LOCUS       CP123710                3071 bp    DNA     circular BCT 14-MAY-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Ohio strain FSIS11808786
            plasmid pFSIS11808786-3, complete sequence.
ACCESSION   CP123710
VERSION     CP123710.1
DBLINK      BioProject: PRJNA292666
            BioSample: SAMN08873584
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Ohio
  ORGANISM  Salmonella enterica subsp. enterica serovar Ohio
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3071)
  AUTHORS   Ge,B., Mukherjee,S., Li,C., Harrison,L.B., Hsu,C.H., Tran,T.T.,
            Whichard,J.M., Dessai,U., Singh,R., Gilbert,J.M., Strain,E.A.,
            McDermott,P.F. and Zhao,S.
  TITLE     Genomic analysis of azithromycin-resistant Salmonella from food
            animals at slaughter and processing, and retail meats, 2011-2021,
            United States
  JOURNAL   Microbiol Spectr 12 (1), e0348523 (2024)
   PUBMED   37991374
REFERENCE   2  (bases 1 to 3071)
  CONSRTM   NARMS: The National Antimicrobial Resistance Monitoring System
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JUL-2018) Center for Veterinary Medicine, US Food and
            Drug Administration, 8401 Muirkirk Rd, Laurel, MD, USA
REFERENCE   3  (bases 1 to 3071)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-MAR-2023) CVM/OAS, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 24-SEP-2021
            Assembly Method                   :: HGAP v. 4
            Assembly Name                     :: Microbial assembly
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 290x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/20/2023 12:06:27
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,829
            CDSs (total)                      :: 4,706
            Genes (coding)                    :: 3,795
            CDSs (with protein)               :: 3,795
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 911
            CDSs (without protein)            :: 911
            Pseudo Genes (ambiguous residues) :: 0 of 911
            Pseudo Genes (frameshifted)       :: 828 of 911
            Pseudo Genes (incomplete)         :: 97 of 911
            Pseudo Genes (internal stop)      :: 35 of 911
            Pseudo Genes (multiple problems)  :: 42 of 911
            Pseudo Genes (short protein)      :: 1 of 911
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3071
                     /organism="Salmonella enterica subsp. enterica serovar
                     Ohio"
                     /mol_type="genomic DNA"
                     /strain="FSIS11808786"
                     /serovar="Ohio"
                     /isolation_source="animal-swine-market swine"
                     /sub_species="enterica"
                     /db_xref="taxon:117541"
                     /plasmid="pFSIS11808786-3"
                     /geo_loc_name="USA:CA"
                     /collection_date="2018"
                     /collected_by="USDA-FSIS"
     gene            complement(865..1509)
                     /locus_tag="DBC23_24135"
     CDS             complement(865..1509)
                     /locus_tag="DBC23_24135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017900990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrB19"
                     /protein_id="WGN73772.1"
                     /translation="MTLALVGEKIDRNRFTGEKVENSTFFNCDFSGADLSGTEFIGCQF
                     YDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNVSALGIEIRHCRAQGADFRGASFMNM
                     ITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWMGTQVLGATFSGSDLSGGEFST
                     FDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDSYQASLLMERLGIAVIG"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrB19"
     gene            complement(1603..1758)
                     /locus_tag="DBC23_24140"
                     /pseudo=""
     CDS             complement(1603..1758)
                     /locus_tag="DBC23_24140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309907.2"
                     /note="incomplete; partial on complete genome; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /name="helix-turn-helix domain-containing protein"
     gene            2696..2845
                     /locus_tag="DBC23_24145"
     CDS             2696..2845
                     /locus_tag="DBC23_24145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017880354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WGN73771.1"
                     /translation="MPSEYDEQRGSTDTQLPGEYDLFDLMAKVTEEILHAPVDSGPPVG
                     REAL"
                     /name="hypothetical protein"
     ARG             complement(869..1509)
                     /name="qnrB19"
                     /gene="qnrB19"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrB19"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          2488..2661
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          complement(2018..2509)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.51"
                     /coverage="81.0"
                     /evalue="0.0"
ORIGIN
        1 ttaaggggag atcgtgacaa aaaaaagcgt tcctcactgt atcgttcatg caggcatgaa
       61 cgggttattc ttcctgacta cagaattaca tcgctccttc agttcataca tcacttttac
      121 aacactttta caacactcct tcggcctgta catcactttt acaacacttt tgcatcactt
      181 ttacatcatt tatacatcac ttttacatca ttccttcagc tcatacgtca ctttcatcct
      241 ctgtgccatt tgtacatcac ccccttcctg aacgtgctga cagcgggttt tccggctgcg
      301 ccggcaacgc ttcacggcca cgcaataaat tgcgtccccg ttcaccgttt tcggatggga
      361 agaacgccgg aaacaggact tcccctggct gaatggtgtg aatttccgcg ctatgcactt
      421 gcgcgcatac tcatgcatgc cgtaaaaaca gagcctgcgc gtttctggcg ggttttcggg
      481 tggtttgttg cctgttttac cggtttcccg tcagaaacgc cctcagagcc tctcaggcgg
      541 tgcacgcaag ggatgttatg tttaatcggt ctgaccgtca ggtacaaaaa aaagccctta
      601 gggggctttt tttttgctat gagttagcca tattttcgtt aagacatggc ttcatgattc
      661 gggagtggtt attcgttgtt ctcgcgaaaa tgaattggtt agatattcat caaattcctg
      721 tccagaatgc agcattagat ggcatgtcgt tgatgcggta ggtcaggata ttcgtccact
      781 ggagaaaacg tttcacaatg cttgccagga gtcgtactgg ttaaaagtaa atcgtcaaac
      841 gcatctcccg gtgtaaacgc tgaactaacc aatcacagcg atgccaagcc gctccatgag
      901 caacgatgcc tggtagctgt ctaacttaac gccttgtaaa tcaacacccc gaatatctaa
      961 gtcacctaac tccgaattgg tcagatcgca atgtgtgaag tttgctgctc gccagtcgaa
     1021 agtcgaaaac tcgccgccgg agagatctga accactgaac gtcgcaccca gtacctgagt
     1081 ccccatccag cggttttccc acagctcaca cttttccaac acgactttcg aaaaattggc
     1141 gtagcttaga ttagtattag tgatatatgc gctgcaaaac caggtgcgcg tggtgatcat
     1201 attcataaag cttgcaccgc ggaaatctgc gccttgtgcg cggcagtggc gaatttcaat
     1261 gcccaaggca ctgacgttgc ggaaatctgc cattgataaa tcacagcttt tgaaaatggc
     1321 atctttcagc attgcgcgac taaaattgca ccctttctga ctttcgcgat catagaactg
     1381 gcagccgata aattcagtgc cgctcaggtc ggcacctgaa aaatcgcagt taaaaaatgt
     1441 actattttca actttctcac cggtgaagcg atttctgtca attttttcgc caactaatgc
     1501 cagagtcata tctatgcctg tgtttttata cagtaatgac gccatggtaa accttatgac
     1561 gttatgcgtc aaacccgcca gtatgacacc tgcaaatacg tattagatct ggtgtttctt
     1621 cagcaaggca cgtagctgat gataagtcag acccagtaat tcagcggctt ttttctggtt
     1681 aaatttagcc tgctgtaagc tggtttgtag aaagtctttc tcttgctgct gctggaattc
     1741 acgcagatcc agcgttataa cgatgtgtat cctatgtgct cggattggat agatttccat
     1801 tacggtgaag gatcttcttg agatcctttc tgtggcgtcg taatctcttg ctctgtaaac
     1861 gaaaaaaccg ccctgcaagg cggtttttcg aaggttctca gagcagcaac tctttgaacc
     1921 gtggtaactg gcttacgagg agcgcagtaa ccaaatctgt tctttcagtt tagccttaac
     1981 aggcgcataa cttcaagact aactcctcta aatcagttac cagtggctgc tgccagtggc
     2041 gataagtcgt gtctttccgg gttggactca agatgatagt taccggataa ggcgcagcag
     2101 tcggactgaa cggggggttc gtgcatacag tccatccagg agcgaactgc cttcgcggaa
     2161 ctgagtgtca ggcgtggaat gagataaacg cggccataac agcggaatga caccggtaaa
     2221 ccgaaaggca ggaatgcggg ggagcacgag ggagccacca gggggaaacg cctggtatct
     2281 ttaagccgca tcgggtttcg ccaccactga tttgagcgtc agatttcatg atgtttgtca
     2341 ggggggcgga gcctatggaa aaacggcttc gccgcggcct tatctcttcc ctgttaagct
     2401 ccttcctggt atctcccagg aaatttccgc cccgcctgta agccggcacc gctcgccgca
     2461 gccgaacgac cgagcgcagc gagtcagtga gcgaggaagc ggaatatatc ctgtactaca
     2521 tatcctgctg acgcgctggt gccgcctttt ttctcctgct acatgaagca cttcactgat
     2581 ttccacatcc gtgccaacat agtcagccag tatacactcc gctagcgcta cgtgactggt
     2641 tcagggctgc gccccgaaac ccgctaacaa cctctctgct actggatatc accccatgcc
     2701 atctgaatat gatgaacaac ggggttcgac tgatacgcag cttcccggcg aatatgacct
     2761 ttttgattta atggcgaagg ttactgaaga gatcctgcat gcccctgtgg attctgggcc
     2821 gcctgtcggc cgggaagcgt tatagctttt tcgcttgccc gcgtacgtgg taatacgccg
     2881 gtattacctt ttatttcttt attttcatgt aattacagtg ggtttttaat acctgggtat
     2941 tactcgtgaa aacgaaacat tacttttttt tcttttaatt catgcagttg cgatgaaaat
     3001 cgcggctgcg ttaggtgtat gaccattttg aggttgaaaa ataatcaacc atggcgggtg
     3061 atttacgcag g
//
