LOCUS       CP103362                4205 bp    DNA     circular BCT 31-AUG-2022
DEFINITION  Bacteroides thetaiotaomicron strain BFG-505 plasmid unnamed1,
            complete sequence.
ACCESSION   CP103362
VERSION     CP103362.1
DBLINK      BioProject: PRJNA646575
            BioSample: SAMN30323408
KEYWORDS    .
SOURCE      Bacteroides thetaiotaomicron
  ORGANISM  Bacteroides thetaiotaomicron
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1  (bases 1 to 4205)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4205)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 21x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/22/2022 22:43:42
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,518
            CDSs (total)                      :: 5,430
            Genes (coding)                    :: 3,528
            CDSs (with protein)               :: 3,528
            Genes (RNA)                       :: 88
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 1,902
            CDSs (without protein)            :: 1,902
            Pseudo Genes (ambiguous residues) :: 0 of 1,902
            Pseudo Genes (frameshifted)       :: 1,816 of 1,902
            Pseudo Genes (incomplete)         :: 80 of 1,902
            Pseudo Genes (internal stop)      :: 104 of 1,902
            Pseudo Genes (multiple problems)  :: 94 of 1,902
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            NCBI analysis of this genome has determined that >30% of the
            predicted CDS features contain frameshifts, which is well above the
            usually observed value of <10%.
FEATURES             Location/Qualifiers
     source          1..4205
                     /organism="Bacteroides thetaiotaomicron"
                     /mol_type="genomic DNA"
                     /strain="BFG-505"
                     /host="Homo sapiens"
                     /db_xref="taxon:818"
                     /plasmid="unnamed1"
                     /geo_loc_name="USA: Bethesda"
                     /collection_date="2004-09-08"
     gene            1..795
                     /locus_tag="NXY28_27560"
     CDS             1..795
                     /locus_tag="NXY28_27560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="UVV61127.1"
                     /translation="MIGKGKSISHGVAALEYDLAKEINGQAVATEIARHELYGCTGAEM
                     VQEMKPYHIDFPNVKNNCLRFEVSPSIEESATFTDADWAELGNDFMQRMGLANHQYIII
                     RHSGTESKKEQAHLHILANRVSLSGELYRDNWIGKKATEAANAIAKERNFVQSQDIGKV
                     NKAEIKEAMDGVLKKMQGFDFTKFKEELGKRGFKVREARASTGKLNGYYVTARSGTEYK
                     ASEIGKGYTLAHIERTQSKLKCNSMNISHGNKLTPGSGSFQR"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            752..1204
                     /locus_tag="NXY28_27565"
     CDS             752..1204
                     /locus_tag="NXY28_27565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVV61128.1"
                     /translation="METNSHPEAAASNVKQGQYSPRKRKDTTPRVNPQLAVELVYQELK
                     RVEVYTKRIEDATARKVQIDGKSLESAENRLKNVLADFERQGYRMKNGGYVDKRISFYS
                     ILCAVISLLFACFMCYLWTDAAKDRDNYKQYYEYYQEQAREQKGNK"
                     /name="hypothetical protein"
     gene            1224..1454
                     /locus_tag="NXY28_27570"
     CDS             1224..1454
                     /locus_tag="NXY28_27570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005683050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="charged multivesicular body protein 2b-B"
                     /protein_id="UVV61129.1"
                     /translation="MGTTEHEEPRFFFILNKGAKSGGEITHAVLNGSIVSKPAGWDAFH
                     GLALAREKLSSEEIQQQMKELGVEMEIVPLI"
                     /name="charged multivesicular body protein 2b-B"
     gene            complement(1491..2516)
                     /locus_tag="NXY28_27575"
     CDS             complement(1491..2516)
                     /locus_tag="NXY28_27575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008657007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="UVV61130.1"
                     /translation="MKKKLPITKNKDVVVSWVYTWSKQQDMSIHEQRIVLRILEACQAE
                     LKGVKLKDYAGTKRKFEHGLWDVDAQMHVSDVIFSGRDYNEIIAALDSLAGRFFTYEDD
                     EEWWKCGFISNPKYKKRTGIITFRVSNDLWDVFTKFAKGYREFELNKALALPTGYSLRF
                     YMLMSGQVYPLDISLENLKDRLGIPADKYKDKNGKDRIDHFEERVLKPAKAALDESCPY
                     TFNYVKVRENPNNKRSKVTGFRFYPVYQPQFRDEELEGKELQAKVTARYQIDSHVYEYL
                     RYSCGFTSEEINRNKETFITAQEKITDLIGELALLNGKSREKNNPKGWIINALKGKIKD
                     K"
                     /name="replication initiation protein"
     gene            2986..3237
                     /locus_tag="NXY28_27580"
     CDS             2986..3237
                     /locus_tag="NXY28_27580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVV61124.1"
                     /translation="MEALSVREYRNNLAASFTKADNGEQVLIRRKNEIYALVKVGREDL
                     MITPELQARIDKAREEIKSGKCVTLKSSEDIDAYFDSL"
                     /name="hypothetical protein"
     gene            3234..3509
                     /locus_tag="NXY28_27585"
     CDS             3234..3509
                     /locus_tag="NXY28_27585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0004519 - endonuclease activity [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YoeB family toxin"
                     /protein_id="UVV61125.1"
                     /translation="MMYTIRVSDGVDKVIAKWKKSNPNLFKKYKKIYKELLEHPKTGLG
                     HPEALRGGGDITWSRHITAHDRIIYDIYEEVVEVYILEVEGHYNDK"
                     /name="type II toxin-antitoxin system YoeB family toxin"
     gene            3520..3717
                     /locus_tag="NXY28_27590"
     CDS             3520..3717
                     /locus_tag="NXY28_27590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007209655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVV61126.1"
                     /translation="MVEYCVYWLENGEPMHEVFSSLAAAEMYSCAIRGKENIEWVEVSE
                     EETIDLDELEDMFPDDFCGV"
                     /name="hypothetical protein"
ORIGIN
        1 atgataggga aagggaaaag catatcacat ggtgtggcgg cattggagta cgacctcgcc
       61 aaagagataa acgggcaggc agtagccacc gagatagccc ggcatgaact ttatgggtgt
      121 actggtgcgg aaatggtgca ggaaatgaaa ccgtatcaca ttgattttcc gaacgtaaaa
      181 aacaactgcc tacgtttcga ggtcagcccc tcgatagagg aaagcgccac ctttacggat
      241 gcggactggg cggaacttgg taacgacttc atgcagcgca tggggttggc gaaccaccag
      301 tacatcatca tccggcacag cggtacggag agcaagaaag agcaagccca cctgcacata
      361 ctggcaaacc gggtttccct ttccggggaa ctgtaccggg acaactggat agggaaaaag
      421 gcaacggaag ccgccaatgc catagccaag gaacggaact ttgtacagtc gcaggacatt
      481 ggcaaagtca acaaagcgga aatcaaggaa gccatggacg gcgtattgaa gaagatgcag
      541 ggctttgact ttaccaaatt caaggaagaa cttggtaaga gaggttttaa agtccgggaa
      601 gccagggcaa gcaccgggaa acttaacggc tactatgtca cagcccgaag cggtacggag
      661 tataaggcaa gcgagatagg gaaaggctac actctcgccc atatcgagcg gacacaaagc
      721 aaactgaagt gcaactcaat gaacatatct catggaaaca aactcacacc cggaagcggc
      781 agcttccaac gttaagcagg gacagtacag cccccggaaa agaaaagata caacgccaag
      841 ggtaaacccg cagcttgcgg tagaactggt gtatcaagaa ctaaagcgtg ttgaagtcta
      901 tacgaagcgc atagaggacg caacagcccg aaaggtacaa atagacggga aaagccttga
      961 aagtgccgaa aatcgcctaa aaaacgtgtt ggcggacttt gaacggcagg ggtacagaat
     1021 gaaaaacggc ggttatgtgg acaaacgaat ttcgttctac tcaatccttt gtgctgttat
     1081 ctccctattg ttcgcttgtt tcatgtgcta tctttggacg gatgcagcca aagaccggga
     1141 caactacaag cagtattatg aatactacca agagcaggca agggaacaaa aggggaataa
     1201 ataaacatct aactttacga attatgggaa caacggaaca cgaagaaccc cggttcttct
     1261 tcatactgaa caagggtgcg aagtccggcg gcgaaatcac ccatgccgtc ctaaacggta
     1321 gtatcgtttc gaagccggca ggctgggacg cctttcatgg gcttgcactg gcgagagaga
     1381 aactaagcag cgaggaaata caacagcaga tgaaagaact tggtgtagaa atggaaatcg
     1441 ttcctctgat ttgacaagat tacccggagt gtttcagccg ggtaatcttg ttacttatcc
     1501 ttgattttcc ctttaagggc gtttataatc caccctttcg gattgttctt ttctcgtgat
     1561 tttccgttta ggagagccag ttctccgata aggtcggtta tcttttcttg tgccgttatg
     1621 aatgtctctt tgttccggtt tatctcttcc gatgtgaagc cgcaggaata acggaggtac
     1681 tcgtacacat ggctgtctat ctgatatcgt gctgtaacct ttgcttgcaa ttctttccct
     1741 tccagttctt catctctgaa ctgtggttga tagaccgggt agaacctaaa cccggtcacc
     1801 ttgctacgtt tgttgtttgg gttttcacgc actttcacgt agttgaaagt gtatgggcag
     1861 ctctcatcaa gcgcagcctt tgctggtttc aaaactcttt cctcaaaatg atctattctg
     1921 tcttttccgt tcttgtcctt gtatttgtcc gcaggtatgc caagacggtc tttcaagttt
     1981 tcaagggata tatccaaagg gtacacctgc ccactcatta acatgtaaaa cctaagggaa
     2041 tacccagtag gtagcgcaag agccttgttt aactcaaatt ctctgtaccc cttggcgaac
     2101 ttggtaaaca catcccaaag gtcgttagac acacgaaagg ttataatgcc agtgcgtttt
     2161 ttatattttg ggttagatat aaatccgcac ttccaccatt cctcgtcatc ttcgtaagta
     2221 aaaaaacgtc ctgccaaaga atcgagtgcg gctatgattt cattgtaatc acgtccggaa
     2281 aaaataacgt cagatacatg catttgtgca tcaacatccc aaagtccatg ctcaaacttg
     2341 cgtttcgtgc ctgcataatc tttcagtttt actcccttta gttcagcttg gcacgcttcc
     2401 agtatgcgaa gaactattct ttgttcgtgt atggacatgt cttgctgttt tgaccatgta
     2461 tatacccatg aaacaacaac atctttattc ttggtaatag gtagtttctt tttcataaac
     2521 gattgatttg ctgcaaatat acacaatccc cacattaaaa caaaaaagag gggtaaaact
     2581 cccaaagtgt ggggactaat ttacttttaa actcccaaag tgtggggact aaactcccaa
     2641 agtgtgggga aacacatgtt ctaatccctt tatttatggg cgtttgcgaa gaagtgatag
     2701 agcatattac agacgatgct tataacagac aaggggaatt tatagagcta agtggttgat
     2761 ttactgtcgg aagatgctta taacagacaa ggggaattta tagagctaag tggttgattt
     2821 actgtcggaa aaagaaaaac gatagggaaa aagagcaaag caaaaccaac caacgggcgg
     2881 taggattgga aacgggtttt tatggcgtgt acacgtttgt gtacaaaatg tttgtatttt
     2941 attgaaatat agctatcttt gtgctgaatt taaaagcaaa cagatatgga agcattatca
     3001 gtaagagaat accgtaacaa cctcgcagcg tctttcacca aagctgacaa tggcgagcag
     3061 gtactaattc gcaggaaaaa cgagatttac gctttggtaa aagttggtcg tgaagatttg
     3121 atgataaccc cggagctgca agcaaggatt gacaaggcaa gggaagaaat caaatccgga
     3181 aagtgtgtta ccctcaaaag cagtgaggat attgacgctt atttcgatag tctatgatgt
     3241 acacaattag ggtttccgac ggggtggata aggtgattgc caaatggaag aaatcaaacc
     3301 ccaatttgtt caagaagtat aagaaaatct acaaagaatt gttagagcac cctaagactg
     3361 ggcttgggca tcccgaagcg ttaaggggcg gtggggatat tacatggtct cgacacatta
     3421 ccgcccatga ccggataatc tatgacattt acgaggaagt ggtagaggtc tacatcttgg
     3481 aggtagaggg gcattacaac gataaatgat aaaactgtta tggtcgaata ttgtgtttac
     3541 tggttagaga acggcgagcc tatgcacgag gtgttctctt ctcttgccgc cgccgagatg
     3601 tactcatgtg cgataagagg gaaagaaaac attgaatggg tggaggtgtc cgaagaagaa
     3661 accattgatt tggacgaact ggaagacatg ttcccggatg acttctgcgg cgtgtaatcc
     3721 ccttgggtag aaatggggta gaatttgtta ggctgtgggg gattttctaa cacgccgggg
     3781 ctttttgctg ggcggttggc gtggatgtat tcccatgcgt catgtgtata tatagcaaga
     3841 agtgtccttg tcggacaatt cttgcttttc tcgctttgct caaaaagatt ttaagattac
     3901 ctttgtggca tggaactaag acggaacgaa aagattacat tccggtgtac cgaacttgaa
     3961 aaggacgcac ttgcggagca ggcagcccgg tgcagtctaa gcgtatcgga atactgccgg
     4021 agtttgtccc ttgggggccg cccaagggag aggtacaccg aggaggaacg gcagcttctc
     4081 cgggacatag cccagttgaa aggaacgctc caacggctga acaactactt cggtggtcgc
     4141 cagtaccggg aagtgttcga ggagaaccgg gcactaatta cagagctcaa aaaaatactc
     4201 tcacg
//
