LOCUS       CP123646                2257 bp    DNA     circular BCT 14-JUN-2023
DEFINITION  Salmonella enterica strain 21OH06GT03-S1 plasmid p21OH06GT03-S1-3,
            complete sequence.
ACCESSION   CP123646
VERSION     CP123646.1
DBLINK      BioProject: PRJNA292661
            BioSample: SAMN23009289
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2257)
  AUTHORS   Ge,B.
  TITLE     Genomic Analysis of Azithromycin-Resistant Salmonella from Food
            Animals and Retail Meats, 2015-2021, United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2257)
  CONSRTM   NARMS: The National Antimicrobial Resistance Monitoring System
  TITLE     Direct Submission
  JOURNAL   Submitted (13-OCT-2020) Center for Veterinary Medicine, US Food and
            Drug Administration, 8401 Muirkirk Rd, Laurel, MD, USA
REFERENCE   3  (bases 1 to 2257)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-MAR-2023) CVM/OAS, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 24-SEP-2021
            Assembly Method                   :: HGAP v. 4
            Assembly Name                     :: Microbial assembly
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 198x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/20/2023 10:06:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,552
            CDSs (total)                      :: 4,431
            Genes (coding)                    :: 4,298
            CDSs (with protein)               :: 4,298
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 17
            Pseudo Genes (total)              :: 133
            CDSs (without protein)            :: 133
            Pseudo Genes (ambiguous residues) :: 0 of 133
            Pseudo Genes (frameshifted)       :: 60 of 133
            Pseudo Genes (incomplete)         :: 90 of 133
            Pseudo Genes (internal stop)      :: 30 of 133
            Pseudo Genes (multiple problems)  :: 42 of 133
            Pseudo Genes (short protein)      :: 1 of 133
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2257
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="21OH06GT03-S1"
                     /isolation_source="ground turkey"
                     /db_xref="taxon:28901"
                     /plasmid="p21OH06GT03-S1-3"
                     /geo_loc_name="USA:OH"
                     /collection_date="2021-06-04"
                     /collected_by="The Ohio State University"
     gene            complement(276..1265)
                     /locus_tag="LNS16_22750"
     CDS             complement(276..1265)
                     /locus_tag="LNS16_22750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WGM95008.1"
                     /translation="MKNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRLKDRKEFRPVQGWIRTTEVTRSS
                     DGSAHPHFHTLMMVPPSMLSGDGYVKHARWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLAGATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESD"
                     /name="protein rep"
     gene            complement(1810..2037)
                     /locus_tag="LNS16_22755"
     CDS             complement(1810..2037)
                     /locus_tag="LNS16_22755"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WGM95007.1"
                     /translation="MYSRHTVGTPNILVRAAPRHPANASRHAKKFRVPLTVPELVKQKI
                     AGSRAFGVGSDFVIDDVTGKTLGMVVGVTQ"
                     /name="hypothetical protein"
     Typing          complement(193..273)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.341"
                     /coverage="89.0"
                     /evalue="5.64e-30"
     Typing          359..550
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.891"
                     /coverage="100.0"
                     /evalue="2.88e-86"
ORIGIN
        1 aattctggcg aacggacagc gaattatttt gccatttttg tcgcgcagct ccgccacgcg
       61 ttcgacaagc tggcggcaca gaacacccac gaagtgcgca cttatacaaa cttcacttcg
      121 tttcgtttgt cgtgcgatct gcgatgctca aaaaaccgag aaacggcggg aattttcggg
      181 acgggaattt tcgggacagg atgtgcaatt gtaataccgt cacacgcgac gctatcacaa
      241 ttgccatctg gtcagggctg caccccgaca ccctgctagt ctgattcagt tttatctttc
      301 gtcggtgagc gacggtactt tctgacctcg gttttccact cgaacgcgat gcgtgaaccg
      361 tcatcgtcac cctcggaaat atcatcccca atcaccatgt cggcatcggt ttcctgatcg
      421 agcttcagta cgtctttgag tgcaccgccg gtcgccacaa agcggcgctt gtgcgtctgg
      481 cgggtcagtt cgaggaacca ttcaggatcg gccaccatgt cagccggctt cgtggaatat
      541 ttcagggttt cggccaccgc accgcgcacc agttcggcag tggcaccggc cagcgattcg
      601 ccatcctttg gcttacgggg ttttactgcc cggacatcaa cattcgggtc gtaactgacc
      661 cgcaggcact cccgccagag ttcaacccag cgagcatgtt ttacgtaacc gtcaccagat
      721 agcattgagg gcggcaccat catcagggtg tggaagtggg gatgtgcgct gccgtcactg
      781 ctgcgggtga cttccgtggt gcgtatccag ccctgaacag gccggaactc cttgcgatcc
      841 ttcagtcgct ggaaagctgc attcatccgg ttcagcatct cgcccagctc cccgatcgca
      901 cagttgcgca cggtcagggt caggaacatc cagcgggcat cagggtaatc cgccacgata
      961 cgcggcaggg actggtagaa acgggcttgc cacatcaggg agcgcctcca ctggcagaca
     1021 ggacagtgcc ggacacggca gaaatgcgcc tcacgcagcc tcagacgcgt ttctccggtt
     1081 tccttgaggg tagaccaccc gaaacgcaat aaaccgccac agagggccat acgcgccccg
     1141 tagcgctcat attcggccgc aagcaggtaa atccctccca cgtcgtcaga aacgcttctg
     1201 tgagcgtccc agggcgcatc tgagggggaa tagtccgtga ggttctggag ttcaggattt
     1261 ttcatgcaca ccacccgatt gtgggcgatg gctcatctga cgtgttatca ttgccatatc
     1321 acctgtgtta gccgtatcac caattcgaat ctctacaggt ggtcacgccc ccgaacgatg
     1381 cccgtcgttg cgggggtcac ttttaacgcg accacttccg acagaatact tccaaaccca
     1441 tttcggagca aatgtgccct caagccttgc gggacaaggg ctggaggcca atttgaatcc
     1501 cagagttatc ccttaagtat aaatacaagg aacgcgcgcg agctttgagc aaaaaataaa
     1561 cgcaaaatca gcgctttttc acaaccaaaa acctcaacaa caccagaagc gggatcgcaa
     1621 tgctaagcgc cgcatcaatg cgatcaaaag cctcaaaaaa catcttcacc tcccacaaag
     1681 ttttataaat ctatctggtt tgtgattttc gcatccgtgt tttcgttttg cagtactgcc
     1741 aatttaattt catacgttaa aaccatatcc agcagcagat ctttcaaacc gcctcgcagg
     1801 tggttggtct cactgcgtga caccaaccac catccccagt gttttccccg tgacgtcgtc
     1861 aatcacaaaa tcggaaccca cgccaaaggc gcgggacccc gcgattttct gtttgacgag
     1921 ttcgggaacg gtgagcggta cgcggaattt tttcgcgtgc cgtgaggcgt tggcggggtg
     1981 tcggggcgca gccctgacca ggatgtttgg agtaccgacc gtgtggcggg aatacaaaca
     2041 tgtatcttgt cccgactccg cagcggtttt tttgtttgtt gaaccgactg taggtcaccg
     2101 ggcaaacgtt gcgaaatggc gtcagagacg tcactttgcg gcgtttgccc tatcctgcat
     2161 cggagtaaaa cacggggatt tcttgttccg atttttttgc cggaacgctg gcaattttct
     2221 gccgttctgc gctcctgcag ctaccacggc cgtgcaa
//
