.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 11/06/2023 11:17:54
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,894
            CDSs (total)                      :: 3,800
            Genes (coding)                    :: 3,674
            CDSs (with protein)               :: 3,674
            Genes (RNA)                       :: 94
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 37 of 126
            Pseudo Genes (incomplete)         :: 90 of 126
            Pseudo Genes (internal stop)      :: 12 of 126
            Pseudo Genes (multiple problems)  :: 13 of 126
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2024
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="2023CK-00001"
                     /isolation_source="Tissue"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="unnamed2"
                     /geo_loc_name="USA"
                     /collection_date="2022-12-27"
     gene            complement(join(1866..2024,1..846))
                     /locus_tag="PJT01_19460"
     CDS             complement(join(1866..2024,1..846))
                     /locus_tag="PJT01_19460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000568086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_process:
                     GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage/plasmid replication protein, II/X family"
                     /protein_id="WPF18519.1"
                     /translation="MIDWASAILPCKHDPSKLISGVVMSFDPLGNNEWIVNKTLSVEGS
                     YSSKIQIKSHTDNQIYISGNPTKFLQGHNLFGSNDLVSIMDSCFEKLLTYDNLGLCPDP
                     FQRAAIKDGYYELTRVDVNETWHLKNKNEVLAWIRAVGETAILKHRGAGQFSGDTAYFG
                     KNSRRWSLKCYSKGLEILAKGHKLPQELCIPEMIEYANKALRIEGVIRQLELKRRHLNV
                     AANWDIDTAEVLLLEYISKLEMSDVYMLKDDVLDSLPHRLRLTYQSWLNGDDLKQILPH
                     NTFYRYKKALREYGIDISTKSPKEKNNVIPLIRVLEAKPVGIPDWAYEKGLVA"
                     /name="phage/plasmid replication protein, II/X family"
     gene            complement(843..1121)
                     /locus_tag="PJT01_19465"
     CDS             complement(843..1121)
                     /locus_tag="PJT01_19465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001143137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WPF18520.1"
                     /translation="MPTQKPRIALTVPDEINQTLDRLYELTGTPKSKLIVEMLEQYVPI
                     LEQVVDTLEKIKSDKENGKEIAKKFAQDMLFDGQEMLGIMAKEARDL"
                     /name="hypothetical protein"
     gene            complement(1574..1798)
                     /locus_tag="PJT01_19470"
     CDS             complement(1574..1798)
                     /locus_tag="PJT01_19470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000752628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WPF18518.1"
                     /translation="MADANTTAFEFLGKTVSFEYVRHIQITEQSSIDFREKVSGVITNI
                     VLSLNSEPEISINDGDFYSLSDLINFTVS"
                     /name="hypothetical protein"
ORIGIN
        1 gttatggggt aaaatctgct tcagatcatc accatttagc catgattgat atgtaaggcg
       61 taggcgatga ggcaaagagt caagaacatc atctttgagc atatagacat cactcatttc
      121 taatttagat atatattcta ggagtaacac ctctgctgtg tctatatccc aattagcagc
      181 tacatttaaa tgacgtcttt taagctctaa ttgtcttata acaccctcta ttctcaaggc
      241 tttgtttgca tattcaatca tttcaggaat acataattcc tgtggtaatt tatgaccttt
      301 tgccaaaatt tctaaacctt tggagtaaca ctttagagac catcggcgag aatttttacc
      361 aaaataagca gtatcaccag agaattgacc agccccacga tgtttaagaa ttgctgtttc
      421 acctacagcc cgaatccagg ctagaacctc atttttattt ttcagatgcc aagtttcatt
      481 tacatccacc ctagtcagtt catagtaacc atctttaata gcagctcttt gaaatgggtc
      541 ggggcataaa cctaaattat cgtatgtcaa aagcttttca aaacaagaat ccattattga
      601 aactaggtca ttagaaccga ataggttatg accttgtaaa aatttagttg ggttgcccga
      661 aatgtaaatc tgattatcag tatgagattt aatttgaatc tttgaagaat aagaaccctc
      721 aacactcaat gttttattaa caatccattc attgttaccc aatgggtcaa atgacataac
      781 aacgcccgat atgagcttac tagggtcgtg tttacaaggg agtattgcag atgcccaatc
      841 aatcataaat cgcgagcctc tttagccata atgcctaaca tttcctgacc atcaaaaagc
      901 atatcttgag caaatttttt agctatttcc ttaccgtttt ccttgtcaga tttgattttt
      961 tccaaggtgt cgactacttg ctcaagaata ggaacatatt gctccaacat ctctacgata
     1021 agcttcgatt taggcgtacc agtgagttcg tacaaacgat ctaaagtttg attaatttca
     1081 tcaggaacag ttaaggcgat tctaggtttt tgagtaggca tattgtttta ggtgtaacta
     1141 ttttggatta atgtagcact ctaaaataac aaagtaaata gaataattcc cgaaagtggt
     1201 acaaatgtgc aggggggaaa tgtagtgttt atctagtatt gtctcgtatc agaataccac
     1261 tatggtacaa atgtgcagta ttactaacac tgcacacccc ctcggcgaca agtctgcctg
     1321 agcgggtgtt ggtgggtgga tatgcgagca tagctcggtt cttactgttc ttaggcaaaa
     1381 gggagctgta atcagagagg gaagtttcaa gatttttatg gaatcagttc actcgtagac
     1441 actcgctctg gaactaaagg ttatatcagt aatatttagt agcgcaggat aggcaaatgt
     1501 attgcaaatg gtagttttgt catacaaaaa aagcgccaca tggacgcttt tggggtggaa
     1561 tctagtccta tatttaggaa actgtgaaat taattaaatc agatagggag taaaaatccc
     1621 catcatttat agaaatttca ggttcagaat tgagactgag aacaatatta gtgatgactc
     1681 cagaaacctt ttctctaaaa tcaatcgaag attgttcagt tatttgaatg tggcggacat
     1741 attcaaatga aacagtcttg cctaaaaatt cgaaagcagt agtattggca tcagccatga
     1801 tgatctcctc gaaagatcga tgtggttagc tgtatagggg gattgccgtc cctctatgca
     1861 gcggtttaag cgactagacc cttttcataa gcccagtcag gaatacctac aggttttgct
     1921 tctaaaaccc gaattaatgg aattacatta tttttctctt taggtgactt tgtagaaata
     1981 tctatcccat attcacgaag agccttttta taacgataaa aagt
//
