LOCUS       CP123645                5631 bp    DNA     circular BCT 14-JUN-2023
DEFINITION  Salmonella enterica strain 21OH06GT03-S1 plasmid p21OH06GT03-S1-2,
            complete sequence.
ACCESSION   CP123645
VERSION     CP123645.1
DBLINK      BioProject: PRJNA292661
            BioSample: SAMN23009289
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5631)
  AUTHORS   Ge,B.
  TITLE     Genomic Analysis of Azithromycin-Resistant Salmonella from Food
            Animals and Retail Meats, 2015-2021, United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5631)
  CONSRTM   NARMS: The National Antimicrobial Resistance Monitoring System
  TITLE     Direct Submission
  JOURNAL   Submitted (13-OCT-2020) Center for Veterinary Medicine, US Food and
            Drug Administration, 8401 Muirkirk Rd, Laurel, MD, USA
REFERENCE   3  (bases 1 to 5631)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-MAR-2023) CVM/OAS, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 24-SEP-2021
            Assembly Method                   :: HGAP v. 4
            Assembly Name                     :: Microbial assembly
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 198x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/20/2023 10:06:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,552
            CDSs (total)                      :: 4,431
            Genes (coding)                    :: 4,298
            CDSs (with protein)               :: 4,298
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 17
            Pseudo Genes (total)              :: 133
            CDSs (without protein)            :: 133
            Pseudo Genes (ambiguous residues) :: 0 of 133
            Pseudo Genes (frameshifted)       :: 60 of 133
            Pseudo Genes (incomplete)         :: 90 of 133
            Pseudo Genes (internal stop)      :: 30 of 133
            Pseudo Genes (multiple problems)  :: 42 of 133
            Pseudo Genes (short protein)      :: 1 of 133
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..5631
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="21OH06GT03-S1"
                     /isolation_source="ground turkey"
                     /db_xref="taxon:28901"
                     /plasmid="p21OH06GT03-S1-2"
                     /geo_loc_name="USA:OH"
                     /collection_date="2021-06-04"
                     /collected_by="The Ohio State University"
     gene            join(5106..5631,1..341)
                     /locus_tag="LNS16_22710"
     CDS             join(5106..5631,1..341)
                     /locus_tag="LNS16_22710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001335763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0005215 - transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="WGM95002.1"
                     /translation="MIKGMLFAFLAAFSWGAAIVMSKKGVEELDAGGVFFWQICSAVIL
                     SWIVLFIKRKKLPLNSKAILAYATGVFEPFLAYTFTLYGLYFISAGSASIIFSLESVFI
                     LVLSVLICSVKINSPQYFILFLIGAIVGSILVALPDISNGSNNIVGYCLVVAGVLSAAF
                     YVVISSRLIKSFEPITLLSGQLTFSLILSSLFIFISKSSIYLPLESVIIVFSSGILQYF
                     LAFCFYLNSLRWLPVHLAGIMLYFIPLVALFLSWLFLDEQFTFLQGVGFIVTVLSVYFL
                     NRKYSEE"
                     /name="DMT family transporter"
     gene            1201..1521
                     /locus_tag="LNS16_22715"
     CDS             1201..1521
                     /locus_tag="LNS16_22715"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WGM95003.1"
                     /translation="MDNRVSVFEKGESARRSRTTERSESVSEEAEERLNWHFLLTHLCG
                     ISHRTWRTFHTIRTDAEWLSQYTLRYRYVTGSGLRPDTPKVNGLTRPGGLVCSRHPLTD
                     KL"
                     /name="hypothetical protein"
     gene            complement(1544..1735)
                     /locus_tag="LNS16_22720"
     CDS             complement(1544..1735)
                     /locus_tag="LNS16_22720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WGM95004.1"
                     /translation="MTKQEKTALNMARFIRGQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGENR"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1800..2123
                     /locus_tag="LNS16_22725"
     CDS             1800..2123
                     /locus_tag="LNS16_22725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WGM95006.1"
                     /translation="MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGKLPTL
                     APPLLRQLAAIGNNLNQTARKVNSGQWSSGDRVQVVAALMAIGDELRRLRLAVREQGAR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2332..2763
                     /locus_tag="LNS16_22730"
                     /pseudo=""
     CDS             2332..2763
                     /locus_tag="LNS16_22730"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            2801..3331
                     /locus_tag="LNS16_22735"
     CDS             2801..3331
                     /locus_tag="LNS16_22735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001673158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WGM95005.1"
                     /translation="MSNLLQTGAEFEKKLKERAESTEKMLNDEFRKLEESVNRELTSNE
                     SLIRNAINDHTTALKELLERYQKTTVDTMDAHWKTVLKMSVKRWLWLIIVSVLMFATTG
                     SLLWYQGMKINANMNILREQKESLEKLNAKTWGVRYHEDSNGRFLVLPKGMKAETNWTK
                     DNGKLNAVRLVQE"
                     /name="MbeB family mobilization protein"
     gene            3338..3571
                     /locus_tag="LNS16_22740"
     CDS             3338..3571
                     /locus_tag="LNS16_22740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WGM95000.1"
                     /translation="MTELERHLLNALEQLQQDYMQRLNEWENAFVELQKMFSLTQRDNA
                     MLNGRVMQLSQQVQHLSERTERLSQLYSENRR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            4052..5104
                     /locus_tag="LNS16_22745"
     CDS             4052..5104
                     /locus_tag="LNS16_22745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001557502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WGM95001.1"
                     /translation="MNLQQRINKLPQLSSSFSFGKDIDNIHSFIFNETSKDKIEDLLRK
                     WVSGNQPCVFGKLASKKIKGLDFHLSIVNSPQLYNDDGHLFDFLRNERVRFKERARRGE
                     VSAHLIYFIHPQLAFARPSEELVDIQKYICSLHMPECYPIKEDVIYTESVPFQDKDGLK
                     IYKAGVNVFYSSAHRTRNHDRRIPGGILISVNAPGHFMRLAIEKGFYKDQEQALADIRN
                     MTIQSVGKGGYSHPEGISTTWHSESNLDRFGCPVHTGNSSYYSGFYHTDVLIPGELTKD
                     ERLLHEIENSDPMIFNWNVLFYVSLEEFPIDDPYYGEFIGIPVDDASMFFNSFQPRKFE
                     NKPLYEKEDD"
                     /name="hypothetical protein"
     Typing          1369..1450
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="1.3400000000000002e-35"
     Typing          725..912
                     /name="rep_cluster_2401"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="4.63e-94"
     Typing          2114..3675
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 agcctatcac attattgagc ggacagttga cattctccct tatactgtca tcgctcttta
       61 tttttatatc taaatcatca atttatcttc cgttggaatc cgtgattatt gttttttcat
      121 ctggaatatt acaatatttt ttagcttttt gtttttactt gaactccttg cgttggctcc
      181 cagttcattt ggcagggata atgttgtact ttattccgct agttgcatta tttttgtcat
      241 ggttgttttt ggatgaacaa ttcacattct tacagggggt aggatttatt gtaactgtgc
      301 taagtgtata ttttcttaac agaaaatact cagaggagta acattctgtt caggattgcc
      361 ccccggcctc catcgatacc gtgccaaatg cacgtaaaaa acgggagcgt ttctggtgtc
      421 ggaatgtaac caagggggtc agaggcgcgc taaaacgctc tcaggggagt caaatagaga
      481 cgtttgtaac aaaaagatca aaggatcctc ttgagatcct ttttttctgc gcgtaatctg
      541 ctgcctgtaa acgaaaaaac cgccttgcag ggcggtttga tcgaaggtta agtcagcttg
      601 cagactgctt aaccaggtaa ctgtcttatg cgagacgagt caccaaaatt gttcttctag
      661 tgtagccgca ctccggcagc cacttcaagt actctctaaa tatctcgcac atgactttta
      721 ccaatggctg ctgccagtgg cgctttgtgg tgtcttttcc gggttggacc caagagaaca
      781 gttaccggag aaggcgcagc agtcgggctg aacggggggt tcctgcatac agcccagccc
      841 ggagcgaact gcctaagtcg ccccgagata ccagaagacg tgagctatga gaaagcgcca
      901 cgtgtcccgt aagggagaaa ggcggaaaag gtatccggta atcgatatgg cgggaacgtg
      961 ggggcgcagg agggagcgat tcaccggaaa cggtgatgat ctttaagcca cgtcgggttt
     1021 cgccaccgct ggcggatttc atggttgagc cgcaaggctc ccacagatgc accgaaaaag
     1081 tgtctgtttt gtgaagtccg tcaggggggc ggagcctatg gaaaaagcgc ctccggcgcg
     1141 gcctttcccg gggtttcgtt ttttgcgcac atgttctttc ctggtttatc cccgggttct
     1201 gtggataaca gggttagcgt ttttgagaaa ggagagtccg ctcgccgcag ccgaacgacc
     1261 gagcgtagcg agtcagtgag cgaggaagcg gaagagcgcc tgaactggca ttttctcctt
     1321 acgcatctgt gcggcatttc acaccggaca tggcgcactt ttcatacaat ccgcactgat
     1381 gccgaatggt taagccagta tacactccgc tatcgctacg tgactgggtc agggcttcgc
     1441 cccgacaccc caaaggtcaa cggcctgacg cgccctggcg ggcttgtctg ctcccggcat
     1501 ccgctcacag acaagctgtg accgtctccg ggagctgcat gtgtcagcgg ttttcaccgt
     1561 catccccgaa gcgtgcgagg caactgcggt aaagctcatc ggcgtggtcg tgaagcgatt
     1621 cacagatgtc tgcctgttca tccgcgtcca gttcgttgag cttctccagc agcgttaatg
     1681 tctggcctct gatgaagcgg gccatgttaa gggcggtttt ttcctgtttg gtcactgatg
     1741 cctccgtgta agggggggtt ctgttcatgg gggtaatgat accgatgaaa cgcgagagga
     1801 tgctcacgat acgggttact gatgatgaac atgcccggtt actggaacgc tgtgagggta
     1861 aacaactggc ggtatggatg cggcgggtct gcctgggtga gccggttgcc cgttccggga
     1921 agctgccgac actggcaccg ccgttactgc gtcagctggc cgccatcggg aataacctta
     1981 accagacagc gaggaaggtg aacagcgggc agtggtcttc cggtgaccgg gttcaggtgg
     2041 tggccgcact gatggccatc ggggatgagc tgcgccggct gcgtctggcg gtcagggaac
     2101 agggggcgcg ggatgatagt taagtttcat gccaggggaa aaggtggtgg cagtggtccg
     2161 gttgattacc tgctgggaag ggagcgtaac cgggaagggg caacggtgct tcaggggaat
     2221 ccggaagagg tccgggaact catcgatgcc acgccatttg cgaagaaata cacgtcaggt
     2281 gttctgtcgt tcgcggagaa ggagctgccg cctggagggc gtgaaaaagt gatggcgagc
     2341 tttgagcgtg tactgatgcc cggtctcgag aaaaatcagt acagcatcct gtgggtggag
     2401 caccaggaca agggacggct tgagctgaat tttgtcattc cgaacatgga gctacagacc
     2461 ggaaaacgcc tccagccgta ctacgaccgg gcagacaggc cgagaattga tgcctggcag
     2521 acgctggtga atcaccatta cggtctgcat gaccccaacg ccccggagaa ccgccggacg
     2581 ctgacccttc ctgataacct gccggaaacg aaacaggcgc ttgctgaggg cgtcacacgc
     2641 gggatagacg cgctttacca tgccggagag ataaaaggcc gtcaggatgt gattcaggcg
     2701 ctcacagagg cggggcttga agtggtcagg gtgacgcgaa gcagtatcag cattgcagac
     2761 ccgaacggcg ggaggaatat cagactgaaa ggagcgtttt atgagcaatc ttttacagac
     2821 gggcgcggag ttcgagaaaa agctgaaaga gagagccgaa tctacagaga aaatgctgaa
     2881 cgacgagttc aggaagctcg aagaatctgt aaacagggaa ctgacctcaa acgaatcttt
     2941 aatcaggaac gctatcaacg accatacaac agccctgaaa gaactgctgg agaggtatca
     3001 gaaaacgacc gtcgatacga tggacgcgca ctggaaaacc gtactgaaaa tgagcgtgaa
     3061 acgctggctg tggctgatta tcgtctcagt actgatgttt gccacgaccg ggagtctgct
     3121 gtggtaccag ggcatgaaga taaacgcgaa tatgaatatt ctccgcgagc agaaagagag
     3181 tctggagaag ctgaacgcga agacatgggg cgtgcgttat cacgaggaca gcaacggacg
     3241 ttttctggtg ttgccgaagg ggatgaaagc cgaaacgaac tggacgaagg acaacggcaa
     3301 actgaacgca gtgagactgg tgcaggagtg acagagcatg acggagctgg aaagacattt
     3361 gctgaacgca ttagagcaac tgcaacagga ctatatgcag cggctgaacg aatgggagaa
     3421 cgccttcgtg gaattgcaga aaatgttttc gcttacgcaa cgggacaacg cgatgctgaa
     3481 cgggcgagtc atgcagttga gtcagcaggt gcagcacttg agcgagcgga cagaacgctt
     3541 gagccagtta tacagcgaga acaggagata agggatgaac ggctgatgca ggaacgcgaa
     3601 catgagttat ctctggagcg ggagcgtcag ccggaaatcc aggagcggac actggatggc
     3661 ccttcgctgg gatggtgaaa ccatgaaaaa tgacgtgttc agtggattaa ggcgggctaa
     3721 tgtggcctgt agcatctggt tgcataggta ttcatgcggt taaaatttat caggtgcgat
     3781 cgcggcagtt tttcgggtgg tttgttgcca tttttacctg tctgctgccg tgatcgcacc
     3841 gaacgcgttt tggcggtgcg tacaatgcga cgttatggta aatggagcgg attttcagga
     3901 aggagtgata ctaacaactc gaacactgtg caaataatga tttttttaaa atatcggtaa
     3961 cgataataaa ttatttcgtt ttacgccggt aataaatata atgtagtttc agtatataaa
     4021 aaaatatatg aggtgtcttg tgggagcttt catgaatctt caacaacgta taaataaact
     4081 accacaatta tcatccagtt tttcatttgg aaaagatatt gataatattc attcatttat
     4141 ctttaacgaa acttctaaag ataaaattga agatttacta agaaaatggg tgtcaggcaa
     4201 tcagccctgt gtatttggta aattggcaag caagaaaatt aaagggcttg atttccattt
     4261 atctattgta aatagccccc aactatataa tgatgatggt catttgtttg attttttgcg
     4321 taatgaaaga gttcgtttta aagaacgcgc aagaagagga gaggtcagtg cgcatctcat
     4381 ttattttatt catccacaac ttgcctttgc tcgtccatca gaagagttag tggacataca
     4441 aaaatatatt tgttcgctgc atatgccaga gtgctatcca ataaaagagg atgttattta
     4501 tactgaaagc gtaccatttc aggataaaga tgggctaaaa atatataagg ctggtgttaa
     4561 tgttttttac tcttctgctc atagaacaag aaatcatgat agaagaatac cagggggaat
     4621 acttatttct gtaaatgccc cggggcattt tatgaggctg gcgatagaaa aaggtttcta
     4681 taaagatcaa gaacaagcgt tagcggatat tcgtaacatg actattcagt ctgttggtaa
     4741 gggtgggtat tcacatccgg aagggatttc tacaacatgg cattcagaat ctaatttgga
     4801 tcgttttgga tgcccagtgc acaccggtaa tagttcttat tacagcggtt tttatcatac
     4861 tgatgtatta attccaggag aattaactaa ggatgaaaga ttgctccatg aaatagaaaa
     4921 tagtgatcca atgatcttca actggaatgt attgttttat gtttcattag aagagtttcc
     4981 tatagatgat ccttattatg gagagtttat tggtattcct gtagatgatg catctatgtt
     5041 ttttaactcc tttcaaccaa ggaaatttga aaacaaaccc ctttatgaga aagaggatga
     5101 ttaatatgat taaaggaatg ctttttgctt ttttagcagc gttctcatgg ggggcagcta
     5161 tcgtaatgag caaaaaagga gttgaagaac tagatgccgg aggggtgttt ttctggcaga
     5221 tttgtagtgc agtaatacta tcttggatag ttctttttat aaaaagaaaa aaactcccat
     5281 taaactcaaa agcgatactt gcttatgcga caggcgtttt tgaaccattc ttagcgtata
     5341 cttttacact ctacggactt tattttattt cagcaggaag cgcatcaatt attttttcac
     5401 ttgaatcagt gtttatattg gtgttgtctg ttcttatttg ctcagttaaa attaattccc
     5461 cgcaatattt tatattgttc cttataggtg caattgttgg cagtattttg gtagccttgc
     5521 cagacatcag taatggatcg aataatattg ttggatattg tcttgttgtt gccggtgtgt
     5581 tatcggcagc attttatgtt gttatatcgt ctcgccttat taaatcgttt g
//
