LOCUS       CP118828                4706 bp    DNA     linear   BCT 15-MAY-2023
DEFINITION  Staphylococcus hominis strain 7056 plasmid pML7056-3.
ACCESSION   CP118828
VERSION     CP118828.1
DBLINK      BioProject: PRJNA937407
            BioSample: SAMN33407035
KEYWORDS    .
SOURCE      Staphylococcus hominis
  ORGANISM  Staphylococcus hominis
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 4706)
  AUTHORS   Belhout,C., Boyen,F., Vereecke,N., Theuns,S., Taibi,N., Stegger,M.,
            de la Fe-Rodriguez,P.Y., Bouayad,L., Elgroud,R. and Butaye,P.
  TITLE     Prevalence and Molecular Characterization of Methicillin-Resistant
            Staphylococci (MRS) and Mammaliicocci (MRM) in Dromedary Camels from
            Algeria: First Detection of SCCmec-mecC Hybrid in
            Methicillin-Resistant Mammaliicoccus lentus
  JOURNAL   Antibiotics (Basel) 12 (4), 674 (2023)
   PUBMED   37107036
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4706)
  AUTHORS   Belhout,C., Stegger,M., Vereecke,N., Elgroud,R. and Butaye,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2023) Department of Pathobiology, Pharmacology and
            Zoological Medicine, Universiteit Gent, Salisburylaan 133, Merelbeke
            9820, Belgium
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: Trycycler; minimap2; medaka v. v0.5.3; v2.20;
            v1.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 270x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 02/27/2023 12:51:18
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.4
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,264
            CDSs (total)                      :: 2,180
            Genes (coding)                    :: 1,982
            CDSs (with protein)               :: 1,982
            Genes (RNA)                       :: 84
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 198
            CDSs (without protein)            :: 198
            Pseudo Genes (ambiguous residues) :: 0 of 198
            Pseudo Genes (frameshifted)       :: 165 of 198
            Pseudo Genes (incomplete)         :: 33 of 198
            Pseudo Genes (internal stop)      :: 11 of 198
            Pseudo Genes (multiple problems)  :: 11 of 198
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4706
                     /organism="Staphylococcus hominis"
                     /mol_type="genomic DNA"
                     /strain="7056"
                     /isolation_source="Nose"
                     /host="Camelus dromedarius"
                     /db_xref="taxon:1290"
                     /plasmid="pML7056-3"
                     /geo_loc_name="Algeria: Ouargla"
                     /collection_date="2022-06-06"
     gene            <1..936
                     /locus_tag="PYH62_11315"
     CDS             <1..936
                     /locus_tag="PYH62_11315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002440612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0003677 - DNA binding [Evidence IEA]; GO_function:
                     GO:0003916 - DNA topoisomerase activity [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="WHI80300.1"
                     /translation="MSRENYSKYLQNKDSDILHSTGYSNSRLGGNFCTTPQPELNFDAM
                     TIVGNLNKNNAQKLSEFMSTEPQIRLWDILQTKFKAKALQEKVYIEYDKVKADTWDRRN
                     MRVEFNPNKLTHEEMIWLKQNIIDYMEDDGFTRLDLAFDFEDDLSDYYVMSDKALKKTV
                     FYGINGMPETKYFGVRDSDRFIRIYNKKQERKDNADVEVTSDHLWRVEIELKRDMVDYW
                     NDCFEDLHILKPDWTTLEKLKDQAMIYMLIHEEGVWGKLERHAKYKYKKLIKEISPVDL
                     TELMKSTLRENEKQLQKKIEFWQTKSKKLF"
                     /name="replication initiation factor domain-containing
                     protein"
     gene            2353..3288
                     /locus_tag="PYH62_11320"
     CDS             2353..3288
                     /locus_tag="PYH62_11320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002440612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0003677 - DNA binding [Evidence IEA]; GO_function:
                     GO:0003916 - DNA topoisomerase activity [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="WHI80301.1"
                     /translation="MSRENYSKYLQNKDSDILHSTGYSNSRLGGNFCTTPQPELNFDAM
                     TIVGNLNKNNAQKLSEFMSTEPQIRLWDILQTKFKAKALQEKVYIEYDKVKADTWDRRN
                     MRVEFNPNKLTHEEMIWLKQNIIDYMEDDGFTRLDLAFDFEDDLSDYYVMSDKALKKTV
                     FYGINGMPETKYFGVRDSDRFIRIYNKKQERKDNADVEVTSDHLWRVEIELKRDMVDYW
                     NDCFEDLHILKPDWTTLEKLKDQAMIYMLIHEEGVWGKLERHAKYKYKKLIKEISPVDL
                     TELMKSTLRENEKQLQKKIEFWQTKSKKLF"
                     /name="replication initiation factor domain-containing
                     protein"
     Typing          2..911
                     /name="rep_cluster_1118"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="87.281"
                     /coverage="97.0"
                     /evalue="0.0"
     Typing          2354..3263
                     /name="rep_cluster_1118"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="87.281"
                     /coverage="97.0"
                     /evalue="0.0"
ORIGIN
        1 atgagtagag aaaattattc aaagtactta caaaataagg atagtgacat tttacactca
       61 accggctact ctaatagccg gttaggtggt aatttttgta ccacccctca gccagaatta
      121 aattttgatg ccatgactat tgttggaaat cttaataaaa ataatgctca aaagctatct
      181 gaattcatga gtactgaacc acaaattaga ctttgggata tactacaaac gaaatttaaa
      241 gctaaagcgc tgcaggaaaa agtttatatc gaatacgaca aagtaaaagc agatacatgg
      301 gatagacgta atatgcgtgt tgaatttaat ccaaataaac ttacacatga agaaatgatt
      361 tggttaaaac aaaacatcat cgactatatg gaagatgacg gtttcacaag attagactta
      421 gcctttgatt ttgaagatga tttaagcgac tactatgtaa tgtcagataa agctttgaag
      481 aagactgtat tctatggaat taatggaatg ccagaaacaa aatattttgg cgttcgtgat
      541 agcgatagat ttattagaat ttataacaaa aaacaagaac gtaaagataa cgcagatgtt
      601 gaagttacgt ctgatcactt atggcgtgta gaaattgaac ttaaaagaga tatggttgat
      661 tattggaacg attgttttga agatttacat attttaaaac ctgattggac tacactagaa
      721 aaattaaaag accaagctat gatttatatg ttaattcatg aagaaggcgt atggggaaaa
      781 cttgaaaggc atgctaaata taaatataag aaattaatca aagaaatatc tccagttgat
      841 ttgacggaat taatgaaatc gactttaaga gaaaatgaaa aacaattgca aaagaaaata
      901 gaattttggc agacaaaaag taagaagcta ttttaaaaat ggctaccatt cggctccttt
      961 tagctcccaa atggctacat aaaaagggag ccatttggga gtcatttttt gattttatgt
     1021 agccatttgg gagacatttt tgattttggg tagctattcg gtagcttttg tgtagccctt
     1081 caggagtcat ataacaattt ttatcgcata aaaggaatcc catttgacac tgtcaaatca
     1141 atattttgaa cagaaatggc taccgaatgg agacatttgg agacatttct gttcaggatt
     1201 cctcttatgc tctttaaaat atttaaaata caagagttac attatacacc tattttttaa
     1261 ggctttagct ttttattaag aagaataacc gagatagaaa aacatatttc gtattctaaa
     1321 agatttagaa aatgaatttt aaaatgattt atcgtctctc tgttgaacga aaaaagtttt
     1381 tagttatttt tatacgtgga atgattaaat gtcctagaaa gggcttaaaa tgcaaaataa
     1441 aaagactact cattttttga gtagccaggg aatagttttt gatatattaa atgaaaagga
     1501 gtaatacatt aatcgtatca cacgcattta tgccgagaaa atttattgag gttgagaaga
     1561 acccttaact aaacttggag acgaatgtcg gcatagcgtg agctattaag ccgacgattc
     1621 gacaagttta gggattgtta agggttccga ggctcaacgt caataaagca attggaataa
     1681 agcattaaaa aatagccact caatttgtga gtagctattt ttgggcgaag atcacttcac
     1741 attaaaagac taaaactaaa tgtgaatgag gataatgcta tatttttact ttaacactta
     1801 tttattttca tctcatccaa aaccattaaa aatagtcact caattattga gtgactatgg
     1861 gttggtagaa gaactatttc atgttaaaag aattaatgat attcgagaat tatattttca
     1921 ctttaacatt tatttaatca tagtgcattc aaaagtattt aacgatgaga ttttttggct
     1981 tttttgaaac gagtttcttc ttgtcttgat actatataga aataactcaa tttttgaatt
     2041 aaggctttaa accttgtcat taaaggcctt aagcgatttt tttatgttga aaagaaaatt
     2101 tgacataggt ttataaacac caaaaagctt ggtcataata gaccaagctt tttggtagtg
     2161 ttatattaat aacaaaataa aaagaagtcg ctcacgccct gaccaaagtt tgtgaatgcg
     2221 acttacccaa ggaaaaacat taagttgttt tttatatttt gtatatctag atattaaacg
     2281 atattagttt tttcttcaag atatatattc gggtgagcga cttcttaaaa caaattaagg
     2341 agtcgatttt ttatgagtag agaaaattat tcaaagtact tacaaaataa ggatagtgac
     2401 attttacact caaccggcta ctctaatagc cggttaggtg gtaatttttg taccacccct
     2461 cagccagaat taaattttga tgccatgact attgttggaa atcttaataa aaataatgct
     2521 caaaagctat ctgaattcat gagtactgaa ccacaaatta gactttggga tatactacaa
     2581 acgaaattta aagctaaagc gctgcaggaa aaagtttata tcgaatacga caaagtaaaa
     2641 gcagatacat gggatagacg taatatgcgt gttgaattta atccaaataa acttacacat
     2701 gaagaaatga tttggttaaa acaaaacatc atcgactata tggaagatga cggtttcaca
     2761 agattagact tagcctttga ttttgaagat gatttaagcg actactatgt aatgtcagat
     2821 aaagctttga agaagactgt attctatgga attaatggaa tgccagaaac aaaatatttt
     2881 ggcgttcgtg atagcgatag atttattaga atttataaca aaaaacaaga acgtaaagat
     2941 aacgcagatg ttgaagttac gtctgatcac ttatggcgtg tagaaattga acttaaaaga
     3001 gatatggttg attattggaa cgattgtttt gaagatttac atattttaaa acctgattgg
     3061 actacactag aaaaattaaa agaccaagct atgatttata tgttaattca tgaagaaggc
     3121 gtatggggaa aacttgaaag gcatgctaaa tataaatata agaaattaat caaagaaata
     3181 tctccagttg atttgacgga attaatgaaa tcgactttaa gagaaaatga aaaacaattg
     3241 caaaagaaaa tagaattttg gcagacaaaa agtaagaagc tattttaaaa atggctacca
     3301 ttcggctccc ttttagctcc caaatggcta cataaaaagg gagccatttg ggagtcattt
     3361 tttgatttta tgtagccatt tgggagacat ttttgatttt gggtagctat tcggtagctt
     3421 ttgtgtagcc cttcaggagt catataacaa tttttatcgc ataaaaagga atcccatttg
     3481 acactgtcaa atcaatattt tgaacagaaa tggctaccga atggagacat ttggagacat
     3541 ttctgttcag gattcctctt atgctcttta aaatatttaa aatacaagag ttacattata
     3601 cacctatttt ttaaggcttt agctttttat taagaagaat aaccgagata gaaaaacata
     3661 tttcgtattc taaaagattt agaaaatgaa ttttaaaatg atttatcgtc tctctgttga
     3721 acgaaaaaag tttttagtta tttttatacg tggaatgatt aaatgtccta gaaagggctt
     3781 aaaatgcaaa ataaaaagac tactcatttt ttgagtagcc agggaatagt ttttgatata
     3841 ttaaatgaaa aggagtaata cattaatcgt atcacacgca tttatgccga gaaaatttat
     3901 tgaggttgag aagaaccctt aactaaactt ggagacgaat gtcggcatag cgtgagctat
     3961 taagccgacg attcgacaag tttagggatt gttaagggtt ccgaggctca acgtcaataa
     4021 agcaattgga ataaagcatt aaaaaatagc cactcaattt gtgagtagct atttttgggc
     4081 gaagatcact tcacattaaa agactaaaac taaatgtgaa tgaggataat gctatatttt
     4141 tactttaaca cttatttatt ttcatctcat ccaaaaccat taaaaatagt cactcaatta
     4201 ttgagtgact atgggttggt agaagaacta tttcatgtta aaagaattaa tgatattcga
     4261 gaattatatt ttcactttaa catttattta atcatagtgc attcaaaagt atttaacgat
     4321 gagatttttt ggcttttttg aaacgagttt cttcttgtct tgatactata tagaaataac
     4381 tcaatttttg aattaaggct ttaaaccttg tcattaaagg ccttaagcga tttttttatg
     4441 ttgaaaagaa aatttgacat aggtttataa acaccaaaaa gcttggtcat aatagaccaa
     4501 gctttttggt agtgttatat taataacaaa ataaaaagaa gtcgctcacg ccctgaccaa
     4561 agtttgtgaa tgcgacttac ccaaggaaaa acattaagtt gttttttata ttttgtatat
     4621 ctagatatta aacgatatta gttttttctt caagatatat attcgggtga gcgacttctt
     4681 aaaacaaatt aaggagtcga tttttt
//
