LOCUS       CP124766                1865 bp    DNA     linear   BCT 11-MAY-2023
DEFINITION  Klebsiella michiganensis strain 2022CK-00495 plasmid unnamed14.
ACCESSION   CP124766
VERSION     CP124766.1
DBLINK      BioProject: PRJNA288601
            BioSample: SAMN31152636
KEYWORDS    .
SOURCE      Klebsiella michiganensis
  ORGANISM  Klebsiella michiganensis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1865)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     2022CK-00495
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1865)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-APR-2023) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease submission group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.9.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 126.0x
            Sequencing Technology :: Oxford Nanopore GridION; Oxford Nanopore
            MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/01/2023 13:40:56
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7,393
            CDSs (total)                      :: 7,273
            Genes (coding)                    :: 7,098
            CDSs (with protein)               :: 7,098
            Genes (RNA)                       :: 120
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 175
            CDSs (without protein)            :: 175
            Pseudo Genes (ambiguous residues) :: 0 of 175
            Pseudo Genes (frameshifted)       :: 59 of 175
            Pseudo Genes (incomplete)         :: 121 of 175
            Pseudo Genes (internal stop)      :: 30 of 175
            Pseudo Genes (multiple problems)  :: 29 of 175
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1865
                     /organism="Klebsiella michiganensis"
                     /mol_type="genomic DNA"
                     /strain="2022CK-00495"
                     /isolation_source="Rectal Swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:1134687"
                     /plasmid="unnamed14"
                     /geo_loc_name="USA"
                     /collection_date="2022-02-25"
     gene            <1..389
                     /locus_tag="QJQ59_03145"
     CDS             <1..389
                     /locus_tag="QJQ59_03145"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WGZ97132.1"
                     /translation="EAAERGVGTGENQLPDMGQFKANVGSSGFSIFFPPNNVIQAGKVN
                     ITTKQSGADGVYENSLIVSLAYAYKGFHLVIPVAHDVGGEGQLENAWLGVSAETDSARF
                     QVYASCRTANTVIPVTWLAIGVAN"
                     /name="hypothetical protein"
     gene            389..802
                     /locus_tag="QJQ59_03150"
     CDS             389..802
                     /locus_tag="QJQ59_03150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001477732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="WGZ97133.1"
                     /translation="MTIFVSKTKPGFWVESNKPDDAREITDELWQSLLNENWTNGKEID
                     FSIYPPVSVVPPEPVYTKGDYIRMAESRRDSLRVKADSAIAPLKDAVDLSIATEAETSL
                     YNEWRKYRVLLNRVDTSTAPDINWPTEPEEQAS"
                     /name="tail fiber assembly protein"
     gene            complement(774..1373)
                     /locus_tag="QJQ59_03155"
     CDS             complement(774..1373)
                     /locus_tag="QJQ59_03155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016191668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="WGZ97134.1"
                     /translation="MDEAQLNHELIATIAGNITVFNFDGETREYLSSSVEYLAVGVGVP
                     ANSCVEAPGEARAGYAICRTQDLAAWEYISDHRGKTVYSIHFGTAIVLSDLGDYPADTT
                     LLAPGTPYDIWNGFEWVTDTDKKHLADIEAAEQQKAALTEDARATISLMQTELQLGVIS
                     NDDKASLINWLAYIRELQALDTNVAPDISWPVPPAR"
                     /name="tail fiber assembly protein"
     gene            complement(1373..>1865)
                     /locus_tag="QJQ59_03160"
     CDS             complement(1373..>1865)
                     /locus_tag="QJQ59_03160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="WGZ97135.1"
                     /translation="EGSALPVGVPIPWPSATLPTGWLKCNGATFTASQYPKLALAYPAL
                     RLPDLRGEFIRGWDDSRGIDNGRALLSSQGHSLRDHSHNQQVWTGSNTTSSSVGQSGNY
                     APLATGGDGGIAYTDREPQSLPSAVRAIGTRGVASDNAANIGIETRPRNIALNYIVRAA
                     "
                     /name="phage tail protein"
ORIGIN
        1 gagaagcggc tgaacggggt gtgggaaccg gtgaaaacca gttgcctgac atgggccagt
       61 ttaaggcgaa cgtaggtagc tcaggattta gtatattttt tccgcccaat aacgtcattc
      121 aggcgggaaa ggtaaatata accaccaagc aaagtggggc cgatggcgtt tatgaaaaca
      181 gcctcatagt cagcttggcc tatgcgtaca agggttttca cctcgtcatt ccggtagccc
      241 atgatgttgg cggtgaagga cagcttgaaa atgcatggct tggtgtgtca gcagaaacag
      301 acagcgcacg ctttcaggta tatgcatcat gccggactgc caataccgtt atccctgtaa
      361 cctggctggc aataggagtg gcaaactaat gacaatcttt gtatctaaaa ctaaaccggg
      421 attttgggtt gagtcgaaca agccagatga tgccagagaa atcactgatg agttatggca
      481 gtcacttctt aatgaaaact ggactaacgg caaagaaatt gatttttcga tttatccacc
      541 cgtttcggtg gtgccgccag aaccggtata caccaagggg gactatatca ggatggccga
      601 atcacgccgg gacagtctac gtgtcaaagc ggattcggca attgcgccgc taaaggatgc
      661 ggtggattta tcaatagcaa ccgaagcaga aacgtctttg tacaacgaat ggcgcaaata
      721 ccgggtactg ctaaatcgtg ttgatacttc aacagcccct gacattaact ggcctaccga
      781 gccggaggaa caggccagct gatatcaggg gcgacatttg tatccagcgc ctgcaactcc
      841 ctgatataag ccagccagtt aatcaggctg gctttatcat cattactgat gacaccaagc
      901 tgtaactcgg tctgcatgag actgatggtt gccctggcgt cttctgtcaa tgctgctttt
      961 tgttgctccg cggcttcaat atctgccaaa tgtttcttat cggtatccgt cacccattca
     1021 aaaccattcc agatatcgta tggtgtaccg ggggccagta gagtggtatc tgccggataa
     1081 tcgcccaggt cggaaagcac aatagccgtg ccgaagtgga tgctatatac cgttttcccc
     1141 cgatggtcag atatatactc ccacgcggct aaatcctgag ttcggcagat cgcgtacccc
     1201 gcgcgggctt cacccggtgc ttcaacacat gaatttgccg gaaccccaac accaaccgca
     1261 agatactcaa cagaagacga caagtattcg cgggtctcgc catcgaagtt gaagaccgtg
     1321 atattgcctg cgatggtcgc aatcaactca tggtttaact gtgcttcatc cattatgcag
     1381 ccctcacgat gtagtttaat gcgatgttgc gcgggcgggt ttcaatgcca atgttcgctg
     1441 cattgtcaga agcaacccca cgggtgccga tagctcttac tgctgatggt aggctttgag
     1501 gctccctgtc ggtataggca atccccccat cccctccagt cgctagcgga gcataattgc
     1561 cgctctgacc aacacttgac gatgttgtat ttgaacctgt ccatacctgt tgattatgtg
     1621 agtggtccct gagtgaatgg ccttgagatg aaagcagcgc acgtccgttg tcgataccac
     1681 gactatcatc ccatccgcgg ataaactcac ctcgcaaatc aggcaatctg agcgcaggat
     1741 acgccagagc cagtttgggg tactgggagg ctgtgaacgt tgctccgttg catttgagcc
     1801 accccgttgg tagcgttgct gatggccacg gaatggggac gccaactggc aaagcagagc
     1861 cttcc
//
