LOCUS       CP119494                3855 bp    DNA     circular BCT 16-MAR-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Schwarzengrund strain
            FSIS1609433 plasmid pFSIS1609433-3, complete sequence.
ACCESSION   CP119494
VERSION     CP119494.1
DBLINK      BioProject: PRJNA242847
            BioSample: SAMN06256178
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Schwarzengrund
  ORGANISM  Salmonella enterica subsp. enterica serovar Schwarzengrund
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3855)
  AUTHORS   Ge,B.
  TITLE     Genomic Analysis of Azithromycin-Resistant Salmonella from Food
            Animals and Retail Meats, 2015-2021, United States
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3855)
  CONSRTM   GenomeTrakr network: Whole genome sequencing for foodborne pathogen
            traceback
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUL-2018) Center for Food Safety and Applied
            Nutrition, US Food and Drug Administration, 5100 Paint Branch Pkwy,
            College Park, MD, USA
REFERENCE   3  (bases 1 to 3855)
  AUTHORS   Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-MAR-2023) CVM/OAS, FDA-CVM, 8401 Muirkirk Rd, MOD2,
            Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 24-SEP-2021
            Assembly Method                   :: HGAP v. 4
            Assembly Name                     :: Microbial assembly
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 287x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/08/2023 12:02:24
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.4
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,177
            CDSs (total)                      :: 5,055
            Genes (coding)                    :: 4,880
            CDSs (with protein)               :: 4,880
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 175
            CDSs (without protein)            :: 175
            Pseudo Genes (ambiguous residues) :: 0 of 175
            Pseudo Genes (frameshifted)       :: 83 of 175
            Pseudo Genes (incomplete)         :: 116 of 175
            Pseudo Genes (internal stop)      :: 31 of 175
            Pseudo Genes (multiple problems)  :: 49 of 175
            Pseudo Genes (short protein)      :: 1 of 175
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3855
                     /organism="Salmonella enterica subsp. enterica serovar
                     Schwarzengrund"
                     /mol_type="genomic DNA"
                     /strain="FSIS1609433"
                     /serovar="Schwarzengrund"
                     /isolation_source="comminuted chicken"
                     /sub_species="enterica"
                     /db_xref="taxon:340190"
                     /plasmid="pFSIS1609433-3"
                     /geo_loc_name="USA:GA"
                     /collection_date="2016"
                     /collected_by="USDA-FSIS"
     gene            complement(451..1719)
                     /locus_tag="BZE21_025875"
     CDS             complement(451..1719)
                     /locus_tag="BZE21_025875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000179383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WEN98489.1"
                     /translation="MASYHCTVKAGAKGSALKHADYISRSGEYKSYKSREDLEFSSSGN
                     MPSWAKKNPAELWKAADEFERKNGTAYREIEIALPRELTREQRIELVEDFVQKELGDRH
                     AYQYAIHNPPGAIDGKEQPHAHIMFCERINDGIERDPQQFFKRANSKSPERGGAKKASI
                     PQTAGERKAALVALRSRWADVQNEHLARYGHESRVDHRSLKEQGINRTPEVHLGPVQAA
                     SLNGEQIVAIQERRNAERELKTARDAANAIQQEQEQKQKIKAVEPVRSARSPELLLQYR
                     KVMKTVIQGEARLARLGDANPNALKEHKLLQNAKAKKDSLSEWSRRIYEGARYLDKLGR
                     NVVSAQRELRELQEQGRLMRVFWSKKVCWKPLNMKGMNSGTSYSKLNPSGTKKTLLLSV
                     PRDISTLGIWTGTENVRFWPRHL"
                     /name="MobA/MobL family protein"
     gene            1891..2337
                     /locus_tag="BZE21_025880"
     CDS             1891..2337
                     /locus_tag="BZE21_025880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000184721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="WEN98490.1"
                     /translation="MTNREEWLSAKIAYINGLKSPSEQQRLLVLLAEKKNRTTTDEKTL
                     SALIRAEKTAEKAAAAKARVTAIIAAERKAAARAERKARDHELYKAAGLMIVAGLVDSK
                     TGKPKFSAAELVGALAGIAELPRNHPKWQEWERRGKELLTKDSA"
                     /name="conjugal transfer protein TraD"
     gene            complement(2598..3617)
                     /locus_tag="BZE21_025885"
     CDS             complement(2598..3617)
                     /locus_tag="BZE21_025885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001271373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WEN98488.1"
                     /translation="MSAALQYFEENLPHRPYHTNDLAFGLRISGKGRALLARYIQQNQP
                     HAQFWLVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNIAVRTAPDSSVKA
                     LKYAAAIERSLCEKLCADVNYSGLICKNPFHLEWQVMEWREEAYTLDELADYLDLSASE
                     RRSIDKHYGMGRNCHLFEMTRKWAYRAIRQGWPAFSQWLDAVIQRVEMYNASLPVPLSP
                     PECRAIGKSIAKYTHRNFTPETFAQYVADTHTPEIQAARGRKGGKANSSENQSDKGKKS
                     AAVRWTANDDKRRRALDMYILGASTEDIAVAVGVSSRTIRRWMDNSGEWLTKKQIIKF"
                     /name="replication initiation protein"
     Typing          complement(2843..3617)
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="97.426"
                     /coverage="83.0"
                     /evalue="0.0"
     Typing          complement(222..655)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.034"
                     /coverage="97.0"
                     /evalue="0.0"
     Typing          complement(656..1719)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.183"
                     /coverage="97.0"
                     /evalue="0.0"
ORIGIN
        1 caccaggctg aaccagaaaa atgcgtcaga atcgttttta gggcgctgca taactatgca
       61 cgaaagcgat gcgcgatcgg tttcgagcgt tcagaagggc gaacgggtca aaacagcaaa
      121 ctttctcatc agaaaacggt gaacgggacg cggaattttt tcgcgttccg tgaaacgttg
      181 gcggggttcg gggcgcagtc ccgatattgc tacattttca acgctccata tcttgatcac
      241 gtgcgttact acgtgatgcc tccctggccc aggatcgctg tatacgcagt gccttttcct
      301 cctgttgctg ccgttcctgc gccatttctg ccagtaactc atgtcgcatt tgagcttttt
      361 catctccaga tatactgagt tcaggctcca gagataacat ctggctacgg gcaacggata
      421 cttcttcagc aaccttttgc ctggtattct ctaaagatgc cgcggccaga atctcacgtt
      481 ctctgtacct gtccagatcc ccaacgtact tatatccctc ggtacgctta aaagcagcgt
      541 tttctttgtc ccactcggat tcagcttgct gtagcttgtt cctgaattca ttcctttcat
      601 gttcagcggt ttccagcaca cttttttgct ccagaatacg cgcatcaatc tcccttgttc
      661 ctgtagctcc cgcagctccc tttgtgcgga aacgacatta cgccccagtt tgtctaaata
      721 ccgtgctcct tcatatattc gcctgctcca ttcggaaaga gagtcttttt ttgctttcgc
      781 attctgaagc agcttatgtt ctttgagcgc attgggattg gcatccccta aacgagcaag
      841 ccttgcttct ccctgaatga ccgttttcat aaccttgcgg tactgaagca ataactccgg
      901 tgaacgggct gaacgaacag gctcaactgc cttgattttt tgcttttgct cctgttcctg
      961 ctgaatggca tttgcggcat ctctggcggt cttgagttcc cgctcagcat tcctccgttc
     1021 ctggattgca acaatctgct caccattgag actggcggcc tgaacggggc caagatgaac
     1081 ttccggcgtg cgattgatac cctgttcttt cagagaacga tgatctacgc gcgactcgtg
     1141 accgtatcgc gcaaggtgct cattctgcac atctgcccag cgggaacgca gcgcaacaag
     1201 ggcggctttt cgctctccgg ctgtctgggg aatactcgct ttttttgcgc ctccccgttc
     1261 tggtgatttg ctgttggcac gtttaaaaaa ttgctgcgga tcgcgttcaa taccatcatt
     1321 aatccgctcg caaaacatga tatgcgcgtg tggctgttcc tttccgtcga ttgcacctgg
     1381 cggattgtgg atcgcgtact ggtaggcatg gcgatcgcca agttcctttt gcacgaaatc
     1441 ttcaacaagt tctatccgtt gttcgcgtgt cagttcacgc ggtaacgcga tctcaatttc
     1501 acggtacgca gtcccgtttt ttcgttcaaa ttcatctgcg gctttccata gctctgcggg
     1561 atttttcttc gcccatgatg gcatgttacc ggatgacgaa aattccagat cctcccgcga
     1621 tttgtagctc ttatattcgc cggatctgga aatgtaatca gcatgtttta aggcactgcc
     1681 ttttgctcca gctttgacgg tgcaatggta gcttgccatc tgccttttag ccctccgcag
     1741 gagcgcacag tttctcgacg aaggagagaa actactaagt gcgcatccct gaattaatca
     1801 gggatgattt tacggtctca cacgcaggca gacaaggtga tattatgcac aataacaact
     1861 cacattaacg gcaaaagtgc agaggtaaga atgacaaatc gtgaagagtg gttaagtgca
     1921 aaaattgcct acatcaacgg actgaaatca ccgtcagagc agcagagatt acttgtgtta
     1981 ctggcagaga aaaaaaaccg aacaacgacg gatgaaaaaa cgttgtccgc actgatacgg
     2041 gcagaaaaaa ccgcagagaa agcagccgca gcaaaagcca gggtaacggc aatcatagcg
     2101 gcagaacgga aggcagccgc aagggcggaa cgaaaggcgc gggatcatga actctacaag
     2161 gccgcaggcc tcatgattgt ggcaggactg gtggacagca aaaccggaaa accaaagttt
     2221 agtgctgccg aactggtagg cgcactcgca ggaatcgcag agctaccgcg caaccatcca
     2281 aaatggcagg aatgggaaag acgcgggaag gagctactaa ccaaagacag tgcgtaagag
     2341 cctccgttca cgttccggtt ccctggtgct tcctcgctca ttcgctcgct acgctcggtc
     2401 atgagactgc ggcgagcaca accacctcaa tcatgcggta agccgcacca ttgctgggct
     2461 gacaggagaa aaccgccgga aagcccgctg ctcaaaaaga cgccgaaagg cgctgttatc
     2521 tgatataggc ttgttcatgt ccgcgaattt aaccatccat taacaaaaac agggggtaat
     2581 tgtcattttt ctgttaatta aaatttaatt atttgtttct tggttaacca ttctccagaa
     2641 ttatccatcc agcgtcgaat agtccggctg ctaacaccaa ccgccactgc aatatcttcc
     2701 gttgacgctc ccaagatata catatcaagc gccctacgac gtttgtcgtc gttagcagtc
     2761 caccgaacag cggcgctttt tttccctttg tccgactgat tttctgacga attggccttc
     2821 ccgcccttgc gaccgcgtgc tgcctgaatt tctggcgtgt gcgtatcagc cacatactgt
     2881 gcgaaagttt ccggcgtgaa gttcctgtgc gtgtatttcg caatgctctt gccaatagcc
     2941 cgacattcag gcggagaaag cggaacggga agcgatgcgt tgtacatttc gacacgctga
     3001 atcacggcat caagccactg tgagaatgct ggccagccct gacgaatcgc cctgtaagcc
     3061 catttgcgcg tcatttcaaa caggtggcag tttcgcccca tcccgtaatg tttatcgatg
     3121 ctacgacgct ctgaggcgct caaatcgaga taatctgcca gttcatcgag ggtataggct
     3181 tcctcgcgcc actccatcac ctgccattcc aggtggaacg gatttttgca aatcagtccg
     3241 ctgtagttca catcagcaca aagtttctca cacagcgaac gttcaatcgc ggcggcatat
     3301 ttcagcgcct taaccgagct gtccggcgcg gttctcacgg cgatattgag tgcgtagagc
     3361 aggtgagcat gaccgttcac aggatttttt acggtgatgt tcggcgcggg ggcgttccgg
     3421 tcgctccagt caatcgcggc cccctcgcgg tcaacgtcaa aaaccagcca gaactgcgca
     3481 tgaggctggt tctgctggat gtaccgcgca agaagcgcac gccctttgcc ggagatgcga
     3541 agaccaaaag cgagatcatt cgtgtgatag ggacggtggg gtaaattttc ttcgaagtat
     3601 tgaagcgcgg cgctcatgtg ttacgattcc ttccaggtta tcgaccgaca tcgcccctgt
     3661 attttcgtga caatcttggc ggagagacac gaatttcagg ggcgtttgtt tttcagtcgc
     3721 ttacactacc cccaacgaca aaacctgtcg agccttcccg caaaaccgat ccatttacca
     3781 taactcccgt tgtacgtacc ccataaaacg ccctcaatcg ctttctgacg caaaaaacgc
     3841 aaaaagacaa ggaaa
//
