LOCUS       CP103255                4135 bp    DNA     circular BCT 29-AUG-2022
DEFINITION  Bacteroides fragilis strain BFG-506 plasmid unnamed2, complete
            sequence.
ACCESSION   CP103255
VERSION     CP103255.1
DBLINK      BioProject: PRJNA646575
            BioSample: SAMN30323409
KEYWORDS    .
SOURCE      Bacteroides fragilis
  ORGANISM  Bacteroides fragilis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1  (bases 1 to 4135)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4135)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 118x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/22/2022 21:53:01
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,531
            CDSs (total)                      :: 4,438
            Genes (coding)                    :: 4,127
            CDSs (with protein)               :: 4,127
            Genes (RNA)                       :: 93
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 311
            CDSs (without protein)            :: 311
            Pseudo Genes (ambiguous residues) :: 0 of 311
            Pseudo Genes (frameshifted)       :: 262 of 311
            Pseudo Genes (incomplete)         :: 55 of 311
            Pseudo Genes (internal stop)      :: 14 of 311
            Pseudo Genes (multiple problems)  :: 16 of 311
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4135
                     /organism="Bacteroides fragilis"
                     /mol_type="genomic DNA"
                     /strain="BFG-506"
                     /host="Homo sapiens"
                     /db_xref="taxon:817"
                     /plasmid="unnamed2"
                     /geo_loc_name="USA: Bethesda"
                     /collection_date="2004-04-14"
     gene            join(3885..4135,1)
                     /locus_tag="NXV41_22625"
     CDS             join(3885..4135,1)
                     /locus_tag="NXV41_22625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVS23355.1"
                     /translation="MEALSVREYRNNLAASFTKADNGEQVLIRRKNEIYALVKVGREDL
                     MITPELQARIDKAREEIKSGKCVTLKSSEDIDAYFDSL"
                     /name="hypothetical protein"
     gene            join(4133..4135,1..273)
                     /locus_tag="NXV41_22630"
     CDS             join(4133..4135,1..273)
                     /locus_tag="NXV41_22630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0004519 - endonuclease activity [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YoeB family toxin"
                     /protein_id="UVS23356.1"
                     /translation="MMYTIRVSDGVDKVIAKWKKSNPNLFKKYKKIYKELLEHPKTGLG
                     HPEALRGGGDITWSRHITAHDRIIYDIYEEVVEVYILEVEGHYNDK"
                     /name="type II toxin-antitoxin system YoeB family toxin"
     gene            284..481
                     /locus_tag="NXV41_22635"
     CDS             284..481
                     /locus_tag="NXV41_22635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007209655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVS23357.1"
                     /translation="MVEYCVYWLENGEPMHEVFSSLAAAEMYSCAIRGKENIEWVEVSE
                     EETIDLDELEDMFPDDFCGV"
                     /name="hypothetical protein"
     gene            970..1764
                     /locus_tag="NXV41_22640"
     CDS             970..1764
                     /locus_tag="NXV41_22640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="UVS23358.1"
                     /translation="MIGKGKSISHGVAALEYDLAKEINGQAVATEIARHELYGCTGAEM
                     VQEMKPYHIDFPNVKNNCLRFEVSPSIEESATFTDADWAELGNDFMQRMGLANHQYIII
                     RHSGTESKKEQAHLHILANRVSLSGELYRDNWIGKKATEAANAIAKERNFVQSQDIGKV
                     NKAEIKEAMDGVLKKMQGFDFTKFKEELGKRGFKVREARASTGKLNGYYVTARSGTEYK
                     ASEIGKGYTLAHIERTQSKLKCNSMNISHGNKLTPGSGSFQR"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1721..2173
                     /locus_tag="NXV41_22645"
     CDS             1721..2173
                     /locus_tag="NXV41_22645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVS23359.1"
                     /translation="METNSHPEAAASNVKQGQYSPRKRKDTTPRVNPQLAVELVYQELK
                     RVEVYTKRIEDATARKVQIDGKSLESAENRLKNVLADFERQGYRMKNGGYVDKRISFYS
                     ILCAVISLLFACFMCYLWTDAAKDRDNYKQYYEYYQEQAREQKGNK"
                     /name="hypothetical protein"
     gene            2193..2411
                     /locus_tag="NXV41_22650"
     CDS             2193..2411
                     /locus_tag="NXV41_22650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005683050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="charged multivesicular body protein 2b-B"
                     /protein_id="UVS23353.1"
                     /translation="MGTTEHEEPRFFFILKSGGEITHAVLNGSIVSKPAGWDAFHGLAL
                     AREKLSSEEIQQQMKELGVEMEIVPLI"
                     /name="charged multivesicular body protein 2b-B"
     gene            complement(2448..3473)
                     /locus_tag="NXV41_22655"
     CDS             complement(2448..3473)
                     /locus_tag="NXV41_22655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008657007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="UVS23354.1"
                     /translation="MKKKLPITKNKDVVVSWVYTWSKQQDMSIHEQRIVLRILEACQAE
                     LKGVKLKDYAGTKRKFEHGLWDVDAQMHVSDVIFSGRDYNEIIAALDSLAGRFFTYEDD
                     EEWWKCGFISNPKYKKRTGIITFRVSNDLWDVFTKFAKGYREFELNKALALPTGYSLRF
                     YMLMSGQVYPLDISLENLKDRLGIPADKYKDKNGKDRIDHFEERVLKPAKAALDESCPY
                     TFNYVKVRENPNNKRSKVTGFRFYPVYQPQFRDEELEGKELQAKVTARYQIDSHVYEYL
                     RYSCGFTSEEINRNKETFITAQEKITDLIGELALLNGKSREKNNPKGWIINALKGKIKD
                     K"
                     /name="replication initiation protein"
ORIGIN
        1 atgtacacaa ttagggtttc cgacggggtg gataaggtga ttgccaaatg gaagaaatca
       61 aaccccaatt tgttcaagaa gtataagaaa atctacaaag aattgttaga gcaccctaag
      121 actgggcttg ggcatcccga agcgttaagg ggcggtgggg atattacatg gtctcgacac
      181 attaccgccc atgaccggat aatctatgac atttacgagg aagtggtaga ggtctacatc
      241 ttggaggtag aggggcatta caacgataaa tgataaaact gttatggtcg aatattgtgt
      301 ttactggtta gagaacggcg agcctatgca cgaggtgttc tcttctcttg ccgccgccga
      361 gatgtactca tgtgcgataa gagggaaaga aaacattgaa tgggtggagg tgtccgaaga
      421 agaaaccatt gatttggacg aactggaaga catgttcccg gatgacttct gcggcgtgta
      481 atccccttgg gtagaaatgg ggtagaattt gttaggctgt gggggatttt ctaacacgcc
      541 ggggcttttt gctgggcggt tggcgtggat gtattcccat gcggcatgtg tatatatagc
      601 aagaagtgtc cttgtcggac aattcttgct tttctcgctt tgctcaaaaa gattttaaga
      661 ttacctttgt ggcatggaac taagacggaa cgaaaagatt acattccggt gtaccgaact
      721 tgaaaaggac gcacttgcgg agcaggcagc ccggtgcagt ctaagcgtat cggaatactg
      781 ccggagtttg tcccttgggg ggcgcccaag ggagaggtac accgaggagg aacggcagct
      841 tctccgggac atagcccagt tgaaaggaac gctccaacgg ctgaacaact acttcggtgg
      901 tcgccagtac cgggaagtgt tcgaggagaa ccgggcacta attacagagc tcaaaaaaat
      961 actctcacga tgatagggaa agggaaaagc atatcacatg gtgtggcggc attggagtac
     1021 gacctcgcca aagagataaa cgggcaggca gtagccaccg agatagcccg gcatgaactt
     1081 tatgggtgta ctggtgcgga aatggtgcag gaaatgaaac cgtatcacat tgattttccg
     1141 aacgtaaaaa acaactgcct acgtttcgag gtcagcccct cgatagagga aagcgccacc
     1201 tttacggatg cggactgggc ggaacttggt aacgacttca tgcagcgcat ggggttggcg
     1261 aaccaccagt acatcatcat ccggcacagc ggtacggaga gcaagaaaga gcaagcccac
     1321 ctgcacatac tggcaaaccg ggtttccctt tccggggaac tgtaccggga caactggata
     1381 gggaaaaagg caacggaagc cgccaatgcc atagccaagg aacggaactt tgtacagtcg
     1441 caggacattg gcaaagtcaa caaagcggaa atcaaggaag ccatggacgg cgtattgaag
     1501 aagatgcagg gctttgactt taccaaattc aaggaagaac ttggtaagag aggttttaaa
     1561 gtccgggaag ccagggcaag caccgggaaa cttaacggct actatgtcac agcccgaagc
     1621 ggtacggagt ataaggcaag cgagataggg aaaggctaca ctctcgccca tatcgagcgg
     1681 acacaaagca aactgaagtg caactcaatg aacatatctc atggaaacaa actcacaccc
     1741 ggaagcggca gcttccaacg ttaagcaggg acagtacagc ccccggaaaa gaaaagatac
     1801 aacgccaagg gtaaacccgc agcttgcggt agaactggtg tatcaagaac taaagcgtgt
     1861 tgaagtctat acgaagcgca tagaggacgc aacagcccga aaggtacaaa tagacgggaa
     1921 aagccttgaa agtgccgaaa atcgcctaaa aaacgtgttg gcggactttg aacggcaggg
     1981 gtacagaatg aaaaacggcg gttatgtgga caaacgaatt tcgttctact caatcctttg
     2041 tgctgttatc tccctattgt tcgcttgttt catgtgctat ctttggacgg atgcagccaa
     2101 agaccgggac aactacaagc agtattatga atactaccaa gagcaggcaa gggaacaaaa
     2161 ggggaataaa taaacatcta actttacgaa ttatgggaac aacggaacac gaagaacccc
     2221 ggttcttctt catactgaag tccggcggcg aaatcaccca tgccgtccta aacggtagta
     2281 tcgtttcgaa gccggcaggc tgggacgcct ttcatgggct tgcactggcg agagagaaac
     2341 taagcagcga ggaaatacaa cagcagatga aagaacttgg tgtagaaatg gaaatcgttc
     2401 ctctgatttg acaagattac ccggagtgtt tcagccgggt aatcttgtta cttatccttg
     2461 attttccctt taagggcgtt tataatccac cctttcggat tgttcttttc tcgtgatttt
     2521 ccgtttagga gagccagttc tccgataagg tcggttatct tttcttgtgc cgttatgaat
     2581 gtctctttgt tccggtttat ctcttccgat gtgaagccgc aggaataacg gaggtactcg
     2641 tacacatggc tgtctatctg atatcgtgct gtaacctttg cttgcaattc tttcccttcc
     2701 agttcttcat ctctgaactg tggttgatag accgggtaga acctaaaccc ggtcaccttg
     2761 ctacgtttgt tgtttgggtt ttcacgcact ttcacgtagt tgaaagtgta tgggcagctc
     2821 tcatcaagcg cagcctttgc tggtttcaaa actctttcct caaaatgatc tattctgtct
     2881 tttccgttct tgtccttgta tttgtccgca ggtatgccaa gacggtcttt caagttttca
     2941 agggatatat ccaaagggta cacctgccca ctcattaaca tgtaaaacct aagggaatac
     3001 ccagtaggta gcgcaagagc cttgtttaac tcaaattctc tgtacccctt ggcgaacttg
     3061 gtaaacacat cccaaaggtc gttagacaca cgaaaggtta taatgccagt gcgtttttta
     3121 tattttgggt tagatataaa tccgcacttc caccattcct cgtcatcttc gtaagtaaaa
     3181 aaacgtcctg ccaaagaatc gagtgcggct atgatttcat tgtaatcacg tccggaaaaa
     3241 ataacgtcag atacatgcat ttgtgcatca acatcccaaa gtccatgctc aaacttgcgt
     3301 ttcgtgcctg cataatcttt cagttttact ccctttagtt cagcttggca cgcttccagt
     3361 atgcgaagaa ctattctttg ttcgtgtatg gacatgtctt gctgttttga ccatgtatat
     3421 acccatgaaa caacaacatc tttattcttg gtaataggta gtttcttttt cataaacgat
     3481 tgatttgctg caaatataca caatccccac attaaaacaa aaaagagggg taaaactccc
     3541 aaagtgtggg gactaattta cttttaaact cccaaagtgt ggggactaaa ctcccaaagt
     3601 gtggggaaac acatgttcta atccctttat ttatgggcgt ttgcgaagaa gtgatagagc
     3661 atattacaga cgatgcttat aacagacaag gggaatttat agagctaagt ggttgattta
     3721 ctgtcggaaa aagaaaaacg atagggaaaa agagcaaagc aaaaccaacc aacgggcggt
     3781 aggattggaa acgggttttt atggcgtgta cacgtttgtg tacaaaatgt ttgtatttta
     3841 ttgaaatata gctatctttg tgctgaattt aaaagcaaac agatatggaa gcattatcag
     3901 taagagaata ccgtaacaac ctcgcagcgt ctttcaccaa agctgacaat ggcgagcagg
     3961 tactaattcg caggaaaaac gagatttacg ctttggtaaa agttggtcgt gaagatttga
     4021 tgataacccc ggagctgcaa gcaaggattg acaaggcaag ggaagaaatc aaatccggaa
     4081 agtgtgttac cctcaaaagc agtgaggata ttgacgctta tttcgatagt ctatg
//
