LOCUS       CP137454                3942 bp    DNA     circular BCT 08-NOV-2023
DEFINITION  Klebsiella pneumoniae strain 2022JQ-00839 plasmid unnamed4, complete
            sequence.
ACCESSION   CP137454
VERSION     CP137454.1
DBLINK      BioProject: PRJNA288601
            BioSample: SAMN34174867
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3942)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Pathogen: clinical or host-associated sample
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3942)
  CONSRTM   Clinical and Environmental Microbiology Branch: Whole genome
            sequencing antimicrobial resistance pathogens in the healthcare
            setting
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JUN-2023) Division of Healthcare Quality Promotion, US
            Centers for Disease Control and Prevention, 1600 Clifton Rd,
            Atlanta, GA, USA
REFERENCE   3  (bases 1 to 3942)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-OCT-2023) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease submission group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 20.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 10/25/2023 12:49:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,791
            CDSs (total)                      :: 5,670
            Genes (coding)                    :: 5,528
            CDSs (with protein)               :: 5,528
            Genes (RNA)                       :: 121
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 142
            CDSs (without protein)            :: 142
            Pseudo Genes (ambiguous residues) :: 0 of 142
            Pseudo Genes (frameshifted)       :: 53 of 142
            Pseudo Genes (incomplete)         :: 91 of 142
            Pseudo Genes (internal stop)      :: 24 of 142
            Pseudo Genes (multiple problems)  :: 21 of 142
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3942
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="2022JQ-00839"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed4"
                     /geo_loc_name="USA"
                     /collection_date="2022"
     gene            join(3581..3942,1..1075)
                     /locus_tag="QDT99_28945"
     CDS             join(3581..3942,1..1075)
                     /locus_tag="QDT99_28945"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WPA01072.1"
                     /translation="MYHKIIGGKKKKRQKNILKSVEYLLREKKPEEQKNVKILSGSKSD
                     IVNFNNYSINKDKSNPYVCGVLSFEEETIPEELKAKIITEFEDLLFSGVDPENRPPILW
                     VEHNDKNRVELNYLTFNQLQDKRAYTVYYDKSDRKLVNTYSEIINYENNLSSPFEEKPD
                     GVGKNTLINKPKIDTPEEKKRYIEELNNHILGKIINQELDNREETIKYIESLEGVKINR
                     IRKDRISIKCDIFKDDKPLVLRGDIYEENRDYSDYTREYTATINRDPELVKTKLRELKK
                     DYSAAIERRTSKNRERYKKPQNKNIQQNREVIKRENTDIEYINATSNIDFVKSQSFLLP
                     DDNDQNCDKGVKNELNNTTIKTETRTEETPTERTEREIDEVDQQQQYIDSRIEQVRTNQ
                     LRHRRTLNIAEERSRICRRSLHGFIQLFKRYIRPAQIFTRKKEIDEKFKLNKKRIEETY
                     KKEQTQNYTRSNNRRGYKPF"
                     /name="hypothetical protein"
     gene            1520..2932
                     /locus_tag="QDT99_28950"
     CDS             1520..2932
                     /locus_tag="QDT99_28950"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WPA01073.1"
                     /translation="MKDEIEDINELVAKRDWEDFKKTGFGKFFTANQMKQQELTYLNNK
                     ALDIVNEEDLFEIMSLIPQPFITSENIKKADILSVIYNNFIEETEIPLTLPIFSFFSFL
                     SAYCVKNNITYSMPLSEKKSPVNTWVTVLAPSGSAKTYSLGKIEDLIPIKPDGEKVIEQ
                     NFVKPSGPAKFIEEFSNLPDSRDGKSQYGFWIEDEVAQMFKQVEREGTPLSEIKEYFLK
                     AYDNKKLTRKSKKETIETKNLILVLFFINTFDSYVNNISSESMTDGLMRRFNLVYTEKD
                     KSRDFTDFPIYNEKKITDEILSDRFEDLFFNINPDVNYTFSENAFELYRKYFKIFWHRK
                     YKNILTDKENFYRTYMMQSWKFAVFYHLILKKEGTVIDGECLIYGMKISLLFANSMKKF
                     FDFKNKNISDSKREKQKDTLLKYADFLNSKPDATVRDFCRKFSIKKADAVSILKSLECS
                     GIEHSIFEVVSK"
                     /name="hypothetical protein"
     gene            3225..3572
                     /gene="mobC"
                     /locus_tag="QDT99_28955"
     CDS             3225..3572
                     /gene="mobC"
                     /locus_tag="QDT99_28955"
                     /inference="COORDINATES: protein motif:HMM:NF017524.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /protein_id="WPA01071.1"
                     /translation="MSYRDRYQRKHSITLCLNDDELKQVEELALNLQKPKATAIRELIL
                     NKQSTLKKSINRNINSDVVYQLNKIGVNINQISRAINTDIDKFISHDFAEDFLNVFEEI
                     ITEIELIKSKI"
                     /name="mobC"
ORIGIN
        1 tcaattgcaa gataaaagag catataccgt atattatgat aaatctgata gaaaactcgt
       61 taatacttat tctgaaataa ttaattatga aaataattta tcttcaccgt ttgaagaaaa
      121 gcccgatggg gttggtaaaa atacattgat aaacaaacct aaaattgaca caccagaaga
      181 aaaaaaacga tacatagaag aattaaacaa tcatatttta ggaaaaataa ttaatcagga
      241 gttagacaac agagaagaga caataaaata tattgaaagt ctcgaaggtg tcaaaattaa
      301 cagaataaga aaagatagaa taagcattaa atgcgatatt ttcaaagatg ataaaccatt
      361 agttttaaga ggtgatatat atgaagagaa cagagattac agcgattata caagagaata
      421 cacagcaaca atcaatagag atccagaact tgttaaaaca aagctcagag agcttaaaaa
      481 agactattca gcagcaattg aaagaagaac aagcaagaat agagaaagat ataaaaaacc
      541 acagaataag aacatacaac aaaatcgaga agttattaaa agagaaaata cagatattga
      601 atatatcaat gctacaagca atattgattt tgttaagtct caatcttttt tgttgcctga
      661 tgataatgat cagaattgtg ataagggggt aaaaaatgaa cttaacaata caacaattaa
      721 aactgaaaca agaacagaag aaacaccaac agaaagaaca gagcgagaaa ttgacgaagt
      781 tgatcagcaa caacaatata ttgattcgag aattgaacaa gttagaacaa accaacttag
      841 acacagaaga acgcttaata tcgctgagga acgatctaga atatgtagaa gatctctaca
      901 cggatttatt cagttattta agcgatacat acgaccagct caaatattta caagaaaaaa
      961 agaaatcgat gaaaaattca aactcaacaa aaaaagaatt gaagaaacct acaaaaaaga
     1021 gcaaacccaa aactatacga gaagcaacaa cagaagagga tataaaccgt tttaaacgta
     1081 tgatgaactt cctgttagca gagtatgaaa aacagataac cgtgaacaag tgaaagcccc
     1141 agcgatgggg cttttgcttg tgaggggttg aacaagcgaa aaccaacaca catagattgc
     1201 aggtgtaaaa ctcgcttgtt aactacacta aaccccaaag aagaaaactg attatttttt
     1261 atcctttttc acttcgtgcc tgatcaaaaa aacacctata ttttacttgt cagggatttt
     1321 gtcggaactt tgtcagaact ttgtcagaac tcaaatttta cgaaaaaccc ttataaatca
     1381 atagttaaag tcattttgtc agaatgtcgg actgtcagaa aaaaagttaa aaacgtgtcg
     1441 gagtttttct ttaaaaacct tgacaagtta aatttatgtt gtatatatat attataaaat
     1501 aaatttagag ggttttaata tgaaagacga aatagaagat ataaacgaat tagtagctaa
     1561 aagagattgg gaagatttca aaaaaacagg ttttggaaag ttttttacag caaatcaaat
     1621 gaaacaacaa gaattaactt atttaaacaa taaagcatta gatattgtaa acgaggaaga
     1681 tttatttgaa ataatgtcat taataccaca gccttttatt accagtgaaa atataaaaaa
     1741 ggctgatatt ttgagtgtta tatataataa tttcattgaa gaaacagaaa tacctttaac
     1801 acttccaatt ttttcatttt tcagcttttt aagtgcttat tgtgtaaaaa ataatattac
     1861 atattcaatg ccgttatctg aaaaaaaatc accagttaat acttgggtta cggttttggc
     1921 accgtctgga tcagcaaaaa cctattcact cggaaaaata gaagatttaa taccaattaa
     1981 accagatggc gaaaaagtta tagagcaaaa ttttgttaag ccttccggcc ctgcaaaatt
     2041 tattgaagag ttttcaaacc ttccagattc aagagatgga aaatctcaat atggtttttg
     2101 gattgaggac gaagtagctc aaatgttcaa acaggttgaa agagaaggaa ctccgctttc
     2161 agaaataaaa gaatatttct tgaaagccta tgacaataaa aaattaacaa gaaaaagcaa
     2221 aaaagagaca atagaaacta aaaatctaat attggtttta tttttcataa acacttttga
     2281 tagttatgtg aataatatat cttccgagtc tatgaccgat ggtttaatga gaagatttaa
     2341 tcttgtttat acagaaaaag ataagagccg agattttacc gatttcccta tatacaacga
     2401 gaaaaaaatc acagacgaaa ttttgtctga tagatttgaa gatttatttt tcaatatcaa
     2461 tccagatgta aattatacat tttcagaaaa tgcttttgaa ctttacagaa aatatttcaa
     2521 gatcttttgg catagaaaat ataaaaatat tctcacagat aaagaaaatt tttatagaac
     2581 atatatgatg caaagctgga aatttgctgt attctaccat ttaattttga aaaaagaagg
     2641 aaccgtgatc gatggcgaat gcttaatata tggaatgaaa atttctttgt tatttgctaa
     2701 tagcatgaaa aaattctttg attttaaaaa taaaaatata tcagattcta aaagagaaaa
     2761 acaaaaagat actttattaa aatatgcaga ttttctcaat tcaaaaccag atgcgacagt
     2821 tagagatttt tgtagaaaat ttagcattaa aaaagctgat gcggtttcaa ttttgaaaag
     2881 tttggaatgc tctggaatag aacattcaat atttgaagtt gtgagcaaat aacttgccga
     2941 tttaacaagg tgctatattt aactttcttt cggcaagttc aacccttcaa aaataataaa
     3001 gcccttcggg gcttttttat tttctcagcg tttccaaaaa aataatgatt atttattaat
     3061 cagctattga ctttattttt taatattata ttaagaatat aagggtaaaa ctataataca
     3121 gcaagctcat acaatactac gtattgtagc ttgtgagggg ttcccccttc aatccccttt
     3181 aaaacccaaa gactaacacc aaaacccagc acaggaggct aagaatgagc tacagagaca
     3241 gataccagcg taagcacagc ataacccttt gccttaacga tgacgagtta aagcaagttg
     3301 aggaactcgc tttaaattta caaaaaccaa aagcaacagc aatcagagaa ttaattttaa
     3361 ataaacaatc tacattgaaa aaatcaatta atagaaatat aaattccgat gttgtttatc
     3421 agctaaataa aattggtgta aatataaatc aaatatcaag agcaataaat actgatattg
     3481 ataaatttat atctcacgat ttcgcagaag attttttaaa tgtttttgaa gaaataataa
     3541 cagaaattga attaattaaa tctaaaatat gaggtgttga atgtatcata aaataatcgg
     3601 aggaaagaaa aagaaaagac aaaaaaacat attgaaaagt gttgagtatt tattaagaga
     3661 gaaaaaacca gaagaacaaa aaaacgttaa aatactttca ggttcaaaat cagatatagt
     3721 taattttaat aattattcta tcaataaaga taaatccaat ccgtatgttt gtggtgtatt
     3781 aagttttgaa gaagaaacaa taccagaaga gttaaaagca aaaataatca cagagtttga
     3841 agatttatta ttttcagggg tagatccaga aaatcgcccg ccgattttat gggtagagca
     3901 taatgataaa aacagggttg aattaaatta tttaacattt aa
//
