LOCUS       CP123654                3811 bp    DNA     circular BCT 18-JUL-2023
DEFINITION  Salmonella enterica strain 19MN02PC03 plasmid pN19S0223-4, complete
            sequence.
ACCESSION   CP123654
VERSION     CP123654.1
DBLINK      BioProject: PRJNA292661
            BioSample: SAMN12096813
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3811)
  AUTHORS   Ge,B.
  TITLE     Genomic Analysis of Azithromycin-Resistant Salmonella from Food
            Animals and Retail Meats, 2015-2021, United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3811)
  CONSRTM   NARMS: The National Antimicrobial Resistance Monitoring System
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JUN-2019) Center for Veterinary Medicine, US Food and
            Drug Administration, 8401 Muirkirk Rd, Laurel, MD, USA
REFERENCE   3  (bases 1 to 3811)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-MAR-2023) CVM/OAS, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 24-SEP-2021
            Assembly Method                   :: HGAP v. 4
            Assembly Name                     :: Microbial assembly
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 476x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/20/2023 10:30:24
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,007
            CDSs (total)                      :: 4,888
            Genes (coding)                    :: 4,756
            CDSs (with protein)               :: 4,756
            Genes (RNA)                       :: 119
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 132
            CDSs (without protein)            :: 132
            Pseudo Genes (ambiguous residues) :: 0 of 132
            Pseudo Genes (frameshifted)       :: 58 of 132
            Pseudo Genes (incomplete)         :: 82 of 132
            Pseudo Genes (internal stop)      :: 24 of 132
            Pseudo Genes (multiple problems)  :: 30 of 132
            Pseudo Genes (short protein)      :: 1 of 132
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3811
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="19MN02PC03"
                     /isolation_source="Pork Chop"
                     /db_xref="taxon:28901"
                     /plasmid="pN19S0223-4"
                     /geo_loc_name="USA:MN"
                     /collection_date="2019-02-01"
                     /collected_by="MN"
     gene            complement(join(3209..3811,1..897))
                     /locus_tag="FJ638_25025"
     CDS             complement(join(3209..3811,1..897))
                     /locus_tag="FJ638_25025"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="WGN04814.1"
                     /translation="MIVKFHPRGRGGGAGPVDYLLGKDRQREGATVLQGKPEEVRELID
                     ASPYVKKYTSGVLSFAEADLPPGQREKLMASFERVLMPGLDKDQYSILWVEHADKGRLE
                     LNFLIPNTELLTGRRLQPYYDHADRPRIDAWQTIVNGRLGLHDPNAPENRRALVTPSGL
                     PKTTQEAAEAITRGLLSLASSGELKSRQDVTEALEGAGFEVVRTTKSSISIADPDGGRN
                     IRLKGAIYEQSFYGLEGLRGEIESAAAEYRRDAESRIQRARAVCQSGTERKREENQRRH
                     PRPRAEYERGDGEKPAERTADCRADMAHHPDGVSAADRHEREHSVVAGAADNRQLHASS
                     SAGRYPGENDRPDVGSALSGEQRRPEVSYPAAGDANRSHPLRRDDMDPPETGVAENDRA
                     GKAVAERIRAATAGLLAKAGRMGERLRGMAEHVWSYATGERDAERARVGLEHAGAEFKR
                     AAAPLVRELNAIELRHREHEYQKTLELEHQPQKTYRGPTLG"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(887..1210)
                     /locus_tag="FJ638_25030"
     CDS             complement(887..1210)
                     /locus_tag="FJ638_25030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WGN04815.1"
                     /translation="MLTMWVTEDEHRRLLERCDGRQLAAWMRQICLDEKPARTGKLPSI
                     SPALLRQLAGMGNNLNQIARRVNAGGGTGHDRVQIVAALMAIDAGLERLRHAVLEKGTD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            complement(2365..2706)
                     /locus_tag="FJ638_25035"
     CDS             complement(2365..2706)
                     /locus_tag="FJ638_25035"
                     /inference="COORDINATES: protein motif:HMM:NF019884.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain containing protein"
                     /protein_id="WGN04813.1"
                     /translation="MAKPPSATPPDTPSSCDVSALPGIIQNFGLINFNVSCNNGELTVT
                     GTDQNGKHIRVNSYQGNGFTEGTMSTFQPGGKEARRLEAVRLRESGLTQQEIANRLGVS
                     QKTISNDLK"
                     /name="helix-turn-helix domain containing protein"
     Typing          complement(1324..1497)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.714"
                     /coverage="100.0"
                     /evalue="5.6599999999999995e-68"
     Typing          1464..1972
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.118"
                     /coverage="96.0"
                     /evalue="0.0"
     Typing          complement(2..897)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.987"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(3216..3811)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="96.482"
                     /coverage="100.0"
                     /evalue="2.59e-119"
ORIGIN
        1 acgctccgcc ggtttttctc catcgcctcg ctcatactct gctcgtgggc gaggatggcg
       61 tcgctgattc tcctcgcgct tgcgctcagt tccgctctga cagactgctc gtgctcgctg
      121 aatgcggctt tcagcatctc gccggtactc tgctgctgcg ctttcaattt ctcctcgaag
      181 tccctcgagg ccgtaaaaag attgctcata gatagctccc ttcagtcgga tgtttcgccc
      241 cccgtccggg tcggcaatgc tgatactgct tttcgtggtg cgcaccacct caaaacctgc
      301 accttcaaga gcctcagtga cgtcctgacg gcttttcagc tccccggacg aggctaagct
      361 cagtagtccc cgggtaatgg cttctgcggc ctcctgcgtc gttttcggca gcccggacgg
      421 cgtgaccagc gcccggcggt tttccggcgc gttcgggtcg tgcagcccca gtctcccgtt
      481 cacgatagtc tgccaggcat cgatgcgcgg ccggtcggcg tggtcgtagt aaggctggag
      541 ccgcctgccg gtcagcagct cggtattggg gatcagaaag ttcagctcca gacgcccctt
      601 gtccgcgtgc tccacccaca gaatgctgta ctgatcttta tcgagtccgg gcatcagaac
      661 ccgctcgaag ctggccatca gtttttcccg ctggccggga gggagatcgg cctccgcaaa
      721 cgacaggacg ccggaggtgt atttcttcac gtaaggcgac gcgtcaatca gctcccggac
      781 ttcttccggc ttcccctgca ggacggtggc gccttcacgc tgccggtctt tacccagcag
      841 atagtccacc ggcccggcgc caccgccgcg accccgtgga tgaaatttaa cgatcatcgt
      901 ccgttccttt ctcaagaacg gcgtgccgca gccgctcaag tccggcatcg atggccatca
      961 gcgccgccac aatctgcacc ctgtcatggc cggtaccgcc gccggcgtta acacggcggg
     1021 ctatctggtt caggttattg cccatgccgg caagctggcg cagcagcgcc ggcgagattg
     1081 agggaagctt tccggtacgc gcaggctttt cgtccaggca gatctgccgc atccacgccg
     1141 ccagctgcct gccgtcacag cgctcgagca gccgccggtg ctcgtcctcc gtcacccaca
     1201 tggtgagcat cttgctccgt ttctctgaca aaccggcctc ctgataacgc cgggacgggc
     1261 gggaaagcct ttcccggtcg gcgcggggtt ggacaagccg caggcgcgtc aggcttttgg
     1321 cgggtttcgg ggcgcagccc tgaaccagtc acgcagcgct agcggagtgt atactggctt
     1381 actatgttgg catggatgcg gaaatcagtg aagtgcttca tgtggcagga gaaaaaaggt
     1441 ggcaccggcg cgtcaacaga agatgcaata caggagatat tccgcttcct cgctcactga
     1501 ctcgctgcgc tcggtcgttc ggctgcggcg agcggtaccg gcttacgaat ggggcggaaa
     1561 tttcctggta gatgccagga aggaacttaa cagggaaacg ataaggccgc ggcaaagccg
     1621 tttttccata ggctccgccc ccctgacaag catcacgaaa tctgacgctc aaatcagtgg
     1681 tggcgaaacc cgacaggact ataaagatac caggcgtttc cccctgatgg ctccctcgtg
     1741 cgctctcctg ttcctgcctt tcggtttacc ggtgtcactc cgctgttatg gccgcgttta
     1801 tctcattcca cgcctgacac tcggttccgg gtaggcagtt cgctccaagc tggactgtat
     1861 gcacgaaccc cccgttcagt ccgactgctg cgccttatcc ggtaactatc gtcttgagtc
     1921 caacccggaa agacacgaaa aaacgccact ggcagcagcc actggtaaca ggattagcag
     1981 agcgagatat gtaggcggtg ctacagagtt cttgaagtgg tggcctaact acggctacac
     2041 tggaaggaca gtatttggta tctgcgctct gctgaagcca gttaccaggt taagcagttc
     2101 cccaactgac ttaaccttcg aaaaaccgcc tccccaggcg gttttttcgt tttcagagaa
     2161 agagattacg atgcaatgga aaggatctca agaagatcat tattgatgtt cgacatatat
     2221 ggggatctgc accatggctt aaaataaaca tctgaaatgt atctttaggt gtttcaccac
     2281 tgcgggacga gcaactacgc cggatttatc atggcatttc agtagcgatg aaaagcccgt
     2341 taagacgggc ttaaagcaag tgactcattt taaatcattg cttatagttt tttgagaaac
     2401 gcctaaccgg tttgctattt cttgctgcgt aagcccactt tctcttaaac gaacagcctc
     2461 aagtcttctg gcctctttac ctccgggctg aaacgttgac attgtacctt cggtaaagcc
     2521 gttcccttgg tagctgttaa ctcttatgtg tttcccattt tgatccgtac ccgttaccgt
     2581 tagctcaccg ttattgcagg atacgttaaa gttaattaag ccaaaatttt ggataatgcc
     2641 tgggagagca ctaacatcac atgaagatgg tgtatccggt ggtgtagctg atggaggttt
     2701 tgccattgtg cgttccttga tttttacgat gcatccatac tagtaaatac tagaaaacta
     2761 gtaatatcaa taatccatat ccctttaggc catcaccgaa gcccctgctt atagtcactt
     2821 ctccccctac atttaccata acatccgttg cccgcaccgc tgaaacgggg ttggctgcgt
     2881 ttccggtgcc agacgcgaga aagtggcgac agacataacg aaaaaacacc agaaacgcag
     2941 ccgctggata ttacactgat gcatagtcat gcagccagat gcatgccgcg taaagtcaca
     3001 ctaaaatcag cgcgaacgcc ttaaaaacag gaaagtgctt ctccagccag tcccagatct
     3061 ccagcgccat gtacaggcag ttcagcaccg tctcaatcac gttaaacagt ctcataatcc
     3121 ctccgttgta tacgctgtga tgtttccatc acgaccgtat ttagcgggaa atttatgagc
     3181 ccttcttctt ggggtttgtc acgggccgtc agcccagcgt tgggccacgg taggttttct
     3241 gcggctggtg ctccagctcc agtgttttct gatactcatg ctccctgtgc cggagctcga
     3301 tggcattcag ctcccggaca agcggcgcag ctgctcgctt aaactcagca cctgcgtgct
     3361 caagtccgac acgcgctcgt tcagcatcgc gttctcccgt tgcataagac cacacatgct
     3421 ctgccattcc gcgaaggcgc tctcccattc gtccagcctt tgcgagtagt cctgctgtag
     3481 ctgctctaat gcgctcagca actgcttttc cagctctgtc attttccgct actcctgttt
     3541 caggcggatc catgtcgtcc cgtcgtaagg gatggcttcg gtttgcatcc ccggcggcag
     3601 gataagaaac ctccggccgt cgctgctctc ctgatagcgc actccccacg tccgggcggt
     3661 cattttcgcc agggtatctt cctgctgacg aagatgcgtg taattgtcgg ttatctgctg
     3721 cccctgccac cacagaatgc tcccgctcgt gccgatcagc agcgctgaca ccatcaggat
     3781 ggtgagccat gtccgcccgg cagtccgcag t
//
