LOCUS       CP103270                4162 bp    DNA     circular BCT 29-AUG-2022
DEFINITION  Bacteroides thetaiotaomicron strain BFG-478 plasmid unnamed2,
            complete sequence.
ACCESSION   CP103270
VERSION     CP103270.1
DBLINK      BioProject: PRJNA646575
            BioSample: SAMN30323382
KEYWORDS    .
SOURCE      Bacteroides thetaiotaomicron
  ORGANISM  Bacteroides thetaiotaomicron
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1  (bases 1 to 4162)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4162)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 83x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/22/2022 22:41:54
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,116
            CDSs (total)                      :: 5,027
            Genes (coding)                    :: 4,538
            CDSs (with protein)               :: 4,538
            Genes (RNA)                       :: 89
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 489
            CDSs (without protein)            :: 489
            Pseudo Genes (ambiguous residues) :: 0 of 489
            Pseudo Genes (frameshifted)       :: 444 of 489
            Pseudo Genes (incomplete)         :: 59 of 489
            Pseudo Genes (internal stop)      :: 17 of 489
            Pseudo Genes (multiple problems)  :: 24 of 489
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4162
                     /organism="Bacteroides thetaiotaomicron"
                     /mol_type="genomic DNA"
                     /strain="BFG-478"
                     /host="Homo sapiens"
                     /db_xref="taxon:818"
                     /plasmid="unnamed2"
                     /geo_loc_name="USA: Bethesda"
                     /collection_date="2003-05-05"
     gene            join(3915..4162,1..4)
                     /locus_tag="NXY16_25550"
     CDS             join(3915..4162,1..4)
                     /locus_tag="NXY16_25550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVS27893.1"
                     /translation="MEALSVREYRNNLAASFTKADNGEQVLIRRKNEIYALVKVGREDL
                     MITPELQARIDKAREEIKSGKCVTLKSSEDIDAYFDSL"
                     /name="hypothetical protein"
     gene            1..276
                     /locus_tag="NXY16_25555"
     CDS             1..276
                     /locus_tag="NXY16_25555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0004519 - endonuclease activity [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YoeB family toxin"
                     /protein_id="UVS27894.1"
                     /translation="MMYTIRVSDGVDKVIAKWKKSNPNLFKKYKKIYKELLEHPKTGLG
                     HPEALRGGGDITWSRHITAHDRIIYDIYEEVVEVYILEVEGHYNDK"
                     /name="type II toxin-antitoxin system YoeB family toxin"
     gene            287..484
                     /locus_tag="NXY16_25560"
     CDS             287..484
                     /locus_tag="NXY16_25560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007209655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVS27895.1"
                     /translation="MVEYCVYWLENGEPMHEVFSSLAAAEMYSCAIRGKENIEWVEVSE
                     EETIDLDELEDMFPDDFCGV"
                     /name="hypothetical protein"
     gene            973..1767
                     /locus_tag="NXY16_25565"
     CDS             973..1767
                     /locus_tag="NXY16_25565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="UVS27897.1"
                     /translation="MIGKGKSISHGVAALEYDLAKEINGQAVATEIARHELYGCTGAEM
                     VQEMKPYHIDFPNVKNNCLRFEVSPSIEESATFTDADWAELGNDFMQRMGLANHQYIII
                     RHSGTESKKEQAHLHILANRVSLSGELYRDNWIGKKATEAANAIAKERNFVQSQDIGKV
                     NKAEIKEAMDGVLKKMQGFDFTKFKEELGKRGFKVREARASTGKLNGYYVTARSGTEYK
                     ASEIGKGYTLAHIERTQSKLKCNSMNISHGNKLTPGSGSFQR"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1724..2191
                     /locus_tag="NXY16_25570"
     CDS             1724..2191
                     /locus_tag="NXY16_25570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVS27896.1"
                     /translation="METNSHPEAAASNVKQGQYSPRKRKDTTPRVNPQLAVELVYQELK
                     RVEVYTKRIEDATARKVQIDGKSLESAENRLKNVLADFVLADFERQGYRMKNGGYVDKR
                     ISFYSILCAVISLLFACFMCYLWTDAAKDRDNYKQYYEYYQEQAREQKGNK"
                     /name="hypothetical protein"
     gene            2211..2441
                     /locus_tag="NXY16_25575"
     CDS             2211..2441
                     /locus_tag="NXY16_25575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005683050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="charged multivesicular body protein 2b-B"
                     /protein_id="UVS27891.1"
                     /translation="MGTTEHEEPRFFFILNKGAKSGGEITHAVLNGSIVSKPAGWDAFH
                     GLALAREKLSSEEIQQQMKELGVEMEIVPLI"
                     /name="charged multivesicular body protein 2b-B"
     gene            complement(2478..3503)
                     /locus_tag="NXY16_25580"
     CDS             complement(2478..3503)
                     /locus_tag="NXY16_25580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008657007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="UVS27892.1"
                     /translation="MKKKLPITKNKDVVVSWVYTWSKQQDMSIHEQRIVLRILEACQAE
                     LKGVKLKDYAGTKRKFEHGLWDVDAQMHVSDVIFSGRDYNEIIAALDSLAGRFFTYEDD
                     EEWWKCGFISNPKYKKRTGIITFRVSNDLWDVFTKFAKGYREFELNKALALPTGYSLRF
                     YMLMSGQVYPLDISLENLKDRLGIPADKYKDKNGKDRIDHFEERVLKPAKAALDESCPY
                     TFNYVKVRENPNNKRSKVTGFRFYPVYQPQFRDEELEGKELQAKVTARYQIDSHVYEYL
                     RYSCGFTSEEINRNKETFITAQEKITDLIGELALLNGKSREKNNPKGWIINALKGKIKD
                     K"
                     /name="replication initiation protein"
ORIGIN
        1 atgatgtaca caattagggt ttccgacggg gtggataagg tgattgccaa atggaagaaa
       61 tcaaacccca atttgttcaa gaagtataag aaaatctaca aagaattgtt agagcaccct
      121 aagactgggc ttgggcatcc cgaagcgtta aggggcggtg gggatattac atggtctcga
      181 cacattaccg cccatgaccg gataatctat gacatttacg aggaagtggt agaggtctac
      241 atcttggagg tagaggggca ttacaacgat aaatgataaa actgttatgg tcgaatattg
      301 tgtttactgg ttagagaacg gcgagcctat gcacgaggtg ttctcttctc ttgccgccgc
      361 cgagatgtac tcatgtgcga taagagggaa agaaaacatt gaatgggtgg aggtgtccga
      421 agaagaaacc attgatttgg acgaactgga agacatgttc ccggatgact tctgcggcgt
      481 gtaatcccct tgggtagaaa tggggtagaa tttgttaggc tgtgggggat tttctaacac
      541 gccggggctt tttgctgggc ggttggcgtg gatgtattcc catgcggcat gtgtatatat
      601 agcaagaagt gtccttgtcg gacaattctt gcttttctcg ctttgctcaa aaagatttta
      661 agattacctt tgtggcatgg aactaagacg gaacgaaaag attacattcc ggtgtaccga
      721 acttgaaaag gacgcacttg cggagcaggc agcccggtgc agtctaagcg tatcggaata
      781 ctgccggagt ttgtcccttg gggggcgccc aagggagagg tacaccgagg aggaacggca
      841 gcttctccgg gacatagccc agttgaaagg aacgctccaa cggctgaaca actacttcgg
      901 tggtcgccag taccgggaag tgttcgagga gaaccgggca ctaattacag agctcaaaaa
      961 aatactctca cgatgatagg gaaagggaaa agtatatcac atggtgtggc ggcattggag
     1021 tacgacctcg ccaaagagat aaacgggcag gcagtagcca ccgagatagc ccggcatgaa
     1081 ctttatgggt gtactggtgc ggaaatggtg caggaaatga aaccgtatca cattgatttt
     1141 ccgaacgtaa aaaacaactg cctacgtttc gaggtcagcc cctcgataga ggaaagcgcc
     1201 acctttacgg atgcggactg ggcggaactt ggtaacgact tcatgcagcg catggggttg
     1261 gcgaaccacc agtacatcat catccggcac agcggtacgg agagcaagaa agagcaagcc
     1321 cacctgcaca tactggcaaa ccgggtttcc ctttccgggg aactgtaccg ggacaactgg
     1381 atagggaaaa aggcaacgga agccgccaat gccatagcca aggaacggaa ctttgtacag
     1441 tcgcaggaca ttggcaaagt caacaaagcg gaaatcaagg aagccatgga cggcgtattg
     1501 aagaagatgc agggctttga ctttaccaaa ttcaaggaag aacttggtaa gagaggtttt
     1561 aaagtccggg aagccagggc aagcaccggg aaacttaacg gctactatgt cacagcccga
     1621 agcggtacgg agtataaggc aagcgagata gggaaaggct acactctcgc ccatatcgag
     1681 cggacacaaa gcaaactgaa gtgcaactca atgaacatat ctcatggaaa caaactcaca
     1741 cccggaagcg gcagcttcca acgttaagca gggacagtac agcccccgga aaagaaaaga
     1801 tacaacgcca agggtaaacc cgcagcttgc ggtagaactg gtgtatcaag aactaaagcg
     1861 tgttgaagtc tatacgaagc gcatagagga cgcaacagcc cgaaaggtac aaatagacgg
     1921 gaaaagcctt gaaagtgccg aaaatcgcct aaaaaacgtg ttggcggact ttgtgttggc
     1981 ggactttgaa cggcaggggt acagaatgaa aaacggcggt tatgtggaca aacgaatttc
     2041 gttctactca atcctttgtg ctgttatctc cctattgttc gcttgtttca tgtgctatct
     2101 ttggacggat gcagccaaag accgggacaa ctacaagcag tattatgaat actaccaaga
     2161 gcaggcaagg gaacaaaagg ggaataaata aacatctaac tttacgaatt atgggaacaa
     2221 cggaacacga agaaccccgg ttcttcttca tactgaacaa gggtgcgaag tccggcggcg
     2281 aaatcaccca tgccgtccta aacggtagta tcgtttcgaa gccggcaggc tgggacgcct
     2341 ttcatgggct tgcactggcg agagagaaac taagcagcga ggaaatacaa cagcagatga
     2401 aagaacttgg tgtagaaatg gaaatcgttc ctctgatttg acaagattac ccggagtgtt
     2461 tcagccgggt aatcttgtta cttatccttg attttccctt taagggcgtt tataatccac
     2521 cctttcggat tgttcttttc tcgtgatttt ccgtttagga gagccagttc tccgataagg
     2581 tcggttatct tttcttgtgc cgttatgaat gtctctttgt tccggtttat ctcttccgat
     2641 gtgaagccgc aggaataacg gaggtactcg tacacatggc tgtctatctg atatcgtgct
     2701 gtaacctttg cttgcaattc tttcccttcc agttcttcat ctctgaactg tggttgatag
     2761 accgggtaga acctaaaccc ggtcaccttg ctacgtttgt tgtttgggtt ttcacgcact
     2821 ttcacgtagt tgaaagtgta tgggcagctc tcatcaagcg cagcctttgc tggtttcaaa
     2881 actctttcct caaaatgatc tattctgtct tttccgttct tgtccttgta tttgtccgca
     2941 ggtatgccaa gacggtcttt caagttttca agggatatat ccaaagggta cacctgccca
     3001 ctcattaaca tgtaaaacct aagggaatac ccagtaggta gcgcaagagc cttgtttaac
     3061 tcaaattctc tgtacccctt ggcgaacttg gtaaacacat cccaaaggtc gttagacaca
     3121 cgaaaggtta taatgccagt gcgtttttta tattttgggt tagatataaa tccgcacttc
     3181 caccattcct cgtcatcttc gtaagtaaaa aaacgtcctg ccaaagaatc gagtgcggct
     3241 atgatttcat tgtaatcacg tccggaaaaa ataacgtcag atacatgcat ttgtgcatca
     3301 acatcccaaa gtccatgctc aaacttgcgt ttcgtgcctg cataatcttt cagttttact
     3361 ccctttagtt cagcttggca cgcttccagt atgcgaagaa ctattctttg ttcgtgtatg
     3421 gacatgtctt gctgttttga ccatgtatat acccatgaaa caacaacatc tttattcttg
     3481 gtaataggta gtttcttttt cataaacgat tgatttgctg caaatataca caatccccac
     3541 attaaaacaa aaaagagggg taaaactccc aaagtgtggg gactaattta cttttaaact
     3601 cccaaagtgt ggggactaaa ctcccaaagt gtggggaaac acatgttcta atccctttat
     3661 ttatgggcat ttgcgaagaa gtgatagagc atattacaga cgatgcttat aacagacaag
     3721 gggaatttat agagctaagt ggttgattta ctgtcggaaa aagaaaaacg atagggaaaa
     3781 agagcaaagc aaaaccaacc aacgggcggt aggattggaa acgggttttt atggcgtgta
     3841 cacgtttgtg tacaaaatgt ttgtatttta ttgaaatata gctatctttg tgctgaattt
     3901 aaaagcaaac agatatggaa gcattatcag taagagaata ccgtaacaac ctcgcagcgt
     3961 ctttcaccaa agctgacaat ggcgagcagg tactaattcg caggaaaaac gagatttacg
     4021 ctttggtaaa agttggtcgt gaagatttga tgataacccc ggagctgcaa gcaaggattg
     4081 acaaggcaag ggaagaaatc aaatccggaa agtgtgttac cctcaaaagc agtgaggata
     4141 ttgacgctta tttcgatagt ct
//
