LOCUS       CP103189                5568 bp    DNA     circular BCT 29-AUG-2022
DEFINITION  Bacteroides fragilis strain BFG-57 plasmid unnamed1, complete
            sequence.
ACCESSION   CP103189
VERSION     CP103189.1
DBLINK      BioProject: PRJNA646575
            BioSample: SAMN30323461
KEYWORDS    .
SOURCE      Bacteroides fragilis
  ORGANISM  Bacteroides fragilis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1  (bases 1 to 5568)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5568)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 204x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/22/2022 22:21:35
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,594
            CDSs (total)                      :: 4,499
            Genes (coding)                    :: 4,336
            CDSs (with protein)               :: 4,336
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 75
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 163
            CDSs (without protein)            :: 163
            Pseudo Genes (ambiguous residues) :: 0 of 163
            Pseudo Genes (frameshifted)       :: 128 of 163
            Pseudo Genes (incomplete)         :: 34 of 163
            Pseudo Genes (internal stop)      :: 22 of 163
            Pseudo Genes (multiple problems)  :: 17 of 163
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..5568
                     /organism="Bacteroides fragilis"
                     /mol_type="genomic DNA"
                     /strain="BFG-57"
                     /host="Homo sapiens"
                     /db_xref="taxon:817"
                     /plasmid="unnamed1"
                     /geo_loc_name="USA: Bethesda"
                     /collection_date="1986-07-03"
     gene            1..249
                     /locus_tag="NXY10_22895"
     CDS             1..249
                     /locus_tag="NXY10_22895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008771457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="UVR36031.1"
                     /translation="MVTNIIQIGNSKGIILPSEVLKQLRLSLKSAVSISLDGNNIVIKA
                     QPRQGWAEAAKRAHENGDDELLIPDVFEDEKFEDWTW"
                     /name="AbrB/MazE/SpoVT family DNA-binding domain-containing
                     protein"
     gene            243..563
                     /locus_tag="NXY10_22900"
     CDS             243..563
                     /locus_tag="NXY10_22900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005799262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="UVR36032.1"
                     /translation="MVEQYEVYWVELDPTRGGEMAKTRPCVVVTPSDLNMYLTTVVIVP
                     ITSTIRNYPYRVLCSVAGREGEIATDQIRTVDKSRLKRKIGDLNFSEIKRLREVFQQMF
                     CE"
                     /name="type II toxin-antitoxin system PemK/MazF family
                     toxin"
     gene            600..998
                     /locus_tag="NXY10_22905"
     CDS             600..998
                     /locus_tag="NXY10_22905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005799260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exo-poly-alpha-D-galacturonosidase"
                     /protein_id="UVR36033.1"
                     /translation="MKPTDYIEWDNLKDIPFFLCQVVEDREKQDLDIYYLGKRVLHDYD
                     HVGHYLRTAVILFRRVKSRTADWVNLRNLWTLRNCVRENYNHGIGMNDLIFGENFDGDN
                     LDTLTPLTKKRFDFLCKRIKELDPYATI"
                     /name="exo-poly-alpha-D-galacturonosidase"
     gene            1641..2543
                     /locus_tag="NXY10_22910"
     CDS             1641..2543
                     /locus_tag="NXY10_22910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005799258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="UVR36034.1"
                     /translation="MKAYMDAHVCSNVYTVQGGKAHSHYCHRAFCPICQRIQTAQNVKK
                     FLPVMKYLASEGREFYFVTLTLQNCVTDDARVLRDFMRRCNRMWADGIRTKHKFRSLGI
                     SGVIKKECTYHVVKKDLFSFHYHFHIIVDSLEAAKYVVAQWKKLHGSTVADARFQKYKK
                     IEDFENAAIEVFKYASKASVSKSKGRDGKKKIQINYKALDMIYTAMHGMQRMSSFGQFR
                     TMIGDEALNDFRDEDLVLNIEGLNVEDGCYTWYMSVKDKVADWYNMETGEALCCYKVTR
                     KDELLQDIYLDEDIFPNSG"
                     /name="protein rep"
     gene            complement(2547..2981)
                     /locus_tag="NXY10_22915"
     CDS             complement(2547..2981)
                     /locus_tag="NXY10_22915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005812785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVR36035.1"
                     /translation="MNRIIHISLLISTVSLFLISNTGCVEESIISLICDITWAGKKTTD
                     ENGSVWQGTYKFNKNGTYTRTNIEIDKQGNKKEANIYGQWSFGDPSFSTIYFGGEHYWD
                     IDELTKNKFSFYDRSGKFGDPFMNREYIELTPYQENNTTN"
                     /name="hypothetical protein"
     gene            3073..3843
                     /locus_tag="NXY10_22920"
     CDS             3073..3843
                     /locus_tag="NXY10_22920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016274503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVR36029.1"
                     /translation="MKKVMFMFISLLTVLGVCSCNDNEVIEPVVSDSVSDMEVLSRFVD
                     VNEITNEYYFNENKKTRALSYVTGSDWQDLEKVSPLSIEKYKNNLQVLNAQVASAISNP
                     NTAYVVFSVNGKTLVKKVKEDANFDFSVFRDVVTKTRAVLPSLSINGGSQSTTGVFYDS
                     SRTLKMQVDLNASIQNNYYFFEVLNPNAKPSPDDNITTPESVAFSGTGPLWSNTFTWTS
                     YWDANVPGQGFKWEFKGKGTTPSFGFIANCTFSR"
                     /name="hypothetical protein"
     gene            complement(3913..5163)
                     /locus_tag="NXY10_22925"
     CDS             complement(3913..5163)
                     /locus_tag="NXY10_22925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005799237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVR36030.1"
                     /translation="MAKTCIRVEACNIGSSERHNLRSKELDYIRPELTHRNEQWVECSI
                     AEVHRDITEKYKEATGQGLQKKATPIREGVIVISEETTIQQLQDLAEKLEERFGVHAFQ
                     IYTHKDEGANVWDGKEEAWKPNYHAHMIFDWTDGHTGKTVKLNRHDMAEMQTITAECLN
                     MERGVSSDKKHLSAMQYKNKMETEKAEQLQKDIEQLNRAYTAGTEKITTVQKELSTAQK
                     ELNSMKTDIHINEAKEAAAKAGKTVFNAVTSVFNVGEVKRQAKEIETLKKENYNLSFKN
                     QNLEGQLRTNNIEMRRVQETTDRQIKAEASKLKPITNLFPEMENAQENIEELQTMGIQN
                     KDIRQLLIGKEIYYTGNLYDKDKRKSYQVKNVKIDISKSQNGITTIWLNNIHFKNFLKE
                     LWNTLQKTLDNGNWLHR"
                     /name="hypothetical protein"
     Typing          1495..2543
                     /name="rep_cluster_870"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.81"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          complement(3917..5163)
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atggtaacga atattattca gattggaaac agcaagggga taatacttcc ttccgaagta
       61 ttgaaacagt tgcgtttgtc cttgaaatcg gctgtgagca tttctttgga cgggaacaat
      121 attgtgataa aggcacaacc acggcaggga tgggcggaag ctgccaaacg tgcccatgag
      181 aatggggatg atgagttgct tatccctgat gtgtttgagg atgaaaagtt tgaggattgg
      241 acatggtaga acagtatgaa gtgtattggg tagagttaga ccctacccgt gggggtgaaa
      301 tggcaaagac acggccatgt gtagttgtca ctccttcaga tttgaatatg taccttacaa
      361 cagtagtcat tgttccgata acctcaacga taagaaatta tccttaccgg gttctgtgtt
      421 ctgtagccgg gcgtgaagga gagatagcca ctgatcaaat tcgcacggtg gataaaagcc
      481 ggctgaaaag aaagattgga gatttgaatt tcagtgagat aaaaaggtta cgtgaagtat
      541 ttcagcaaat gttctgtgaa taatggaaag tacggaaaga aaaatgcaaa taagacatta
      601 tgaaaccaac tgactacatc gaatgggata acctgaagga tattccattc ttcctctgtc
      661 aagtagtcga ggacagagaa aaacaagatt tggatattta ctatttgggc aaacgtgtct
      721 tgcacgatta cgaccatgtg gggcactatt tgcggactgc cgttatcttg ttccgcaggg
      781 taaagagccg cacagcagac tgggtaaacc tgcgtaacct ttggacgctg cgcaactgtg
      841 tgcgtgagaa ctacaatcac ggcataggaa tgaacgacct tatttttggg gagaatttcg
      901 atggagataa tctcgatacg cttacaccac ttacaaagaa acgctttgat tttttgtgta
      961 agcggattaa ggaacttgac ccatatgcaa ctatttaaca ctccattgag tgaaggcagg
     1021 gcttgtcttt gtgtgctccc cctttggggg acgggagggg gataagaaaa aaaaatacca
     1081 ccggagatgt cggatatccg tcaattcact ccggtgtttt ttttgcaact ctcccgtatc
     1141 gctcggcaag ggttgtcttt gtgtacggca aagatagttt tttttccgga agtatctttg
     1201 tctgttgtgg atttagtagt gtatttgtgt cagaattgcg cagccggggg aatgggggcg
     1261 agcccccata ctagataaac tagaaagttt cgtggtaaat gctttttgac ttgttatatg
     1321 taggtttttt gaatgatgtt tggcggtttg gaatgaatta cctacttttg ggctgagaaa
     1381 aaacgaaagc ccgaaggcag taaccaacgg gctttgtatt ttaagaatta gcaatcgttt
     1441 gtgttcgttc ttggcggggc ggataccaaa cgaaagccac atcaaaattt catatgtgca
     1501 aagatagaac aaatataacc aactgcaaag aaagtccgtt aaaaaacggt tctgatagtc
     1561 ttaaaaaaaa ggctaaagta aaaatcatat cccataattt tactcgaaaa ctttcggaaa
     1621 agaatccgga tagtaagctg atgaaagcat atatggatgc ccatgtgtgt tcaaatgttt
     1681 atactgtgca gggaggtaag gcgcattccc attattgtca tcgggctttt tgtcctatct
     1741 gtcagcgtat tcaaacggca caaaatgtaa agaagttcct tccggttatg aagtatttgg
     1801 cttcggaagg cagagagttt tattttgtga cgcttacctt gcaaaattgt gtaaccgatg
     1861 atgcaagggt attgcgagat ttcatgcgta gatgtaaccg gatgtgggct gatggtataa
     1921 ggacgaaaca caagtttcgt tcacttggta tttcgggggt gattaagaag gagtgtacct
     1981 atcatgtagt aaaaaaggat ttgttttcgt tccattatca ttttcatatt attgttgatt
     2041 cattggaagc tgcaaaatat gtagtagccc aatggaagaa attgcatggt agtacggttg
     2101 ctgatgcccg ttttcagaaa tataagaaga tagaggattt tgaaaatgca gcgatagagg
     2161 tttttaagta tgcttcaaag gcttctgtct caaaatcgaa aggtcgtgac ggtaaaaaaa
     2221 agattcagat aaattataag gctttggata tgatttatac tgccatgcat gggatgcagc
     2281 gcatgagtag tttcggacag ttccgcacca tgatcggaga tgaagcgttg aatgatttta
     2341 gagatgagga tttggttctt aatattgagg gattgaatgt tgaagatggt tgttatactt
     2401 ggtatatgtc tgtgaaagat aaggtggctg attggtataa tatggaaact ggggaggcat
     2461 tgtgttgtta taaggtcacc cggaaggatg aacttttgca ggatatttat ttagatgagg
     2521 atatttttcc taatagtggg tagttgttag tttgttgtat tgttttcttg gtatggtgtg
     2581 agttctatgt attctctatt catgaaagga tcgccaaatt ttccacttct gtcatagaag
     2641 gaaaatttgt ttttagttag ctcgtctatg tcccagtaat gttctccacc aaaataaatg
     2701 gtactgaaac ttggatcacc gaatgaccat tgtccgtaga tattggcttc ttttttattt
     2761 ccttgtttgt cgatttctat atttgtacgg gtatatgttc cgtttttatt gaatttgtat
     2821 gtaccttgcc agacactgcc gttttcgtct gttgtttttt taccagccca tgtaatatca
     2881 caaattaatg agattatgct ttcttcaaca catccggtgt ttgaaataag aaaaagtgat
     2941 actgttgaaa taagtaaaga gatatgtatt attctattca tagttaaata tttaatattc
     3001 aatgcaaaaa taggagaaat tttatatttt tgggcgaaac ctttatttat taactttaaa
     3061 aaaggaggat ttatgaaaaa agtaatgttt atgttcatca gtctactgac tgttttgggt
     3121 gtttgttcgt gtaatgataa tgaagtaata gaacctgtgg ttagtgattc tgtatctgat
     3181 atggaggtct tatctcgttt tgttgatgta aatgagatta caaatgaata ctatttcaat
     3241 gagaataaga aaacgagggc gttgtcttat gtaacaggtt cggattggca ggatttagaa
     3301 aaagttagtc ctttgagtat tgagaaatat aagaataacc tgcaggtttt aaatgctcaa
     3361 gtggcaagtg ctatttcaaa tcctaatacc gcttatgttg ttttttctgt aaatggaaag
     3421 actttggtta aaaaggtgaa ggaggatgct aattttgatt tttcagtatt tagggatgtt
     3481 gtaacgaaaa cgagggctgt tctcccttct ttgagtatta atggaggttc tcaaagcact
     3541 accggagttt tttacgattc cagtcgtact ttaaagatgc aagttgattt gaatgcttca
     3601 atacagaata attattattt ctttgaagta ttaaatccta atgctaaacc aagtccggat
     3661 gataatataa cgacacctga aagtgttgct tttagtggaa ctggaccgtt atggagtaac
     3721 actttcactt ggacttcgta ttgggatgca aatgtacctg gtcaaggttt taaatgggag
     3781 tttaaaggaa aaggtactac tccttctttt ggttttatag ctaattgcac ctttagtcgt
     3841 taaaaaatga acgggattta atttgaattg cacttctcaa aaaagagaag tgcaattctt
     3901 tttagtgtct ttctatcggt gtagccagtt accgttatct aaagtctttt gtagtgtatt
     3961 ccaaagttct ttaagaaagt ttttaaagtg gatgttattt agccaaattg tagtaatacc
     4021 attctgactt ttggagatat ctattttcac gtttttaact tggtatgatt ttctcttgtc
     4081 tttatcgtaa aggtttccag tgtagtatat ttcctttcca ataagaagtt gtcggatatc
     4141 tttattttgt attcccatag tttggagttc ctctatattt tcctgtgcat tttccatttc
     4201 cggaaaaagg ttggttatgg gttttagttt ggatgcttct gcctttatct gtctgtcggt
     4261 tgtttcctgt acccttcgca tctcgatgtt gttggttctt aattgtcctt ctaaattttg
     4321 attcttgaat gagaggttat aattttcttt tttgagggtt tcaatttctt tggcttgtcg
     4381 ttttacttcc cctacattaa agacgcttgt aacggcatta aatacggttt ttccggcttt
     4441 tgcggcagct tctttggctt cgttgatgtg tatgtcggtt ttcatgctgt ttagctcttt
     4501 ttgtgccgta ctaagttcct tttggactgt ggtgattttc tcggttccgg cagtgtatgc
     4561 cctgtttagt tgctcgatgt ctttttgaag ttgttcagct ttctctgttt ccattttgtt
     4621 tttgtattgc atggccgaca agtgtttctt gtctgaagaa actccacgtt ccatgttgag
     4681 acactctgct gttatagtct gcatctccgc catgtcgtgt ctgttcagct ttacagtttt
     4741 tcctgtatgg ccgtccgtcc agtcaaagat catgtgcgca tgatagttcg gtttccatgc
     4801 ttcttccttt ccgtcccata cgtttgcgcc ttcatcctta tgggtgtaga tttggaaggc
     4861 gtgcactcca aagcgttctt ccagtttttc ggccaagtct tgaagctgct ggattgtggt
     4921 ttcctcgctg attactatta ccccttcccg gattggggta gctttcttct gtaatccttg
     4981 tccggtggct tccttgtatt tttccgttat gtcccgatgt acttcggcaa tggaacattc
     5041 tacccactgt tcgttgcggt gtgtgagttc cggacggatg tagtcgagct ccttgcttct
     5101 taagttgtga cgttccgagc tgcctatatt gcaggcttcc actctgatac atgtctttgc
     5161 catatcttta ggttttaggt gtgtatgtct gtttagaaga tgtggcgtga aacgtcacat
     5221 cgcacggggt cgaggggaca cccctcgcac acaacccctt taggggttat agtgtgctat
     5281 aaccttttgc aaaggtaagc cttccggacg ggatttgcaa gcgctctgcc atgtgttccg
     5341 gatgtgcttg ggaacagaag ccggacaaaa gggaaaagga cacaaggcac aataaaaaat
     5401 catcggtcgg ggagcgctgc acggcaaggg ggtgcaccaa cactcccgac gagtgcagcc
     5461 attgacaggg ttctcggtga aaatggaaaa aagttgtttt tccttttgtt attgttataa
     5521 ctttatatat atttgtatcg tgataatcaa ttataaagtt ataacatt
//
