LOCUS       CP137449                2928 bp    DNA     circular BCT 08-NOV-2023
DEFINITION  Klebsiella pneumoniae strain 2022JQ-00762 plasmid unnamed4, complete
            sequence.
ACCESSION   CP137449
VERSION     CP137449.1
DBLINK      BioProject: PRJNA288601
            BioSample: SAMN33193817
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2928)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Pathogen: clinical or host-associated sample
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2928)
  CONSRTM   Clinical and Environmental Microbiology Branch: Whole genome
            sequencing antimicrobial resistance pathogens in the healthcare
            setting
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JUN-2023) Division of Healthcare Quality Promotion, US
            Centers for Disease Control and Prevention, 1600 Clifton Rd,
            Atlanta, GA, USA
REFERENCE   3  (bases 1 to 2928)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-OCT-2023) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease submission group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 20.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 10/25/2023 12:38:04
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,506
            CDSs (total)                      :: 5,385
            Genes (coding)                    :: 5,254
            CDSs (with protein)               :: 5,254
            Genes (RNA)                       :: 121
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 51 of 131
            Pseudo Genes (incomplete)         :: 88 of 131
            Pseudo Genes (internal stop)      :: 11 of 131
            Pseudo Genes (multiple problems)  :: 15 of 131
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2928
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="2022JQ-00762"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed4"
                     /geo_loc_name="USA"
                     /collection_date="2022"
     gene            complement(join(2511..2928,1..38))
                     /locus_tag="PZF77_27520"
     CDS             complement(join(2511..2928,1..38))
                     /locus_tag="PZF77_27520"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WPA06326.1"
                     /translation="MINLDGLKIEEIKKILAENNIEIIDGNSDPEEIEIKNKYDDEKNF
                     SIYIKADAEHNSLRIYGMSPFLISRRKNNLSDNEKIEVVNMMNIGSSVIKYSVIANSTL
                     SFEYGIPLSGQISNEHLLHVIDFVLNEVAVLGGIFDQFLKIVRKLKK"
                     /name="hypothetical protein"
     gene            complement(369..482)
                     /locus_tag="PZF77_27525"
     CDS             complement(369..482)
                     /locus_tag="PZF77_27525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WPA06327.1"
                     /translation="MHEPPVQSDCCACSGNFQLESNPEKHDKTPLAAANGN"
                     /name="replication initiation protein"
     gene            complement(2018..2503)
                     /locus_tag="PZF77_27530"
     CDS             complement(2018..2503)
                     /locus_tag="PZF77_27530"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WPA06325.1"
                     /translation="MNPKSLKEIIDTTSGMLTGVLSTMLLYLFKSSDSLGQFKESIPFF
                     VGLLVLLLSLLLIALNKSKIDKKKDQKTIEYKKEIKEKIETCSKIIKEEKDDSVYRKVA
                     EENLASLLKKDMQLLDEIEMERAALNRDSEESDLIISSYMEKIKSTVAKQSKGKQNT"
                     /name="hypothetical protein"
     Typing          844..1057
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="85.455"
                     /coverage="100.0"
                     /evalue="1.24e-55"
     Typing          complement(374..877)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.745"
                     /coverage="96.0"
                     /evalue="0.0"
ORIGIN
        1 tttatttctt ctatttttaa accatctaag ttgatcattt tttgttcctg ccatttactt
       61 tcattcatat tcacattttt tccgagatga aacaatcgta ggggcggttc tagatggttg
      121 cttgattaat tagtgctctg ctctgtaatt taaaggatct tcttgtgatc ctgtagctat
      181 agtcgtaatc ttttgtcctg aaaacaaaaa aaccgcctgg ggaggcggtt tttcgaaggt
      241 taagtcagtt ggggaactgc ttaacctggt aactggcttg gcggagcgca gatacctgat
      301 actgtccttt cagtgtagcc gcagtaaggg cgtcacttca agactctcaa tatctaaatc
      361 caccatgttc agttaccgtt ggctgctgcc agtggcgttt tgtcgtgctt ttccgggttg
      421 gactcaagtt gaaagttacc ggaacaggcg cagcagtcgg actgaacggg gggttcgtgc
      481 atacagtcca gcttggagcg aactgcctac ccggaaccga gtgtcaggcg tggaatgaga
      541 aaccgcggcc ataacagcgg aatgacaccg gtaaaccgaa aggcaggaac aggagagcgc
      601 acgagggagc cgccaggggg aaacgcctgg tatctttaca gtcctgtcgg gtttcgccac
      661 cactgatttg agcgtcagat tctgtgatgc ttgtcagggg ggcggagcct atggaaaaac
      721 ggcttcgccg cggccttctc atttccctgt taagttcctt cctggcattt accaggaaac
      781 ttccacccaa ttcgcaagtc cgcaccgctc gccgcagccg aacgaccgag cgcagcgagt
      841 cagtgagcga ggaagcggaa tatctcctgt attgcatctt ctgctgacgc gccggtgcca
      901 cctttttctc ctgccatatg aagcactttc ataaagtatt actccgccgt aacatattga
      961 gccagtatac actccgctag cgctacgtga ctggttcagg gctgcgcccc gaaacccgct
     1021 aacacccctc agctactgga tatcacaaca tgccatctga gtatgatgaa caacgggatg
     1081 cgactgatgc tctgcttccc ggcgaatatg acctttttga tttaatggcg caggttactg
     1141 aagagaacct gcacgccccg gtggattctg gcccgcctgt cggcagggaa acgttataac
     1201 ttttttcgct ggtcagcgta cgtgtaatac gtaggtatta cattttattt ctttattttc
     1261 atgtgattac aggtggttgt aatacgttgc gtattacata aataaacggg gacttcagtt
     1321 tttacctttt aattcatgca gttgcgatga aaatcgcggc tgcgttaggt gtatgaccat
     1381 ttaagggaca aaaaattatc attctggctg ggtgatctgc gcaggttaag gggcatcggt
     1441 aaccaaaaag cgtcctaacg acctcgttca tgccagcatg aacggattat ttttccggac
     1501 tacaggtaaa ctacaaagcg gaagtgaaac tactacagca ttactactga attactacaa
     1561 atcggaggag gatgactact tatctactac tgatttacta ctgaattact actgaattac
     1621 gtcagaacag ttctctgaac cattcgtaca tccgaccccc ttatcttcat gcttgatgct
     1681 cttgccaacg cttcacggtc acgcaataaa ttgcgttccc gttcaccgtt ttcggatgag
     1741 aagaacgtcg aaaacaggac ttccactggc tgcacggagt gaaattctgc gctatgcact
     1801 tgcgcgcata ctcatgcatg ccgtaaaaac agagcctgcg cgtttctggc gggttttcgg
     1861 gtggtttgtt gcctgtttta ccggtttccc gtcagaaacg ccctcagagg ctctgaggcg
     1921 gtgcacgcaa cggatgttat ggtaaatcag tgcatttttt aattagccta aagtacatca
     1981 atctacgcac ttctattgat gatgactatt tcattcatca tgtgttttgc tttcctttgc
     2041 tttgttttgc tactgttgat tttatttttt ccatgtatga tgaaattatt aaatccgact
     2101 cttctgaatc gcgattaagc gcagctcttt ccatttctat ttcatcgagt agttgcatgt
     2161 cttttttcag taaagatgca aggttttctt cagctacttt tctatagacg gaatcatctt
     2221 tttcttcttt tattattttg gagcaagttt ctattttttc tttaatctct tttttgtatt
     2281 caatggtttt ttgatctttc tttttatcta ttttactttt atttaaagcg atcagtagaa
     2341 ggctaagtaa aagcactagc aaccctacaa aaaaaggaat cgactctttg aattggccta
     2401 gtgaatctga gcttttaaaa agataaagaa gcattgtaga caacaccccg gtcaacatcc
     2461 ctgatgttgt atcaattatc tcttttaaac ttttagggtt catttttgac tcacttcttt
     2521 aattttcgta ctattttgag gaactgatca aaaatacctc ccagcactgc cacctcatta
     2581 agcacaaagt caatcacatg cagtaaatgt tcattggata tctgtccaga gaggggaatt
     2641 ccatattcaa agcttaaggt agaatttgct ataactgaat atttaatgac gctgctacct
     2701 atattcatca tgtttacaac ctctattttt tcattgtcac tgaggttgtt ttttctgcgc
     2761 gaaattaaaa aaggtgacat tccatatatg cgtagtgaat tatgttcggc gtcggcctta
     2821 atatatatag agaaattttt ctcatcgtca tatttgtttt ttatttcaat ttcttcgggg
     2881 tctgaatttc catcgataat ttcgatgttg ttttctgcta atattttt
//
