LOCUS       CP103287                4189 bp    DNA     circular BCT 29-AUG-2022
DEFINITION  Parabacteroides distasonis strain BFG-574 plasmid unnamed1, complete
            sequence.
ACCESSION   CP103287
VERSION     CP103287.1
DBLINK      BioProject: PRJNA646575
            BioSample: SAMN30323457
KEYWORDS    .
SOURCE      Parabacteroides distasonis
  ORGANISM  Parabacteroides distasonis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae;
            Parabacteroides.
REFERENCE   1  (bases 1 to 4189)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4189)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 265x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/22/2022 22:31:46
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,580
            CDSs (total)                      :: 4,477
            Genes (coding)                    :: 4,220
            CDSs (with protein)               :: 4,220
            Genes (RNA)                       :: 103
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 79
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 257
            CDSs (without protein)            :: 257
            Pseudo Genes (ambiguous residues) :: 0 of 257
            Pseudo Genes (frameshifted)       :: 220 of 257
            Pseudo Genes (incomplete)         :: 34 of 257
            Pseudo Genes (internal stop)      :: 14 of 257
            Pseudo Genes (multiple problems)  :: 11 of 257
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4189
                     /organism="Parabacteroides distasonis"
                     /mol_type="genomic DNA"
                     /strain="BFG-574"
                     /host="Homo sapiens"
                     /db_xref="taxon:823"
                     /plasmid="unnamed1"
                     /geo_loc_name="USA: Bethesda"
                     /collection_date="2013-04-24"
     gene            1..1026
                     /locus_tag="NXX37_22870"
     CDS             1..1026
                     /locus_tag="NXX37_22870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008657007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="UVS67730.1"
                     /translation="MKKKLPITKNKDVVVSWVYTWSKQQDMSIHEQRIVLRILEACQAE
                     LKGVKLKDYAGTKRKFEHGLWDVDAQMHVSDVIFSGRDYNEIIAALDSLAGRFFTYEDD
                     EEWWKCGFISNPKYKKRTGIITFRVSNDLWDVFTKFAKGYREFELNKALALPTGYSLRF
                     YMLMSGQVYPLDISLENLKDRLGIPADKYKDKNGKDRIDHFEERVLKPAKAALDESCPY
                     TFNYVKVRENPNNKRSKVTGFRFYPVYQPQFRDEELEGKELQAKVTARYQIDSHVYEYL
                     RYSCGFTSEEINRNKETFITAQEKITDLIGELALLNGKSREKNNPKGWIINALKGKIKD
                     K"
                     /name="replication initiation protein"
     gene            complement(1063..1293)
                     /locus_tag="NXX37_22875"
     CDS             complement(1063..1293)
                     /locus_tag="NXX37_22875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005683050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="charged multivesicular body protein 2b-B"
                     /protein_id="UVS67731.1"
                     /translation="MGTTEHEEPRFFFILNKGAKSGGEITHAVLNGSIVSKPAGWDAFH
                     GLALAREKLSSEEIQQQMKELGVEMEIVPLI"
                     /name="charged multivesicular body protein 2b-B"
     gene            complement(1313..1765)
                     /locus_tag="NXX37_22880"
     CDS             complement(1313..1765)
                     /locus_tag="NXX37_22880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVS67732.1"
                     /translation="METNSHPEAAASNVKQGQYSPRKRKDTTPRVNPQLAVELVYQELK
                     RVEVYTKRIEDATARKVQIDGKSLESAENRLKNVLADFERQGYRMKNGGYVDKRISFYS
                     ILCAVISLLFACFMCYLWTDAAKDRDNYKQYYEYYQEQAREQKGNK"
                     /name="hypothetical protein"
     gene            complement(1722..2516)
                     /locus_tag="NXX37_22885"
     CDS             complement(1722..2516)
                     /locus_tag="NXX37_22885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="UVS67733.1"
                     /translation="MIGKGKSISHGVAALEYDLAKEINGQAVATEIARHELYGCTGAEM
                     VQEMKPYHIDFPNVKNNCLRFEVSPSIEESATFTDADWAELGNDFMQRMGLANHQYIII
                     RHSGTESKKEQAHLHILANRVSLSGELYRDNWIGKKATEAANAIAKERNFVQSQDIGKV
                     NKAEIKEAMDGVLKKMQGFDFTKFKEELGKRGFKVREARASTGKLNGYYVTARSGTEYK
                     ASEIGKGYTLAHIERTQSKLKCNSMNISHGNKLTPGSGSFQR"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(3005..3244)
                     /locus_tag="NXX37_22890"
     CDS             complement(3005..3244)
                     /locus_tag="NXX37_22890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007209655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVS67727.1"
                     /translation="MVEYCVYWLENGEPMHEVFSSLAAAEMYSCAIRGKENIEWVEVSE
                     EETIDLDELEDMSEEETIDLDELEDMFPDDFCGV"
                     /name="hypothetical protein"
     gene            complement(3255..3530)
                     /locus_tag="NXX37_22895"
     CDS             complement(3255..3530)
                     /locus_tag="NXX37_22895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0004519 - endonuclease activity [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YoeB family toxin"
                     /protein_id="UVS67728.1"
                     /translation="MMYTIRVSDGVDKVIAKWKKSNPNLFKKYKKIYKELLEHPKTGLG
                     HPEALRGGGDITWSRHITAHDRIIYDIYEEVVEVYILEVEGHYNDK"
                     /name="type II toxin-antitoxin system YoeB family toxin"
     gene            complement(3527..3778)
                     /locus_tag="NXX37_22900"
     CDS             complement(3527..3778)
                     /locus_tag="NXX37_22900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVS67729.1"
                     /translation="MEALSVREYRNNLAASFTKADNGEQVLIRRKNEIYALVKVGREDL
                     MITPELQARIDKAREEIKSGKCVTLKSSEDIDAYFDSL"
                     /name="hypothetical protein"
ORIGIN
        1 atgaaaaaga aactacctat taccaagaat aaagatgttg ttgtttcatg ggtatataca
       61 tggtcaaaac agcaagacat gtccatacac gaacaaagaa tagttcttcg catactggaa
      121 gcgtgccaag ctgaactaaa gggagtaaaa ctgaaagatt atgcaggcac gaaacgcaag
      181 tttgagcatg gactttggga tgttgatgca caaatgcatg tatctgacgt tattttttcc
      241 ggacgtgatt acaatgaaat catagccgca ctcgattctt tggcaggacg tttttttact
      301 tacgaagatg acgaggaatg gtggaagtgc ggatttatat ctaacccaaa atataaaaaa
      361 cgcactggca ttataacctt tcgtgtgtct aacgaccttt gggatgtgtt taccaagttc
      421 gccaaggggt acagagaatt tgagttaaac aaggctcttg cgctacctac tgggtattcc
      481 cttaggtttt acatgttaat gagtgggcag gtgtaccctt tggatatatc ccttgaaaac
      541 ttgaaagacc gtcttggcat acctgcggac aaatacaagg acaagaacgg aaaagacaga
      601 atagatcatt ttgaggaaag agttttgaaa ccagcaaagg ctgcgcttga tgagagctgc
      661 ccatacactt tcaactacgt gaaagtgcgt gaaaacccaa acaacaaacg tagcaaggtg
      721 accgggttta ggttctaccc ggtctatcaa ccacagttca gagatgaaga actggaaggg
      781 aaagaattgc aagcaaaggt tacagcacga tatcagatag acagccatgt gtacgagtac
      841 ctccgttatt cctgcggctt cacatcggaa gagataaacc ggaacaaaga gacattcata
      901 acggcacaag aaaagataac cgaccttatc ggagaactgg ctctcctaaa cggaaaatca
      961 cgagaaaaga acaatccgaa agggtggatt ataaacgccc ttaaagggaa aatcaaggat
     1021 aagtaacaag attacccggc tgaaacactc cgggtaatct tgtcaaatca gaggaacgat
     1081 ttccatttct acaccaagtt ctttcatctg ctgttgtatt tcctcgctgc ttagtttctc
     1141 tctcgccagt gcaagcccat gaaaggcgtc ccagcctgcc ggcttcgaaa cgatactacc
     1201 gtttaggacg gcatgggtga tttcgccgcc ggacttcgca cccttgttca gtatgaagaa
     1261 gaaccggggt tcttcgtgtt ccgttgttcc cataattcgt aaagttagat gtttatttat
     1321 tccccttttg ttcccttgcc tgctcttggt agtattcata atactgcttg tagttgtccc
     1381 ggtctttggc tgcatccgtc caaagatagc acatgaaaca agcgaacaat agggagataa
     1441 cagcacaaag gattgagtag aacgaaattc gtttgtccac ataaccgccg tttttcattc
     1501 tgtacccctg ccgttcaaag tccgccaaca cgttttttag gcgattttcg gcactttcaa
     1561 ggcttttccc gtctatttgt acctttcggg ctgttgcgtc ctctatgcgc ttcgtataga
     1621 cttcaacacg ctttagttct tgatacacca gttctaccgc aagctgcggg tttacccttg
     1681 gcgttgtatc ttttcttttc cgggggctgt actgtccctg cttaacgttg gaagctgccg
     1741 cttccgggtg tgagtttgtt tccatgagat atgttcattg agttgcactt cagtttgctt
     1801 tgtgtccgct cgatatgggc gagagtgtag cctttcccta tctcgcttgc cttatactcc
     1861 gtaccgcttc gggctgtgac atagtagccg ttaagtttcc cggtgcttgc cctggcttcc
     1921 cggactttaa aacctctctt accaagttct tccttgaatt tggtaaagtc aaagccctgc
     1981 atcttcttca atacgccgtc catggcttcc ttgatttccg ctttgttgac tttgccaatg
     2041 tcctgcgact gtacaaagtt ccgttccttg gctatggcat tggcggcttc cgttgccttt
     2101 ttccctatcc agttgtcccg gtacagttcc ccggaaaggg aaacccggtt tgccagtatg
     2161 tgcaggtggg cttgctcttt cttgctctcc gtaccgctgt gccggatgat gatgtactgg
     2221 tggttcgcca accccatgcg ctgcatgaag tcgttaccaa gttccgccca gtccgcatcc
     2281 gtaaaggtgg cgctttcctc tatcgagggg ctgacctcga aacgtaggca gttgtttttt
     2341 acgttcggaa aatcaatgtg atacggtttc atttcctgca ccatttccgc accagtacac
     2401 ccataaagtt catgccgggc tatctcggtg gctactgcct gcccgtttat ctctttggcg
     2461 aggtcgtact ccaatgccgc cacaccatgt gatatgcttt tccctttccc tatcatcgtg
     2521 agagtatttt tttgagctct gtaattagtg cccggttctc ctcgaacact tcccggtact
     2581 ggcgaccacc gaagtagttg ttcagccgtt ggagcgttcc tttcaactgg gctatgtccc
     2641 ggagaagctg ccgttcctcc tcggtgtacc tctcccttgg gcgcccccca agggacaaac
     2701 tccggcagta ttccgatacg cttagactgc accgggctgc ctgctccgca agtgcgtcct
     2761 tttcaagttc ggtacaccgg aatgtaatct tttcgttccg tcttagttcc atgccacaaa
     2821 ggtaatctta aaatcttttt gagcaaagcg agaaaagcaa gaattgtccg acaaggacac
     2881 ttcttgctat atatacacat gccgcatggg aatacatcca cgccaaccgc ccagcaaaaa
     2941 gccccggcgt gttagaaaat cccccacagc ctaacaaatt ctaccccatt tctacccaag
     3001 gggattacac gccgcagaag tcatccggga acatgtcttc cagttcgtcc aaatcaatgg
     3061 tttcttcttc ggacatgtct tccagttcgt ccaaatcaat ggtttcttct tcggacacct
     3121 ccacccattc aatgttttct ttccctctta tcgcacatga gtacatctcg gcggcggcaa
     3181 gagaagagaa cacctcgtgc ataggctcgc cgttctctaa ccagtaaaca caatattcga
     3241 ccataacagt tttatcattt atcgttgtaa tgcccctcta cctccaagat gtagacctct
     3301 accacttcct cgtaaatgtc atagattatc cggtcatggg cggtaatgtg tcgagaccat
     3361 gtaatatccc caccgcccct taacgcttcg ggatgcccaa gcccagtctt agggtgctct
     3421 aacaattctt tgtagatttt cttatacttc ttgaacaaat tggggtttga tttcttccat
     3481 ttggcaatca ccttatccac cccgtcggaa accctaattg tgtacatcat agactatcga
     3541 aataagcgtc aatatcctca ctgcttttga gggtaacaca ctttccggat ttgatttctt
     3601 cccttgcctt gtcaatcctt gcttgcagct ccggggttat catcaaatct tcacgaccaa
     3661 cttttaccaa agcgtaaatc tcgtttttcc tgcgaattag tacctgctcg ccattgtcag
     3721 ctttggtgaa agacgctgcg aggttgttac ggtattctct tactgataat gcttccatat
     3781 ctgtttgctt ttaaattcag cacaaagata gctatatttc aataaaatac aaacattttg
     3841 tacacaaacg tgtacacgcc ataaaaaccc gtttccaatc ctaccgcccg ttggttggtt
     3901 ttgctttgct ctttttccct atcgtttttc tttttccgac agtaaatcaa ccacttagct
     3961 ctataaattc cccttgtctg ttataagcat cgtctgtaat atgctctatc acttcttcgc
     4021 aaacgcccat aaataaaggg attagaacat gtgtttcccc acactttggg agtttagtcc
     4081 ccacactttg ggagtttaaa agtaaattag tccccacact ttgggagttt tacccctctt
     4141 ttttgtttta atgtggggat tgtgtatatt tgcagcaaat caatcgttt
//
