LOCUS       CP119498                2569 bp    DNA     circular BCT 16-MAR-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Schwarzengrund strain
            FSIS1608447 plasmid pFSIS1608447-3, complete sequence.
ACCESSION   CP119498
VERSION     CP119498.1
DBLINK      BioProject: PRJNA242847
            BioSample: SAMN06048856
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Schwarzengrund
  ORGANISM  Salmonella enterica subsp. enterica serovar Schwarzengrund
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2569)
  AUTHORS   Ge,B.
  TITLE     Genomic Analysis of Azithromycin-Resistant Salmonella from Food
            Animals and Retail Meats, 2015-2021, United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2569)
  CONSRTM   GenomeTrakr network: Whole genome sequencing for foodborne pathogen
            traceback
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2018) Center for Food Safety and Applied
            Nutrition, US Food and Drug Administration, 5100 Paint Branch Pkwy,
            College Park, MD, USA
REFERENCE   3  (bases 1 to 2569)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-MAR-2023) CVM/OAS, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 24-SEP-2021
            Assembly Method                   :: HGAP v. 4
            Assembly Name                     :: Microbial assembly
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 246x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/08/2023 12:05:50
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.4
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,151
            CDSs (total)                      :: 5,029
            Genes (coding)                    :: 4,855
            CDSs (with protein)               :: 4,855
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 174
            CDSs (without protein)            :: 174
            Pseudo Genes (ambiguous residues) :: 0 of 174
            Pseudo Genes (frameshifted)       :: 85 of 174
            Pseudo Genes (incomplete)         :: 111 of 174
            Pseudo Genes (internal stop)      :: 34 of 174
            Pseudo Genes (multiple problems)  :: 49 of 174
            Pseudo Genes (short protein)      :: 1 of 174
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2569
                     /organism="Salmonella enterica subsp. enterica serovar
                     Schwarzengrund"
                     /mol_type="genomic DNA"
                     /strain="FSIS1608447"
                     /serovar="Schwarzengrund"
                     /isolation_source="raw intact chicken"
                     /sub_species="enterica"
                     /db_xref="taxon:340190"
                     /plasmid="pFSIS1608447-3"
                     /geo_loc_name="USA:AL"
                     /collection_date="2016"
                     /collected_by="USDA-FSIS"
     gene            327..1292
                     /gene="mobV"
                     /locus_tag="BSL24_25750"
     CDS             327..1292
                     /gene="mobV"
                     /locus_tag="BSL24_25750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001707479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0003677 - DNA binding [Evidence IEA]; GO_process:
                     GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WEN93610.1"
                     /translation="MAFAIMRAKKLNGMGAVAASLQHCYRDRDTPNADQTRTAENEHRA
                     ATSTDEAMGRLRELLPEKRRKDAVLAVEYVMTASPEWWTKATSEQQADFFDQAHKWLAE
                     KYGADRIITATIHRDETSPHLSAFVVPLTADGRLSAKDFIGNRAKMTADQTSFAKAVQH
                     LGLERGIERSRATHTSIKQHYAAIEKGTKGEVTITPEAVQPRVLKKGLFSRQEETPEAV
                     AARLTDAINKGHAGTVANAAVSAQNARRAREMQKTMVDQQKKLKTLQEPFKGLSREQVA
                     EVIKMATTMQRENEAAKAAKLQRQKEQRQQRRSQDRGFSR"
                     /name="mobV"
     gene            complement(1294..1935)
                     /locus_tag="BSL24_25755"
     CDS             complement(1294..1935)
                     /locus_tag="BSL24_25755"
                     /inference="COORDINATES: protein motif:HMM:NF017542.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_process:
                     GO:0006260 - DNA replication [Evidence IEA]; GO_process:
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WEN93609.1"
                     /translation="MNKQNIHISPEAQARVRQQELAEQDEAAKRAKKNYNFVQIEKRAL
                     RLVRELYEANPAAGKLLFILAEKMNRQNALVCSYDTMSKITGLGRTTLYKAVKYLKEHN
                     WVEVIKVGTANAYVINSRVFWQSHGDKKLTVFHATIVASSDEQDTPVEDWDKVKLNHFP
                     FLSHDDDVTVTNEQLPPPDQEELDFHKTPEPCFLDGDEPVEPPTHITLPK"
                     /name="replication/maintenance protein RepL"
     Typing          328..902
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="93.75"
                     /coverage="98.0"
                     /evalue="1.01e-127"
ORIGIN
        1 gccgcgaaag tcccttgatg cccttggagt gacccacgct cccgtctggg gtttgggttg
       61 tgcaggccga aggccggaac tgcccacacc cctgacgaca gagggcgact cgttcccccc
      121 agcggggggc ggagggggga gaatgcaacg agtgaaacga ggcgcagggc gatagcccga
      181 agagcaagcc gcaggcgctg caacccgctt gcgggtcacg attttacgaa gtaaagtcta
      241 gtgagtactc tttgactcca aagaggcccg ccggaggcac tgcgttttcc gtcgggatgg
      301 caccagcaca gaccgagggg gaacgcatgg cttttgcgat catgagagcg aaaaagctca
      361 acggcatggg ggctgtcgcg gcctcgttgc agcactgcta ccgagaccga gacacgccca
      421 atgccgacca gacgcgaacg gcagaaaacg aacacagagc cgccacatca accgatgagg
      481 caatggggcg cttgcgtgag ttgctgccag agaagcggcg caaagatgcg gtgctggcgg
      541 ttgagtacgt catgacggca tcgcccgaat ggtggacgaa agccaccagc gaacagcagg
      601 cggatttctt cgaccaggca cacaagtggc tggccgaaaa atacggcgct gaccgcatca
      661 tcacggccac cattcaccgc gacgagacca gcccacacct aagcgcgttt gtggtgccgt
      721 tgaccgctga cggacgtttg agcgccaagg atttcattgg caacagggcg aaaatgacgg
      781 ctgaccagac cagctttgcc aaagctgtgc agcacctagg gcttgaaagg ggcatcgagc
      841 gcagcagggc aacgcatacc agcatcaagc agcattacgc cgccatcgaa aagggcacca
      901 aaggggaagt gaccatcacc cccgaagccg tccagccaag ggtgttgaag aaggggcttt
      961 tcagtcgtca ggaagaaacc ccagaagctg tagcagctcg tttaaccgat gcaatcaaca
     1021 aaggtcatgc gggaacggtt gcaaatgccg ctgtaagcgc ccagaacgct cgtagagcgc
     1081 gagaaatgca aaagacaatg gttgaccagc agaagaagct aaaaacgctt caggagccgt
     1141 ttaaggggct ttcacgcgaa caggtagcgg aggtcatcaa gatggccaca accatgcaac
     1201 gggaaaacga agcggccaag gccgcgaagt tgcaacgcca aaaggaacag cgacagcagc
     1261 gacgcagcca agacaggggg tttagcagat aaatcacttg ggcagcgtga tgtgagttgg
     1321 cggctcgacg ggctcgtcac cgtctaagaa acacggctct ggtgtcttgt gaaagtccaa
     1381 ttcctcttgg tctggcggcg gtagctgctc gtttgtcacg gtgacgtcat cgtcgtgact
     1441 gaggaacggg aaatggttca atttcacctt gtcccagtcc tctacggggg tgtcttgttc
     1501 gtcgcttgat gccacgatag tagcgtggaa gaccgttagt tttttatcgc cgtgagactg
     1561 ccagaacacg cgggaattga tgacataagc gttagctgta cccaccttaa tgacttcaac
     1621 ccaattgtgt tctttgaggt atttcacggc cttgtagagc gttgttctgc ctagtcctgt
     1681 gatctttgac atggtgtcat agctgcaaac caaagcgttt tgtctgttca ttttttcggc
     1741 cagtatgaac agcaatttgc cagctgctgg gttggcttcg tacagctcac gaacaagccg
     1801 caaggctcgt ttttcaatct gcacgaagtt gtaattcttc ttcgctcgct tagctgcttc
     1861 gtcttgttct gcaagctctt gttgccttac acgggcttgc gcctcggggc ttatgtgtat
     1921 gttctgttta ttcatagcat acgttccatt tgctgaatca attgttcacc tataggcaca
     1981 caatacgttc acttttaatg aacgtcaagt gccaccaaag tgatatatgt tcactctagg
     2041 ggtgaacata tatgttcgcc ctaggggtga acataaggaa acaggctcaa agccaataac
     2101 gacaagggtt taagactgtt tttagtagtt gtcccctctc tatctcatag ggggcgttgc
     2161 cccctgccgc acttcgtttg gctaaccccc ctgtcgcttc gctcctgaaa atgcctgccc
     2221 tgcgggcaga aggcttttgt tacttgcagc ggcctacggc ctcgctctaa gggggcgttg
     2281 ccccctagcg cgcttcgctt gcctccccca cgttcgccac gtggcagggg ggcaggacgg
     2341 gcggcctacg gcctacttac ctgcccccca tgcctaagcg tgtggtcgtt ccagcagcgt
     2401 caagggtacg gcttcgccca cgtactcacc cgttcggtgc tcgccttcgg ctgcgctccg
     2461 cgtgcggctt ccgtgcgtgc ccttgacacc gcttccactc aaatggaacc gaacggaaag
     2521 ggggtcaagg gaaccgtgga ataccgcagc cccaacgggg cgaggatat
//
