LOCUS       CP124764                1865 bp    DNA     linear   BCT 11-MAY-2023
DEFINITION  Klebsiella michiganensis strain 2022CK-00495 plasmid unnamed15.
ACCESSION   CP124764
VERSION     CP124764.1
DBLINK      BioProject: PRJNA288601
            BioSample: SAMN31152636
KEYWORDS    .
SOURCE      Klebsiella michiganensis
  ORGANISM  Klebsiella michiganensis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1865)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     2022CK-00495
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1865)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-APR-2023) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease submission group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.9.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 126.0x
            Sequencing Technology :: Oxford Nanopore GridION; Oxford Nanopore
            MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/01/2023 13:40:56
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7,393
            CDSs (total)                      :: 7,273
            Genes (coding)                    :: 7,098
            CDSs (with protein)               :: 7,098
            Genes (RNA)                       :: 120
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 175
            CDSs (without protein)            :: 175
            Pseudo Genes (ambiguous residues) :: 0 of 175
            Pseudo Genes (frameshifted)       :: 59 of 175
            Pseudo Genes (incomplete)         :: 121 of 175
            Pseudo Genes (internal stop)      :: 30 of 175
            Pseudo Genes (multiple problems)  :: 29 of 175
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1865
                     /organism="Klebsiella michiganensis"
                     /mol_type="genomic DNA"
                     /strain="2022CK-00495"
                     /isolation_source="Rectal Swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:1134687"
                     /plasmid="unnamed15"
                     /geo_loc_name="USA"
                     /collection_date="2022-02-25"
     gene            <1..494
                     /locus_tag="QJQ59_01870"
     CDS             <1..494
                     /locus_tag="QJQ59_01870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="WGZ96899.1"
                     /translation="EGSALPVGVPIPWPSATLPTGWLKCNGATFTASQYPKLALAYPAL
                     RLPDLRGEFIRGWDDSRGIDNGRALLSSQGHSLRDHSHNQQVWTGSNTTSSSVGQSGNY
                     APLATGGDGGIAYTDREPQSLPSAVRAIGTRGVASDNAANIGIETRPRNIALNYIVRAA
                     "
                     /name="phage tail protein"
     gene            494..1093
                     /locus_tag="QJQ59_01875"
     CDS             494..1093
                     /locus_tag="QJQ59_01875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016191668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="WGZ96900.1"
                     /translation="MDEAQLNHELIATIAGNITVFNFDGETREYLSSSVEYLAVGVGVP
                     ANSCVEAPGEARAGYAICRTQDLAAWEYISDHRGKTVYSIHFGTAIVLSDLGDYPADTT
                     LLAPGTPYDIWNGFEWVTDTDKKHLADIEAAEQQKAALTEDARATISLMQTELQLGVIS
                     NDDKASLINWLAYIRELQALDTNVAPDISWPVPPAR"
                     /name="tail fiber assembly protein"
     gene            complement(1065..1478)
                     /locus_tag="QJQ59_01880"
     CDS             complement(1065..1478)
                     /locus_tag="QJQ59_01880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001477732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="WGZ96901.1"
                     /translation="MTIFVSKTKPGFWVESNKPDDAREITDELWQSLLNENWTNGKEID
                     FSIYPPVSVVPPEPVYTKGDYIRMAESRRDSLRVKADSAIAPLKDAVDLSIATEAETSL
                     YNEWRKYRVLLNRVDTSTAPDINWPTEPEEQAS"
                     /name="tail fiber assembly protein"
     gene            complement(1478..>1865)
                     /locus_tag="QJQ59_01885"
     CDS             complement(1478..>1865)
                     /locus_tag="QJQ59_01885"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WGZ96902.1"
                     /translation="EAAERGVGTGENQLPDMGQFKANVGSSGFSIFFPPNNVIQAGKVN
                     ITTKQSGADGVYENSLIVSLAYAYKGFHLVIPVAHDVGGEGQLENAWLGVSAETDSARF
                     QVYASCRTANTVIPVTWLAIGVAN"
                     /name="hypothetical protein"
ORIGIN
        1 gggaaggctc tgctttgcca gttggcgtcc ccattccgtg gccatcagca acgctaccaa
       61 cggggtggct caaatgcaac ggagcaacgt tcacagcctc ccagtacccc aaactggctc
      121 tggcgtatcc tgcgctcaga ttgcctgatt tgcgaggtga gtttatccgc ggatgggatg
      181 atagtcgtgg tatcgacaac ggacgtgcgc tgctttcatc tcaaggccat tcactcaggg
      241 accactcaca taatcaacag gtatggacag gttcaaatac aacatcgtca agtgttggtc
      301 agagcggcaa ttatgctccg ctagcgactg gaggggatgg ggggattgcc tataccgaca
      361 gggagcctca aagcctacca tcagcagtaa gagctatcgg cacccgtggg gttgcttctg
      421 acaatgcagc gaacattggc attgaaaccc gcccgcgcaa catcgcatta aactacatcg
      481 tgagggctgc ataatggatg aagcacagtt aaaccatgag ttgattgcga ccatcgcagg
      541 caatatcacg gtcttcaact tcgatggcga gacccgcgaa tacttgtcgt cttctgttga
      601 gtatcttgcg gttggtgttg gggttccggc aaattcatgt gttgaagcac cgggtgaagc
      661 ccgcgcgggg tacgcgatct gccgaactca ggatttagcc gcgtgggagt atatatctga
      721 ccatcggggg aaaacggtat atagcatcca cttcggcacg gctattgtgc tttccgacct
      781 gggcgattat ccggcagata ccactctact ggcccccggt acaccatacg atatctggaa
      841 tggttttgaa tgggtgacgg ataccgataa gaaacatttg gcagatattg aagccgcgga
      901 gcaacaaaaa gcagcattga cagaagacgc cagggcaacc atcagtctca tgcagaccga
      961 gttacagctt ggtgtcatca gtaatgatga taaagccagc ctgattaact ggctggctta
     1021 tatcagggag ttgcaggcgc tggatacaaa tgtcgcccct gatatcagct ggcctgttcc
     1081 tccggctcgg taggccagtt aatgtcaggg gctgttgaag tatcaacacg atttagcagt
     1141 acccggtatt tgcgccattc gttgtacaaa gacgtttctg cttcggttgc tattgataaa
     1201 tccaccgcat cctttagcgg cgcaattgcc gaatccgctt tgacacgtag actgtcccgg
     1261 cgtgattcgg ccatcctgat atagtccccc ttggtgtata ccggttctgg cggcaccacc
     1321 gaaacgggtg gataaatcga aaaatcaatt tctttgccgt tagtccagtt ttcattaaga
     1381 agtgactgcc ataactcatc agtgatttct ctggcatcat ctggcttgtt cgactcaacc
     1441 caaaatcccg gtttagtttt agatacaaag attgtcatta gtttgccact cctattgcca
     1501 gccaggttac agggataacg gtattggcag tccggcatga tgcatatacc tgaaagcgtg
     1561 cgctgtctgt ttctgctgac acaccaagcc atgcattttc aagctgtcct tcaccgccaa
     1621 catcatgggc taccggaatg acgaggtgaa aacccttgta cgcataggcc aagctgacta
     1681 tgaggctgtt ttcataaacg ccatcggccc cactttgctt ggtggttata tttacctttc
     1741 ccgcctgaat gacgttattg ggcggaaaaa atatactaaa tcctgagcta cctacgttcg
     1801 ccttaaactg gcccatgtca ggcaactggt tttcaccggt tcccacaccc cgttcagccg
     1861 cttct
//
