LOCUS       CP123709                3223 bp    DNA     circular BCT 14-MAY-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Ohio strain FSIS11808786
            plasmid pFSIS11808786-2, complete sequence.
ACCESSION   CP123709
VERSION     CP123709.1
DBLINK      BioProject: PRJNA292666
            BioSample: SAMN08873584
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Ohio
  ORGANISM  Salmonella enterica subsp. enterica serovar Ohio
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3223)
  AUTHORS   Ge,B., Mukherjee,S., Li,C., Harrison,L.B., Hsu,C.H., Tran,T.T.,
            Whichard,J.M., Dessai,U., Singh,R., Gilbert,J.M., Strain,E.A.,
            McDermott,P.F. and Zhao,S.
  TITLE     Genomic analysis of azithromycin-resistant Salmonella from food
            animals at slaughter and processing, and retail meats, 2011-2021,
            United States
  JOURNAL   Microbiol Spectr 12 (1), e0348523 (2024)
   PUBMED   37991374
REFERENCE   2  (bases 1 to 3223)
  CONSRTM   NARMS: The National Antimicrobial Resistance Monitoring System
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JUL-2018) Center for Veterinary Medicine, US Food and
            Drug Administration, 8401 Muirkirk Rd, Laurel, MD, USA
REFERENCE   3  (bases 1 to 3223)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-MAR-2023) CVM/OAS, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 24-SEP-2021
            Assembly Method                   :: HGAP v. 4
            Assembly Name                     :: Microbial assembly
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 290x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/20/2023 12:06:27
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,829
            CDSs (total)                      :: 4,706
            Genes (coding)                    :: 3,795
            CDSs (with protein)               :: 3,795
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 911
            CDSs (without protein)            :: 911
            Pseudo Genes (ambiguous residues) :: 0 of 911
            Pseudo Genes (frameshifted)       :: 828 of 911
            Pseudo Genes (incomplete)         :: 97 of 911
            Pseudo Genes (internal stop)      :: 35 of 911
            Pseudo Genes (multiple problems)  :: 42 of 911
            Pseudo Genes (short protein)      :: 1 of 911
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Salmonella enterica subsp. enterica serovar
                     Ohio"
                     /mol_type="genomic DNA"
                     /strain="FSIS11808786"
                     /serovar="Ohio"
                     /isolation_source="animal-swine-market swine"
                     /sub_species="enterica"
                     /db_xref="taxon:117541"
                     /plasmid="pFSIS11808786-2"
                     /geo_loc_name="USA:CA"
                     /collection_date="2018"
                     /collected_by="USDA-FSIS"
     gene            432..917
                     /locus_tag="DBC23_24110"
     CDS             432..917
                     /locus_tag="DBC23_24110"
                     /inference="COORDINATES: protein motif:HMM:NF016710.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WGN73767.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     ENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGQFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            921..1136
                     /locus_tag="DBC23_24115"
     CDS             921..1136
                     /locus_tag="DBC23_24115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WGN73768.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            1304..1636
                     /locus_tag="DBC23_24120"
     CDS             1304..1636
                     /locus_tag="DBC23_24120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="WGN73769.1"
                     /translation="MNTYIFLGGAIVAEVIGTTFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     gene            complement(1845..2015)
                     /locus_tag="DBC23_24125"
     CDS             complement(1845..2015)
                     /locus_tag="DBC23_24125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WGN73766.1"
                     /translation="MHEPPVQSDYHARSGNYQLESNPERHDKSPVAVAIGNWVHGAEIV
                     ENAYRVLEVKA"
                     /name="replication initiation protein"
     gene            2654..2977
                     /locus_tag="DBC23_24130"
     CDS             2654..2977
                     /locus_tag="DBC23_24130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WGN73770.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     ARG             1305..1636
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          2367..2558
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.308"
                     /coverage="89.0"
                     /evalue="3.38e-71"
     Typing          complement(1904..2384)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.867"
                     /coverage="93.0"
                     /evalue="1.73e-132"
     Typing          3..1234
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.041"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          2655..2974
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.196"
                     /coverage="100.0"
                     /evalue="8.510000000000001e-64"
ORIGIN
        1 taaagaccag tacagcgtgc tgtgggttga gcaccgggac aaggggcggc tggagctgaa
       61 cttcctgatc ccgaacacgg agcttctgac cggcaagcgg ctacagccgt attacgaccg
      121 cgccgaccgt ccgcgcatcg atgcctggca gaccatagtg aacggcaggc tggggctgca
      181 tgacccgaac gcgccggaga accggcgggt gctggtctcg ccttccgcgc tgccggaagc
      241 gaagcaggaa gccgcccagg cgattacgag cggcctgctt gcccttgcct catccgggga
      301 gctgaaaacg cgtcaggacg tcactgaggc gctggaaagc gcaggttttg aggtggtgcg
      361 caccacaaaa agcagcatca gcattgccga cccggacggg gggcgaaaca tccgactgaa
      421 gggagccatc tatgaacagt cttttaacgc tggcgaagga cttagagcag aaatcgaaag
      481 cgcagcagca gactaccggc gagatgctga aagccgcatt cagcgagcac gagaagtctg
      541 tcagagcgga actgagcgaa agcgagaaga gaatcagcgc cgccatcctc gaccacgacc
      601 ggaagctgtc ctcagccatg agccagcgca cgaaagggat gctgcgcatg gtcagccaga
      661 cgtggctgac catcgttctg gtctccgcgc tgctgatagc gtcgagcgcg ggcattctgt
      721 ggtggcaggg gcagcagata ctcgagaact atacgaccat ccgggagcag aagagcacgc
      781 aggccatgct gtcagagagg aacagcggcg tacagctctc gacctgcggc gagcagagac
      841 gccgctgcgt gagggtgaac ccggaagcgg gacagttcgg agaggactcg agctggatga
      901 tactggcggg gaaatagcac atgacggagc tggaaaaaca gttgctgagc gcattagagc
      961 agctacagca ggactactcg aaaaggctgg acgagtggga gaacgccttc gcggaatggc
     1021 ggacgatgtc tggtcttatt caacgggaga acgcggcgct gaacgagcgc gtcacggtct
     1081 tgagcaggca ggtgcagagt ttgagcgagc agctgcgccg gttgtcgaaa ggctgaacgc
     1141 gatagaaact caccggcagc aggagcgggc ggtgcagcac cagaaagcgc tggagctgga
     1201 acgatcgcag tggcagcatc atggtccttc gctatgataa gccgggttct attaattagt
     1261 tgttatgtaa agatatttaa atttttcaac atgaggtatt tttatgaata catatatttt
     1321 cctgggaggg gctattgtgg ctgaagtcat aggcaccacc tttatgaaat attcagaagg
     1381 atttacacgc ctgtggccgt ctgtaggaac tgcaataagt tattgcgctg ccttttatct
     1441 gctttcccaa acattggaaa atatacctac cggtattgct tacgcaattt ggtctggtgc
     1501 gggaattgta ctaataagcc tagctggttg gttggttagc ggtcaaaaac ttgattggcc
     1561 cgcaattgca ggaatgttcc ttatttgcgt tggagttttg gttattaata ttttttcaaa
     1621 atcttctgcg cattaacttt ttaccgaagc atattggcca aagcaaaagg atttccttga
     1681 gatcctttct ttctgcgcgt aatctttttc cctgtaaaca aaaaaaccac cgctaccaac
     1741 ggtggttcgt ttgccggaat tcagagctac caactctttg ttccgatggt aactggcttt
     1801 cacggagcgc agatacctaa actgtccttt cagtgtagcc gcactcaggc tttcacttca
     1861 agaactctgt aggcattctc tacaatctct gctccgtgaa cccagttacc aatggctacc
     1921 gccactggcg atttgtcgtg tctttccggg ttggactcaa gttgatagtt accggaacgg
     1981 gcgtggtagt cggactgaac ggggggttcg tgcatacagt ccatcctgga gcgaactgcc
     2041 tacccggaac cgagtttcag gcgtggaatg agaaaccgcg gccataacag cggaatgaca
     2101 ccggtaaacc gaaaggcagg aatgcggggg agcacgaggg agccaccagg gggaaacgcc
     2161 tggtatcttt aagccgcatc gggtttcgcc accgctgatt tgagcgtcat tttcgtgata
     2221 ctcgtcaggg gggcggagcc tatggaaaaa cggcaactcc gcatcctttt cttggccttt
     2281 cctgcttcga gcggcatttg cttatcccgt aatctgtgag ctggtaacgc ccgccgcagt
     2341 ctcacggcag gagcgtagcg accgagtgag cgaggaggcg tcatttcatc accacctgca
     2401 ttttgcactt acgcccggca gccgcatttt tcccctgtca catgaagcac tttcataaat
     2461 tgccactccg tcataacatg tttagccagt atacactccg ctagcgctac gtgactggtt
     2521 cagggctgcg ccccgaaacc cgctaaaacc actgccgcgc ctgcggcttg tccaacaccg
     2581 tgccgaccgg gaaaagattt cccgtccgtc ccggcgttat caggaggccg gattggcaga
     2641 caaacgcagc aaaatgctca ccatgtgggt gactgaggac gagcaccggc gtctgctgga
     2701 gcgctgcgag ggtaagcaac tcgcggcctg gatgcggcag acgtgcctgg acgagaagcc
     2761 cgcacgcgcc ggcaaacttc cgtcgatctc gccggcgctg cttcgtcagc ttgccggcat
     2821 ggggaacaac cttaaccaga ttgcccgcca ggttaacgcc ggtggtggaa gcggacacga
     2881 ccgcgtgcag attgtcgccg cgctgatggc catcgatgcc ggactcgagc ggttgcggca
     2941 tgccgtactg gaaaagggtg ctgatgatga tcgttaagtt tcatcctcgg gggcgcggcg
     3001 gcggcggcgg gccggtcgat tatctgctgg gtaaagatcg ccagcgcgac ggcgccagcg
     3061 ttctgcaggg gaagccggat gaagtccggg agcttatcga cgcctcgccc tacgccaaaa
     3121 agtacacttc cggcgttctg tcttttgccg aacaggattt accgcccggc cagcgcgaaa
     3181 agctgatggc gagtttcgag cgggttctga tgcccggact cga
//
