LOCUS       CP123647                2096 bp    DNA     circular BCT 14-JUN-2023
DEFINITION  Salmonella enterica strain 21OH06GT03-S1 plasmid p21OH06GT03-S1-4,
            complete sequence.
ACCESSION   CP123647
VERSION     CP123647.1
DBLINK      BioProject: PRJNA292661
            BioSample: SAMN23009289
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Ge,B.
  TITLE     Genomic Analysis of Azithromycin-Resistant Salmonella from Food
            Animals and Retail Meats, 2015-2021, United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2096)
  CONSRTM   NARMS: The National Antimicrobial Resistance Monitoring System
  TITLE     Direct Submission
  JOURNAL   Submitted (13-OCT-2020) Center for Veterinary Medicine, US Food and
            Drug Administration, 8401 Muirkirk Rd, Laurel, MD, USA
REFERENCE   3  (bases 1 to 2096)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-MAR-2023) CVM/OAS, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 24-SEP-2021
            Assembly Method                   :: HGAP v. 4
            Assembly Name                     :: Microbial assembly
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 198x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/20/2023 10:06:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,552
            CDSs (total)                      :: 4,431
            Genes (coding)                    :: 4,298
            CDSs (with protein)               :: 4,298
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 17
            Pseudo Genes (total)              :: 133
            CDSs (without protein)            :: 133
            Pseudo Genes (ambiguous residues) :: 0 of 133
            Pseudo Genes (frameshifted)       :: 60 of 133
            Pseudo Genes (incomplete)         :: 90 of 133
            Pseudo Genes (internal stop)      :: 30 of 133
            Pseudo Genes (multiple problems)  :: 42 of 133
            Pseudo Genes (short protein)      :: 1 of 133
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="21OH06GT03-S1"
                     /isolation_source="ground turkey"
                     /db_xref="taxon:28901"
                     /plasmid="p21OH06GT03-S1-4"
                     /geo_loc_name="USA:OH"
                     /collection_date="2021-06-04"
                     /collected_by="The Ohio State University"
     gene            join(1728..2096,1..621)
                     /locus_tag="LNS16_22760"
     CDS             join(1728..2096,1..621)
                     /locus_tag="LNS16_22760"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WGM95009.1"
                     /translation="MKNPDLQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRMKVRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVDYDPNVDVRAVKPRKPKGG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESG"
                     /name="protein rep"
     Typing          624..705
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.976"
                     /coverage="90.0"
                     /evalue="3.4000000000000004e-27"
     Typing          complement(348..539)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.964"
                     /coverage="100.0"
                     /evalue="6.14e-93"
ORIGIN
        1 atcggggagc tgggcgagat gctgaaccgg atgaatgcag cttttcagcg catgaaggtt
       61 cgcaaggagt tccggcctgt gcagggctgg atacgtacca cggaagtcac ccgcgggagc
      121 gacggcagcg cacacccgca cttccacacc ctgatgatgg tgccgcctgg catgctaaat
      181 gggaaaagtt acgtcaggca tgaacgctgg gttgaactct ggcgggagtg tctgcgggtc
      241 gattatgacc cgaatgttga tgtccgggca gtgaaacctc gtaagccgaa gggcggcgaa
      301 tcgctggcct gcgcgaccgc cgaactggtg cgcggtgcgg tggccgaaac cctgaaatat
      361 tccacgaagc cggctgacat ggtggccgat cctgaatggt tcctcgaact gacccgccag
      421 acgcacaagc gccgctttgt ggcgaccggc ggcgcactca aagacgtgct gaaactcgat
      481 caggaaactg acgccgacat ggtgatcggt gatgatattt ccgagggcga cgatgacggt
      541 tcacgaatcg cgttcgagtg gaaaaccgag gtcagaaagt accgtcgctc accgacgaaa
      601 gataaaactg aatcaggcta gcggggtgtc ggggtgcacc cctgaccaga tggcaattgt
      661 gatagcgtcg cgtgtgacgg tattacaatt acacatcctg tcccgaaaat tcccgccgtt
      721 tctcggtttt ttgagcgtcg cagaccgcac gacaaacgaa cctaaggtga gtttgtataa
      781 gtgcgcactt cgtgagattc cctgactgcc agtttgtcga ttgcgcggaa cggctgcggc
      841 acgaaaacgg caaaatgatt tactcgccgt ttgtgtgggt tgttttgtgg ggtgtcaatg
      901 gggttgtggt cttttttgtg ggttaaagtg tgggtgattg tgtgggctgt gtgttttgag
      961 ttgtgggtga ttatgtgggt cattgtgtgg gctgtatgca cggcattttt ttgttctcct
     1021 aaaacacagg cacgataagc ggcgtacaca aaacggggcg tttcgctccg tcgcttgtgc
     1081 caaaggggac acccctttgc aaccctgtgc ggttctacga acctggtcag gactgcgccc
     1141 cgacaccccg ccaacgcctc acggaacgcg aaaaaattcc gcgtaccgtt caccgttccc
     1201 tgattcgtca aacagaaaat cgcgggggcc cgcgcctccg gcgtgggttc cgattttgtg
     1261 attgacgacg gcacgggaaa aacactgggg atggtggttg gtgtcacgca gtgaggccaa
     1321 ccacctgcaa gacggttttt tttgttgttc acaaaatcgg ggtgaaagtc tgtggatgag
     1381 atgggtgtaa gtgggtgggg ttgggtgttt tgggtgactg aaaatcccgc tcaaaattca
     1441 agcgaatgtc gcgcgcgatc cttgtattta tacttaaggg ataactctag gattcaaatt
     1501 cgcctccagc ccttgtgccg caaggcctga agggggattt gtcggaaaat ggttttggag
     1561 ttattctgtc gggagtggtc gcattaaaag cgacccccgc aacgagggca atcgttcggg
     1621 ggtgtgacca cctgtaggaa ttcgaattgg tgatacgact aacacaacag gtgatatggc
     1681 aatgataaca cgtcagatga gccatcgccc actatcgggt ggtgcgcatg aaaaaccctg
     1741 atctccagaa cctcacggac tattccccct cagatgcgcc ctgggacgct cacagaagcg
     1801 tttctgatga cgtgggaggg atttacctgc ttgcagccga atatgagcgc tacggggcgc
     1861 gtatggccct ctgtggtggt ttactgcgtt tcgggtggtc taccctcaag gaaaccggag
     1921 aaacgcgtct gaggctgcgt gaggcgcatt tctgccgtgt ccggcattgt cctgtctgcc
     1981 agtggaggcg ctccctgatg tggcaagccc gtttctacca gtccctgccg cgtatcgtgg
     2041 cggattatcc cgatgcccgc tggatgttcc tgactctgac cgtgcgcaac tgtgcg
//
