LOCUS       CP125158                7010 bp    DNA     circular BCT 23-MAR-2024
DEFINITION  Klebsiella pneumoniae strain 176 plasmid unnamed4, complete
            sequence.
ACCESSION   CP125158
VERSION     CP125158.1
DBLINK      BioProject: PRJNA945360
            BioSample: SAMN33790397
KEYWORDS    .
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 7010)
  AUTHORS   Konanov,D.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAR-2023) Laboratory of Mathematical Biology and
            Bioinformatics, Research Institute for Systems Biology and Medicine,
            Nauchniy Proezd, Moscow 117246, Russia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.8.1-b1676
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 80x
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/09/2023 19:08:37
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,771
            CDSs (total)                      :: 5,646
            Genes (coding)                    :: 4,657
            CDSs (with protein)               :: 4,657
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 989
            CDSs (without protein)            :: 989
            Pseudo Genes (ambiguous residues) :: 0 of 989
            Pseudo Genes (frameshifted)       :: 897 of 989
            Pseudo Genes (incomplete)         :: 98 of 989
            Pseudo Genes (internal stop)      :: 22 of 989
            Pseudo Genes (multiple problems)  :: 26 of 989
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..7010
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="176"
                     /db_xref="taxon:573"
                     /plasmid="unnamed4"
                     /geo_loc_name="Russia"
                     /collection_date="2022"
     gene            381..878
                     /locus_tag="P4G33_28825"
     CDS             381..878
                     /locus_tag="P4G33_28825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020325392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WXJ02394.1"
                     /translation="MSSLLTASRDFEEKSKAQQQLTEERLKAAFSKHENVVKSELNASA
                     KRINDAISAHEQGMNAAMQSNRLSVLRMVGRTWLTITMVSGLLFASLSGVLWYQGNRIA
                     ANLAEIRQQRDTLSKLHMQTWGVTYLENRNGRFLVLPEGMKAETGRTVDNKTRNAVKLV
                     RE"
                     /name="MbeB family mobilization protein"
     gene            885..1100
                     /locus_tag="P4G33_28830"
     CDS             885..1100
                     /locus_tag="P4G33_28830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015328239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WXJ02395.1"
                     /translation="MTELEKQLLSALEQLQQDYSRRLDEWESAFEEWRKMSGLMQRENA
                     ALSERVSGLSRQVQSLSEQLRRLSTG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            2870..3211
                     /locus_tag="P4G33_28835"
     CDS             2870..3211
                     /locus_tag="P4G33_28835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WXJ02396.1"
                     /translation="MADKRNKMLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPTR
                     AGRLPSISPALLRQLAGMGNNLNQIARKVNAGGAGHDRVQIVAALMAIDAGLERLRHAV
                     LEKGPDDDC"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            3420..3848
                     /locus_tag="P4G33_28840"
                     /pseudo=""
     CDS             3420..3848
                     /locus_tag="P4G33_28840"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            3889..4386
                     /locus_tag="P4G33_28845"
     CDS             3889..4386
                     /locus_tag="P4G33_28845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020325392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WXJ02392.1"
                     /translation="MSSLLTASRDFEEKSKAQQQLTEERLKAAFSKHENVVKSELNASA
                     KRINDAISAHEQGMNAAMQSNRLSVLRMVGRTWLTITMVSGLLFASLSGVLWYQGNRIA
                     ANLAEIRQQRDTLSKLHMQTWGVTYLENRNGRFLVLPEGMKAETGRTVDNKTRNAVKLV
                     RE"
                     /name="MbeB family mobilization protein"
     gene            4393..4608
                     /locus_tag="P4G33_28850"
     CDS             4393..4608
                     /locus_tag="P4G33_28850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015328239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WXJ02393.1"
                     /translation="MTELEKQLLSALEQLQQDYSRRLDEWESAFEEWRKMSGLMQRENA
                     ALSERVSGLSRQVQSLSEQLRRLSTG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            6378..6719
                     /locus_tag="P4G33_28855"
     CDS             6378..6719
                     /locus_tag="P4G33_28855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WXJ02397.1"
                     /translation="MADKRNKMLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPTR
                     AGRLPSISPALLRQLAGMGNNLNQIARKVNAGGAGHDRVQIVAALMAIDAGLERLRHAV
                     LEKGPDDDC"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          2612..2785
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          6120..6293
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          complement(2126..2645)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.308"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(5634..6153)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.308"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          3..1216
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          3202..4724
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          6400..6713
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.453"
                     /coverage="99.0"
                     /evalue="1.0500000000000001e-58"
     Typing          6710..7008
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.0"
                     /coverage="90.0"
                     /evalue="1.75e-58"
ORIGIN
        1 tgagctgaat tttctgatcc ccaataccga attactgacg gggaaacgcc tccagccgta
       61 ttacgatcgt gccgaccggc cgcgcatcga tgcgtggcag acagtggtca acggcaggct
      121 ggggctacat gatccgaacg acccggagaa ccggcgggcg ctggtcacgc cttcaggact
      181 gccagaaacg aagcaggaag ccgcagagac gattacacgg ggtttgctga tgttagcctc
      241 atcaggagag ctgaaaacgc gtgatgacgt cacaggggcg ctcacagcgg ccggttttga
      301 ggtggtcaga accacaaaaa acagtatcag cattgccgac ccggacgggg ggcgaaatat
      361 ccgactgagg ggagccattt atgagcagtc ttttaacggc ctcgagggac ttcgaggaga
      421 aatcgaaagc acagcagcag cttaccgaag agaggctgaa agccgcattc agcaagcacg
      481 agaacgttgt caaatcggaa ctgaacgcaa gcgcgaagag aatcaacgac gccatcagcg
      541 cccacgaaca ggggatgaac gcggcgatgc agtcgaaccg gctgagcgtg ctgcgaatgg
      601 tcgggcggac gtggctgacc atcaccatgg tgtcagggct gctgttcgcc agcctgagcg
      661 gggtgctgtg gtaccagggg aaccggatag cggcgaacct ggcggaaatc aggcagcaga
      721 gagatacgct gtcgaaactg cacatgcaga cgtggggcgt gacctatctg gagaaccgca
      781 acggacggtt tctggtgctg ccggagggga tgaaagccga aacgggccgg acggtggaca
      841 acaagacgcg gaacgcggtg aagctggtac gggagtagag cagaatgacg gaactggaaa
      901 aacaattgct gagcgcgtta gagcagctac agcaggacta ctcgagaagg ctggacgagt
      961 gggagagcgc cttcgaggaa tggcggaaga tgtctggtct tatgcaacgg gagaacgcgg
     1021 cgctgagcga gcgcgtgtcg ggcttgagca ggcaggtgca gagtttgagc gagcagctgc
     1081 gccggttatc gacaggctga atgagattga gcaacagcga tacgggcaaa caacggaaaa
     1141 ggaaccagag aagacagcag atctggtacc ggaacggcaa cgcacattat ctcatggtga
     1201 cagggagtat ggagactgat aaacgcccgt ctcaggtggc ctgagcgtga cggggatcat
     1261 ggccattttc tgcgatttca gcacacagag agtctttttt aaccgaaatc accggctatg
     1321 cagtgatgtg aataagtgat gcatatgcgt aaaataaatc aggtgcgttt ctggtggttt
     1381 tcggtgtact tgccaccacc ttttgcccgt cagccatcag aaacgccctg agtgcctccg
     1441 gcgcggtgcg ggtaagagat gttatgttta atgttgataa caggagtaag agtgatgctt
     1501 acatttattg gtgtagtggt agtcgccgtt attgcattta aattatttat gcttttttta
     1561 gttcatccga atctgccgtc gaacgtgcta cccgtaaata tatggagaac cctacgagtg
     1621 ctaactataa aataatggtg gctacacgca tgagaaatga gaagaaaaga gggtgatata
     1681 tgtttgagtt tattggtttt ttatttttac ttttggtgtg ttatgtcttt atacaaatgg
     1741 ttgctgtcag ggtgtttcct gaatatggag tacggaaagc ggaggaacga taccgtcgaa
     1801 atccatcagc agaaaatgag gatctgttat ggagagctag aagtcgtata actaaacgca
     1861 agtaatgttt cctaagtgtg ttgataggca aacatggtgg gagttactac tctcggagtt
     1921 aatgatcttc ttgtgatcct gtcgtttcag tcgtaatctc ttgctctgaa aacgaaaaaa
     1981 ccacctgggg aggtggtttg atcgaaggtt aagtctgttg gggaactgct taaccaggta
     2041 actgggtata cgagaccgca gataccaaaa ctgttctttc agtgtagccg cagtcaggcc
     2101 catacttcaa gacctctgaa tctctctctc gtatatccca gttaccagtg gctgctgcca
     2161 gtggcgcttt gtcgtgcttt ctcgggttgg actcaagatg atagttaccg ggtaaggcgc
     2221 agcagtcgga ctgaacgggg ggtttgtgca tacagtccag cttggagcga actgcctacc
     2281 cggaactgag tgtcaggcgt ggaatgagat aaacgcggcc ataacagcgg aatgacaccg
     2341 gtaaaccgaa aggcaggaac aggagagcgc acgagggagc cgccagggga aacgcctggt
     2401 atctttatag tcctgtcggg tttcgccacc actgatttga gcgtcagatt tcgtgatgct
     2461 tgtcaggggg cggagcctat ggaaaaacgg cttcgccgcg gccctatcgc ttccctgtta
     2521 agtatcttcc tggcatcttc caggaaatct ccgccccgtt cgtaagccat ttccgctcgc
     2581 cgcagtcgaa cgaccgagcg tagcgagtca gtgagcgagg aagcggaata tatcctgtat
     2641 cacatattct gctgacgcgc cggtgccgcc ttttttctcc tgccacatga agcacttcac
     2701 tgacatcctc atccgtgcca acatagtaag ccagtataca ctccgctagc gctacgtgac
     2761 tggttcaggg ctgcgccccg aaaccccact gacgcgcctg cggcttgtcc aaccccgcgc
     2821 cgaccgggaa aggctttccc gtccgtcacg gcgttatcag gaggcgattc tggcagataa
     2881 acgcaacaag atgctcacga tgtgggtgac ggaagacgaa caccggcggt tgcttgagcg
     2941 gtgcgacgga aaacaactgg cggcgtggat gcgccagacc tgccttgatg agaaaccgac
     3001 acgcgccggc aggcttccct cgatttcgcc cgcgctgctg cgtcagcttg ccggcatggg
     3061 caataacctg aaccagatcg cccggaaagt gaacgccggt ggtgccggtc atgaccgggt
     3121 gcagatcgtg gcagcgctga tggcgatcga tgccggtctg gaacggttgc ggcatgccgt
     3181 actggaaaaa gggccggacg atgattgtta aattccatcc ccggggtcgc ggcgggggcg
     3241 ccggtcctgt ggattatctt ctgggtaaag accggcagcg tgaaggtgcc agcgtcctgc
     3301 aggggaagcc ggaagaagtc cgggagctga ttgatgcgtc gccgtatgtg aaaaaatata
     3361 cctccggggt gctgtcattc gcggaggcgg acctgccgcc gggtcagcgt gaaaaactga
     3421 tggccagctt tgagcgggtt ctgatgcccg gactcgataa agaccagtac agcattctgt
     3481 gggtggaaca cgcagacaag ggtcgtcttg agctgaattt tctgatcccc aataccgaat
     3541 tactgacggg gaaacgcctc cagccgtatt acgatcgtgc cgaccggccg cgcatcgatg
     3601 cgtggcagac agtggtcaac ggcaggctgg ggctacatga tccgaacgac ccggagaacc
     3661 ggcgggcgct ggtcacgcct tcaggactgc cagaaacgaa gcaggaagcc gcagagacga
     3721 ttacacgggg tttgctgatg ttagcctcat caggagagct gaaaacgcgt gatgacgtca
     3781 caggggcgct cacagcggcc ggttttgagg tggtcagaac cacaaaaaac agtatcagca
     3841 ttgccgaccc ggacgggggg cgaaatatcc gactgagggg agccatttat gagcagtctt
     3901 ttaacggcct cgagggactt cgaggagaaa tcgaaagcac agcagcagct taccgaagag
     3961 aggctgaaag ccgcattcag caagcacgag aacgttgtca aatcggaact gaacgcaagc
     4021 gcgaagagaa tcaacgacgc catcagcgcc cacgaacagg ggatgaacgc ggcgatgcag
     4081 tcgaaccggc tgagcgtgct gcgaatggtc gggcggacgt ggctgaccat caccatggtg
     4141 tcagggctgc tgttcgccag cctgagcggg gtgctgtggt accaggggaa ccggatagcg
     4201 gcgaacctgg cggaaatcag gcagcagaga gatacgctgt cgaaactgca catgcagacg
     4261 tggggcgtga cctatctgga gaaccgcaac ggacggtttc tggtgctgcc ggaggggatg
     4321 aaagccgaaa cgggccggac ggtggacaac aagacgcgga acgcggtgaa gctggtacgg
     4381 gagtagagca gaatgacgga actggaaaaa caattgctga gcgcgttaga gcagctacag
     4441 caggactact cgagaaggct ggacgagtgg gagagcgcct tcgaggaatg gcggaagatg
     4501 tctggtctta tgcaacggga gaacgcggcg ctgagcgagc gcgtgtcggg cttgagcagg
     4561 caggtgcaga gtttgagcga gcagctgcgc cggttatcga caggctgaat gagattgagc
     4621 aacagcgata cgggcaaaca acggaaaagg aaccagagaa gacagcagat ctggtaccgg
     4681 aacggcaacg cacattatct catggtgaca gggagtatgg agactgataa acgcccgtct
     4741 caggtggcct gagcgtgacg gggatcatgg ccattttctg cgatttcagc acacagagag
     4801 tcttttttaa ccgaaatcac cggctatgca gtgatgtgaa taagtgatgc atatgcgtaa
     4861 aataaatcag gtgcgtttct ggtggttttc ggtgtacttg ccaccacctt ttgcccgtca
     4921 gccatcagaa acgccctgag tgcctccggc gcggtgcggg taagagatgt tatgtttaat
     4981 gttgataaca ggagtaagag tgatgcttac atttattggt gtagtggtag tcgccgttat
     5041 tgcatttaaa ttatttatgc tttttttagt tcatccgaat ctgccgtcga acgtgctacc
     5101 cgtaaatata tggagaaccc tacgagtgct aactataaaa taatggtggc tacacgcatg
     5161 agaaatgaga agaaaagagg gtgatatatg tttgagttta ttggtttttt atttttactt
     5221 ttggtgtgtt atgtctttat acaaatggtt gctgtcaggg tgtttcctga atatggagta
     5281 cggaaagcgg aggaacgata ccgtcgaaat ccatcagcag aaaatgagga tctgttatgg
     5341 agagctagaa gtcgtataac taaacgcaag taatgtttcc taagtgtgtt gataggcaaa
     5401 catggtggga gttactactc tcggagttaa tgatcttctt gtgatcctgt cgtttcagtc
     5461 gtaatctctt gctctgaaaa cgaaaaaacc acctggggag gtggtttgat cgaaggttaa
     5521 gtctgttggg gaactgctta accaggtaac tgggtatacg agaccgcaga taccaaaact
     5581 gttctttcag tgtagccgca gtcaggccca tacttcaaga cctctgaatc tctctctcgt
     5641 atatcccagt taccagtggc tgctgccagt ggcgctttgt cgtgctttct cgggttggac
     5701 tcaagatgat agttaccggg taaggcgcag cagtcggact gaacgggggg tttgtgcata
     5761 cagtccagct tggagcgaac tgcctacccg gaactgagtg tcaggcgtgg aatgagataa
     5821 acgcggccat aacagcggaa tgacaccggt aaaccgaaag gcaggaacag gagagcgcac
     5881 gagggagccg ccaggggaaa cgcctggtat ctttatagtc ctgtcgggtt tcgccaccac
     5941 tgatttgagc gtcagatttc gtgatgcttg tcagggggcg gagcctatgg aaaaacggct
     6001 tcgccgcggc cctatcgctt ccctgttaag tatcttcctg gcatcttcca ggaaatctcc
     6061 gccccgttcg taagccattt ccgctcgccg cagtcgaacg accgagcgta gcgagtcagt
     6121 gagcgaggaa gcggaatata tcctgtatca catattctgc tgacgcgccg gtgccgcctt
     6181 ttttctcctg ccacatgaag cacttcactg acatcctcat ccgtgccaac atagtaagcc
     6241 agtatacact ccgctagcgc tacgtgactg gttcagggct gcgccccgaa accccactga
     6301 cgcgcctgcg gcttgtccaa ccccgcgccg accgggaaag gctttcccgt ccgtcacggc
     6361 gttatcagga ggcgattctg gcagataaac gcaacaagat gctcacgatg tgggtgacgg
     6421 aagacgaaca ccggcggttg cttgagcggt gcgacggaaa acaactggcg gcgtggatgc
     6481 gccagacctg ccttgatgag aaaccgacac gcgccggcag gcttccctcg atttcgcccg
     6541 cgctgctgcg tcagcttgcc ggcatgggca ataacctgaa ccagatcgcc cggaaagtga
     6601 acgccggtgg tgccggtcat gaccgggtgc agatcgtggc agcgctgatg gcgatcgatg
     6661 ccggtctgga acggttgcgg catgccgtac tggaaaaagg gccggacgat gattgttaaa
     6721 ttccatcccc ggggtcgcgg cgggggcgcc ggtcctgtgg attatcttct gggtaaagac
     6781 cggcagcgtg aaggtgccag cgtcctgcag gggaagccgg aagaagtccg ggagctgatt
     6841 gatgcgtcgc cgtatgtgaa aaaatatacc tccggggtgc tgtcattcgc ggaggcggac
     6901 ctgccgccgg gtcagcgtga aaaactgatg gccagctttg agcgggttct gatgcccgga
     6961 ctcgataaag accagtacag cattctgtgg gtggaacacg cagacaaggg
//
