LOCUS       CP103175                2736 bp    DNA     circular BCT 29-AUG-2022
DEFINITION  Bacteroides ovatus strain BFG-126 plasmid unnamed3, complete
            sequence.
ACCESSION   CP103175
VERSION     CP103175.1
DBLINK      BioProject: PRJNA646575
            BioSample: SAMN30323173
KEYWORDS    .
SOURCE      Bacteroides ovatus
  ORGANISM  Bacteroides ovatus
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1  (bases 1 to 2736)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2736)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 236x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/22/2022 20:22:52
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,523
            CDSs (total)                      :: 5,434
            Genes (coding)                    :: 4,568
            CDSs (with protein)               :: 4,568
            Genes (RNA)                       :: 89
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 866
            CDSs (without protein)            :: 866
            Pseudo Genes (ambiguous residues) :: 0 of 866
            Pseudo Genes (frameshifted)       :: 821 of 866
            Pseudo Genes (incomplete)         :: 49 of 866
            Pseudo Genes (internal stop)      :: 23 of 866
            Pseudo Genes (multiple problems)  :: 24 of 866
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2736
                     /organism="Bacteroides ovatus"
                     /mol_type="genomic DNA"
                     /strain="BFG-126"
                     /host="Homo sapiens"
                     /db_xref="taxon:28116"
                     /plasmid="unnamed3"
                     /geo_loc_name="USA: Bethesda"
     gene            34..624
                     /locus_tag="NXW74_27610"
     CDS             34..624
                     /locus_tag="NXW74_27610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_process:
                     GO:0006260 - DNA replication [Evidence IEA]; GO_process:
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="UVR11842.1"
                     /translation="MENKKAVKLTDFQKNEENPFMKQAIEGIENHVVKKYKSNSGGDKR
                     AVVALADTETGEVFKTSFIRQIEVDEEQFTKLYLSNFAAFFDLSQAAIRVFGYFMTCMK
                     PKNDLIIFNRKKCLEYTKYKTDKAVYKGLAELVKAEIIARGPADNLWFINPLIVFNGDR
                     VTFAKTYVRKKTLAAQKKEEAEKRQLSLGFDEQ"
                     /name="replication/maintenance protein RepL"
     gene            1243..2328
                     /locus_tag="NXW74_27615"
     CDS             1243..2328
                     /locus_tag="NXW74_27615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="UVR11843.1"
                     /translation="MVQAVKPGSEIHNFREKELDYVRPELSHLNESWVGDSISHRLESA
                     KQRYLDTVGQKMQAKAAPIREGVIVIKQETTMQELQQFATVCKERFGIEAFQIHIHKDE
                     GYMNAKQWTPNLHAHVVFDWTQPNGKSVRLSRDDMAELQTIASETLGMERGVSSDRKHL
                     SAMQYKTECAKEQLQELSNDISSALDKHKDVQNQLLQLQKELRSIETKKNVQKLISKAS
                     EKFYGLIGKTVNDREKDALKAKVKALEGENEQLSDRLGKAILEKEQNGTKAFKAENDKE
                     YYRQQMDNARTTSNRLRTENQELKTETKELKKELGKMKDLFNSEQLEALRHHFPNISKA
                     MEEGKDLLKQITRSRGFGMGM"
                     /name="mobilization protein"
     Typing          2..614
                     /name="rep_cluster_1868"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.701"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          1241..2325
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="96.685"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 gtggagaata atatttccca aaaacacatc aaaatggaaa ataaaaaagc agttaagtta
       61 accgattttc aaaagaacga agaaaatcct tttatgaaac aagctataga aggtattgaa
      121 aatcatgttg ttaaaaagta taagagtaat agtggtggcg ataagagagc cgtagtagct
      181 ttagccgaca ctgaaactgg agaagtgttt aagacttcgt ttatccgtca aatagaagta
      241 gatgaagaac aattcactaa attgtatctt tctaactttg ctgcattctt tgacctatca
      301 caagcagcta ttcgggtttt tggttacttt atgacctgca tgaaacccaa aaatgattta
      361 atcatcttca atagaaaaaa atgcctagaa tataccaaat acaaaacaga caaagccgtt
      421 tataaaggac ttgcagaact tgtaaaagct gaaatcatag cccgaggacc agccgataat
      481 ctttggttta ttaatcctct gatagtattc aatggtgacc gagtgacatt tgctaaaaca
      541 tacgttcgga aaaagacttt agctgcccaa aagaaagaag aagcagagaa acgacaatta
      601 tcacttggct ttgatgaaca gtaacactcc attgagtgaa gctgccgttt ggtcgctccc
      661 cctttggggg cggggggggg atagataaag ttcctctatg taaagttata atgggggatg
      721 aaaggcaagg ttcgctaacc ttaccccgat tgtttatgct tcccagcatt caatctatcc
      781 ccgtttatgg gtttctcttt caccctacaa agataacctc atgggggaaa aatgtccaag
      841 aatatggggt aaaaactatc aagtcggtag aaaataagta tctttgaagt acatttttag
      901 tagaggtact ggtatgccta gacgaagcag ataggcaaaa ataaagccgc tggagatgtc
      961 ggatgtccgt caattaactc cagcggcttg tattttggta actctcccgt atcggtcggc
     1021 taccgtttgg tcagcaacaa aggtagtact ttattgtcgc aaatccaaat gttttcccct
     1081 ttatttgtgc atttacagaa catttgctaa cttcgcacct atgcagtatg gtgatagcac
     1141 actagcaccc taaagggtgc gtgtgtaagg ggacaagccc ccttaacccc ctgtcagccg
     1201 gctgtcaccg gctgttatcg attgtcacaa aaatgttaac ttatggtaca agcagtgaag
     1261 ccggggagtg agattcacaa ctttagggaa aaagagttgg actatgttcg tcccgaactt
     1321 agtcatttga atgaaagctg ggttggagat agcatctccc atcggctgga aagtgcgaaa
     1381 caaagatatc tcgatacggt tgggcagaag atgcaggcta aagccgcacc catacgagag
     1441 ggagtaatag taatcaaaca agaaaccacc atgcaggaac tccagcagtt tgccacggtc
     1501 tgcaaagaac gtttcggtat cgaagcattt caaatccata tacacaagga cgaaggatac
     1561 atgaacgcaa agcaatggac acctaacctt catgcccatg tagttttcga ttggacgcag
     1621 ccgaatggga aaagtgtgcg tttatcgcgt gatgacatgg cagaactcca aaccatagca
     1681 tctgaaacac tgggcatgga acgtggcgtt tcttctgacc gcaaacactt atcggctatg
     1741 cagtacaaga ccgaatgtgc gaaagaacag cttcaggaac tatcaaacga tatatccagt
     1801 gcattagaca aacacaagga cgtacaaaac cagcttcttc agcttcagaa agaactacgt
     1861 tccattgaaa caaagaagaa cgtccaaaaa ctcatttcta aggcttcaga gaagttttac
     1921 ggcttgattg gaaaaacagt caacgatagg gaaaaggatg ccttaaaagc caaagtaaag
     1981 gctttagagg gggaaaatga acagctatcc gatagactgg gaaaggctat acttgaaaaa
     2041 gagcaaaacg gcacaaaggc attcaaagcc gagaatgaca aggagtatta tagacaacaa
     2101 atggacaacg caaggacaac cagtaaccga ttaaggacgg agaaccaaga actaaagacc
     2161 gaaaccaagg aattgaaaaa agaacttggt aagatgaaag acttgttcaa ttccgaacaa
     2221 ctggaggctt taaggcatca tttcccaaac atatcaaaag ctatggaaga ggggaaagac
     2281 ctactcaagc aaatcaccag aagcagaggt ttcggtatgg gtatgtaacc cccccccccc
     2341 cccccaaagg ggggagcgac caaacggcag cctctctcaa tggagtgtta cgtcgttcgg
     2401 attcggaaga aattttgcag ggttcggaaa acggttgtgt gcttattcta aaaaaagttt
     2461 atggtgtggc gctcgtcggg acgggtggtc ccgccccttg ccgctgggcg ctccccgacc
     2521 gatgattttt aagtgactga ttttgtgctg ttttgggggt atattaagaa tagaagaaat
     2581 agaataagtt aagtacttga tacacaatat agggcatttt ccatattgga aattctcatt
     2641 ttccaatcta gaaaatactg atttcctaat ataatactaa acaggaaaat aatatttccc
     2701 ttaatattgt ttttatggaa aataatagtt tacttt
//
