LOCUS       CP128420                2495 bp    DNA     circular BCT 30-JUN-2023
DEFINITION  Enterobacter hormaechei subsp. xiangfangensis strain 090095 plasmid
            p1_090095, complete sequence.
ACCESSION   CP128420
VERSION     CP128420.1
DBLINK      BioProject: PRJNA415108
            BioSample: SAMN19314267
KEYWORDS    .
SOURCE      Enterobacter hormaechei subsp. xiangfangensis (Enterobacter
            xiangfangensis)
  ORGANISM  Enterobacter hormaechei subsp. xiangfangensis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2495)
  AUTHORS   Wei,L., Feng,Y. and Zong,Z.
  TITLE     The complete genome of Enterobacter xiangfangensis strain 090095
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2495)
  AUTHORS   Wei,L., Wang,C., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAY-2021) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
REFERENCE   3  (bases 1 to 2495)
  AUTHORS   Wei,L., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JUN-2023) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: trycycler v. 0.5.3
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 150.0x
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 06/21/2023 13:04:53
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,391
            CDSs (total)                      :: 5,275
            Genes (coding)                    :: 5,151
            CDSs (with protein)               :: 5,151
            Genes (RNA)                       :: 116
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 44 of 124
            Pseudo Genes (incomplete)         :: 83 of 124
            Pseudo Genes (internal stop)      :: 20 of 124
            Pseudo Genes (multiple problems)  :: 20 of 124
            Pseudo Genes (short protein)      :: 1 of 124
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Enterobacter hormaechei subsp. xiangfangensis"
                     /mol_type="genomic DNA"
                     /strain="090095"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /sub_species="xiangfangensis"
                     /db_xref="taxon:1296536"
                     /plasmid="p1_090095"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2018-07"
     gene            complement(221..439)
                     /locus_tag="KK091_026945"
     CDS             complement(221..439)
                     /locus_tag="KK091_026945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WJR74807.1"
                     /translation="MFGFSSGALMTLSDDERHLLVSVVSVWLRRAGGDAGAMMLDAYRQ
                     ILSETEPAVRTVMLEFLESVRIHYISS"
                     /name="hypothetical protein"
     gene            1647..1874
                     /locus_tag="KK091_026950"
     CDS             1647..1874
                     /locus_tag="KK091_026950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_component:
                     GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WJR74805.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     gene            2240..2425
                     /locus_tag="KK091_026955"
     CDS             2240..2425
                     /locus_tag="KK091_026955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WJR74806.1"
                     /translation="MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEENA"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          704..1232
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.598"
                     /coverage="88.0"
                     /evalue="0.0"
ORIGIN
        1 gaccagggta tttgtgatgc cggcgcgtgc gcggtattac aaatgcacat cctgtcccgg
       61 aacggacacc gggaaacagc aaaaaaaacc gggcggcacg cccggaactc aatcaagtta
      121 gattagatta ctctcactcg tccataacag catcatggaa cgacgaccac cgtccgtgac
      181 ggccgcctcg tttaagtatg gacagaaata cagaaaatgc tcaggacgaa atgtaatgaa
      241 tgcgaacgga ttcaagaaat tcgagcatga cagtccttac ggccggttcg gtttcagaca
      301 aaatctgccg gtatgcatcc agcatcatgg ctccggcatc ccctccggca cgccgtagcc
      361 agaccgaaac aacggacaca agcaggtgtc gctcatcatc actaagagtc atcagggctc
      421 cggaagaaaa accaaacatg gcttacctac tgttaacggc aacgcagaag aaaggtttac
      481 agggtagcgg gcagggatga aaaaaaaaaa attgcagtca ggccggaacg gctgctgaac
      541 cggtacaggc gggttccggg cgcagcgccg gaccagtcac ggagcactag cggagtgtat
      601 actggcttaa gatgtagcat ggcagtaaca catagcatta atgccacata agacaggcgc
      661 agaaagtgaa agaaaacgcg tcaggagaaa atgtgataca gaatatattc cgcttcctcg
      721 ctcactgact cgctccgctc ggtcgttcgg ctgcggcgag cgggacgggc ttacggatgg
      781 atcagaaatt tcctggggga tgccaggaag atacttaacg aagaaagcat aaggccgcgc
      841 caaagccgtt tttccatagg ctccgccccc ctgacaagca tcacagaatc tgacgctcaa
      901 atcagtggtg gcgaaacccg atgcggctta aagataccag gcgtttcccc ctggtggctc
      961 cctcgtgctc ccccgcattc ctgcctttcg gtttaccggt gtcactccgc tgttatggcc
     1021 gcggtttctc attccacgcc tgacactcag ttccgggaag gcagttcgct ccaggatgga
     1081 ctgtatgcac gaaccccccg ttcagtccga ccgctgcgcc ttatccggta actatcaact
     1141 tgagtccaac ccggaaagac acgactaatc gccattggca acggccattg gcaaacagga
     1201 tgtgcgagag atgtctcaag agttcttgaa gtggcggcct tagtgaggct acactgaaag
     1261 gacaaatttg gtgacatgtc tcgcacaaga ctgttaccac ggttagggga tctgccagga
     1321 ttacctaacc ttcgaaaaac cacctgccag ggtggttttt tcgtttacag ggcaagagat
     1381 tacgcgcgga aaaaaaggat ctcaagaaga tcctttataa attagacatc caacctcaca
     1441 aagaggaata cttaaatcat cttggtatat gtatcggccg gattacatct catataagcc
     1501 tcctccccgc ctgacaccac actttgacca tagcacctcg cgcctaactc gatatacagc
     1561 ccaccatcaa gcctcttttc acataaaaaa tgacctatag ttagatggtt agtgaccaaa
     1621 actgatatgg ataaaaggag ctggctttga aaaagatttt tgtttcagtg ttcgcagcgg
     1681 cagttgcgct ttcagccctc accggctgca cgcgcacaag ctatgccata cacaccaatg
     1741 acggtcgcac tattgtcagc gacggcaaac ctaaagaatc agactcaggc ctgcttggct
     1801 atacagacgc gaatggtgtc aaacagcaga tcaataaaac cgacgttaaa gaagtctccg
     1861 aaattccgca ctgagcatct tctccgaaaa aggccgctaa tgtggccttt ttctttacct
     1921 gtggttctcc gccaaaatcc cagcaaattg catcaccaaa gctaaaagct ttcagggttg
     1981 tctaaaaagc acaagacata agaggaagtg cggtatttta taatcaagcc cccaagaatt
     2041 taccataaca tccgttgccc gcaccgcctg agacgcgttc agcgcgttcc tgacgaaacc
     2101 atgacaaaaa ccacaacaaa ccaccccgga acccgtcaga aacgcgcctg ttaaatttta
     2161 acggcatgca tgactatgca ccagaatgac gccatgctct tttcacgcaa aaatcatcac
     2221 cagacgggga aaatcaccag tgaccagaca ggaatccgcc gccctcaata tggccaaatt
     2281 tatccgcgca cagacacttc tcctccttga gcggctcgag cagatggatc tggatgaggc
     2341 tgccggctgc tgtgagcacc tgcacgatca ggccgaagcg ctttacgcca tgctgaacgc
     2401 acagataggc gaggaaaatg cgtgaaaatc ggtgaacggg tgcgcaattc agtgcgcggc
     2461 cgtgaggcga tggcggggtg tcggggcgca gccct
//
