LOCUS       CP116022                2206 bp    DNA     circular BCT 24-JAN-2023
DEFINITION  Salmonella enterica strain SSJHZ21-044 plasmid pJHZ21-2K, complete
            sequence.
ACCESSION   CP116022
VERSION     CP116022.1
DBLINK      BioProject: PRJNA861707
            BioSample: SAMN29924137
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2206)
  AUTHORS   Ni,J., Yang,H., Pan,D. and Tang,B.
  TITLE     Emergence of the plasmid harboring multi-drug resistance gene cfr in
            porcine Salmonella
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2206)
  AUTHORS   Tang,B., Siddique,A. and Yue,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JUL-2022) Institute of Agro-product Safety and
            Nutrition, Zhejiang Academy of Agricultural Sciences, 198 Shiqiao
            Road, Hangzhou, Zhejiang 310021, China
REFERENCE   3  (bases 1 to 2206)
  AUTHORS   Ni,J., Yang,H., Pan,D. and Tang,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JAN-2023) Institute of Agro-product Safety and
            Nutrition, Zhejiang Academy of Agricultural Sciences, 198 Shiqiao
            Road, Hangzhou, Zhejiang 310021, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. NOV-2022
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology             :: Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/18/2023 08:42:51
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.4
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,760
            CDSs (total)                      :: 4,644
            Genes (coding)                    :: 4,517
            CDSs (with protein)               :: 4,517
            Genes (RNA)                       :: 116
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 127
            CDSs (without protein)            :: 127
            Pseudo Genes (ambiguous residues) :: 0 of 127
            Pseudo Genes (frameshifted)       :: 47 of 127
            Pseudo Genes (incomplete)         :: 92 of 127
            Pseudo Genes (internal stop)      :: 21 of 127
            Pseudo Genes (multiple problems)  :: 31 of 127
            Pseudo Genes (short protein)      :: 1 of 127
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2206
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="SSJHZ21-044"
                     /isolation_source="pig"
                     /db_xref="taxon:28901"
                     /plasmid="pJHZ21-2K"
                     /geo_loc_name="China:Zhejiang"
                     /collection_date="2021"
     gene            494..928
                     /locus_tag="NSP22_023795"
     CDS             494..928
                     /locus_tag="NSP22_023795"
                     /inference="COORDINATES: protein motif:HMM:NF017542.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WCA52137.1"
                     /translation="MSNRITQIDTATGEEVGSFVAVIRPKQKSAFERHFTMNQDALKIL
                     AKTLTGEQFKVLMMLLADLDYENYIQIAQADIADALGMQKTNVSRSVKALIDLSVILQG
                     PKVGRSYSYRLNPQFGWKGTVSNHKKALKNGLSVIQGGRT"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(990..1982)
                     /locus_tag="NSP22_023800"
     CDS             complement(990..1982)
                     /locus_tag="NSP22_023800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001707479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid recombination protein"
                     /protein_id="WCA52138.1"
                     /translation="MRSPDWPDGRRNEGVSMANYAIMRCKKLTGMGSVASALQHCYRER
                     ETPNADAERTPENYCSVSQSADEAMGKLRELLPEKRRKDAVLAVEYVMTASPEWWNEAT
                     PRQQAEFFARSEQWLEKKYGKDRVVAAVVHRDEATPHLSAFVVPLTQDGRLSAKEFIGG
                     RSKMREDQSTYAESVKKLGLERGIEGSRATHQTVQHYYESINRGTRSQVSISPEALEPR
                     VLRKGIFTKDVEDQAAIAKRLSHAVNDGFAGTIAMASQSAQNAKRARELQKTMDAQQKR
                     LQSVTEPFKGLSREQMTEILMMAQRFKQQNQEKEKQRQTRSRGMGGMER"
                     /name="plasmid recombination protein"
     Typing          complement(994..1982)
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.308"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ctggatatcg cttttgaaag agcaggaacc gctcgccgca gatcggatta gggagcggca
       61 acgccgcgag tctgtccgat cgaggaagcg gaatttccac tccccggaca tagaaatccg
      121 tacgctccag actcaaaaaa gctcgttttt cgatgtttaa aaatggcgtt tttcagcctt
      181 tatttccccc cttaatatat agatatagat acgggaaccc gcgcacacca agggctagag
      241 agaagaatcg tactcacctc aagtactaat cgtactcacc tcaagtacta atcgtactca
      301 cctcaagtac taatcgtact catctcaagt actaatcgta ctttaggtat ggcactcgct
      361 acgctcgcta taagatacag aagagagcct tctctcagcc cttgtggggc gcggctctcg
      421 cttgacgata gttatcatta ttgataacgt tgttatcatt attgataact atttttttgg
      481 gagagcctct taaatgagta accgaattac tcagatagac actgctacag gggaagaggt
      541 aggtagtttt gtcgcagtta tccgacccaa acagaagtca gcttttgaga ggcatttcac
      601 tatgaaccaa gacgctttaa agatccttgc taagaccctc acaggggagc aattcaaagt
      661 cttgatgatg ctgttagctg atctcgatta tgaaaattac atccaaattg cccaagccga
      721 tattgccgac gctttaggta tgcagaaaac caatgtaagc cgttcggtta aggcgctaat
      781 tgacctatcc gtgattcttc aaggcccaaa agtagggcgc agttacagtt accgtctgaa
      841 ccctcagttt ggctggaaag gtactgtcag caaccacaag aaagcactaa aaaacggcct
      901 cagcgttata cagggcggca gaacctaatc tggaatgccg caaatgacgt cactttgcgg
      961 cgttagccct atcctgcatc gcatcaaaac taacgctcca taccacccat gccacgcgat
     1021 cgcgtctgtc gctgtttttc cttttcctgg ttttgctgct taaaccgctg agccatcatc
     1081 aggatttcgg tcatctgctc tctggaaagc cccttaaaag gctctgtaac gctctgtagg
     1141 cgtttctgct gcgcatccat agtcttctgt agctcacgcg ctctttttgc gttctgggcg
     1201 ctctgagagg ccatagcgat ggttcctgca aagccatcgt tcactgcgtg gcttagacgt
     1261 ttggctatgg ctgcctgatc ttccacgtct ttggtgaaaa tgcccttccg caatacacgc
     1321 ggctccagcg cctccggcga gatcgatacc tggctacggg tgccacggtt tatcgattcg
     1381 tagtagtgct gaactgtctg atgcgtggcg cggcttccct cgatgccgcg ctcaagaccc
     1441 agttttttta ctgattcagc gtaggtgctc tgatcttcac gcatctttga ccgcccgcca
     1501 ataaactctt tcgcggacag ccgtccatcc tgcgtcaatg gcaccacgaa cgcagacagg
     1561 tgcggggtgg cctcgtcccg gtgaaccacc gccgccacaa cacgatcctt cccgtatttc
     1621 ttctccagcc attgctcaga gcgggcgaaa aactccgcct gctgccgcgg tgtggcctcg
     1681 ttccaccact cagggcttgc cgtcataacg tattcaacag ccagtaccgc atctttacgg
     1741 cgtttttccg gcaacagctc ccgcagcttt cccatcgcct catctgccga ctgagacaca
     1801 gagcagtagt tttctggtgt ccgttcagcg tcagcattcg gcgtctcacg ctccctgtag
     1861 cagtgctgca acgcgctggc cacactgccc attcccgtca gctttttgca gcgcattatc
     1921 gcgtaattcg ccatgcttac cccctcgttc cggcgtccat ccggccagtc gggggatcgc
     1981 attgcgatgc ctccggcggg ccactatcag gatgatagtg tactcactag actttgcttc
     2041 gcaaaatcgt tcgggcagca agctgccaga aggtcaaaat caacggcggt ctggcaggtg
     2101 gaaggcgtcg ctccgcgtca cctcccacca ctgccaagcc tgttttattt gtgcgtcgtc
     2161 aagggtgaaa tgcactcgct ccgctcgccc ttgacgaaat caggat
//
