LOCUS       CP103168                4207 bp    DNA     circular BCT 29-AUG-2022
DEFINITION  Bacteroides caccae strain BFG-474 plasmid unnamed2, complete
            sequence.
ACCESSION   CP103168
VERSION     CP103168.1
DBLINK      BioProject: PRJNA646575
            BioSample: SAMN30323379
KEYWORDS    .
SOURCE      Bacteroides caccae
  ORGANISM  Bacteroides caccae
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1  (bases 1 to 4207)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4207)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 256x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/22/2022 19:39:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,387
            CDSs (total)                      :: 4,297
            Genes (coding)                    :: 4,024
            CDSs (with protein)               :: 4,024
            Genes (RNA)                       :: 90
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 273
            CDSs (without protein)            :: 273
            Pseudo Genes (ambiguous residues) :: 0 of 273
            Pseudo Genes (frameshifted)       :: 206 of 273
            Pseudo Genes (incomplete)         :: 78 of 273
            Pseudo Genes (internal stop)      :: 20 of 273
            Pseudo Genes (multiple problems)  :: 25 of 273
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4207
                     /organism="Bacteroides caccae"
                     /mol_type="genomic DNA"
                     /strain="BFG-474"
                     /host="Homo sapiens"
                     /db_xref="taxon:47678"
                     /plasmid="unnamed2"
                     /geo_loc_name="USA: Bethesda"
                     /collection_date="2005-11-16"
     gene            join(3960..4207,1..4)
                     /locus_tag="NXW23_21905"
     CDS             join(3960..4207,1..4)
                     /locus_tag="NXW23_21905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVQ98846.1"
                     /translation="MEALSVREYRNNLAASFTKADNGEQVLIRRKNEIYALVKVGREDL
                     MITPELQARIDKAREEIKSGKCVTLKSSEDIDAYFDSL"
                     /name="hypothetical protein"
     gene            1..276
                     /locus_tag="NXW23_21910"
     CDS             1..276
                     /locus_tag="NXW23_21910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0004519 - endonuclease activity [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YoeB family toxin"
                     /protein_id="UVQ98847.1"
                     /translation="MMYTIRVSDGVDKVIAKWKKSNPNLFKKYKKIYKELLEHPKTGLG
                     HPEALRGGGDITWSRHITAHDRIIYDIYEEVVEVYILEVEGHYNDK"
                     /name="type II toxin-antitoxin system YoeB family toxin"
     gene            287..484
                     /locus_tag="NXW23_21915"
     CDS             287..484
                     /locus_tag="NXW23_21915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007209655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVQ98848.1"
                     /translation="MVEYCVYWLENGEPMHEVFSSLAAAEMYSCAIRGKENIEWVEVSE
                     EETIDLDELEDMFPDDFCGV"
                     /name="hypothetical protein"
     gene            972..1766
                     /locus_tag="NXW23_21920"
     CDS             972..1766
                     /locus_tag="NXW23_21920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="UVQ98849.1"
                     /translation="MIGKGKSISHGVAALEYDLAKEINGQAVATEIARHELYGCTGAEM
                     VQEMKPYHIDFPNVKNNCLRFEVSPSIEESATFTDADWAELGNDFMQRMGLANHQYIII
                     RHSGTESKKEQAHLHILANRVSLSGELYRDNWIGKKATEAANAIAKERNFVQSQDIGKV
                     NKAEIKEAMDGVLKKMQGFDFTKFKEELGKRGFKVREARASTGKLNGYYVTARSGTEYK
                     ASEIGKGYTLAHIERTQSKLKCNSMNISHGNKLTPGSGSFQR"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1723..2193
                     /locus_tag="NXW23_21925"
     CDS             1723..2193
                     /locus_tag="NXW23_21925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVQ98850.1"
                     /translation="METNSHPEAAASNVKQGQYSPRKRKDTTPRVNPQLAVELVYQELK
                     RVEVYTKRIEDATARKVQIDGKSLESAENRLKNVLADFERQGYRMKNGGYVDKRISFYS
                     ILCAVISLLFACFMCYLWTDAAKDRDNYKQYYEYYQEQAGCSQRPGQLQAVL"
                     /name="hypothetical protein"
     gene            2256..2486
                     /locus_tag="NXW23_21930"
     CDS             2256..2486
                     /locus_tag="NXW23_21930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005683050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="charged multivesicular body protein 2b-B"
                     /protein_id="UVQ98844.1"
                     /translation="MGTTEHEEPRFFFILNKGAKSGGEITHAVLNGSIVSKPAGWDAFH
                     GLALAREKLSSEEIQQQMKELGVEMEIVPLI"
                     /name="charged multivesicular body protein 2b-B"
     gene            complement(2523..3548)
                     /locus_tag="NXW23_21935"
     CDS             complement(2523..3548)
                     /locus_tag="NXW23_21935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008657007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="UVQ98845.1"
                     /translation="MKKKLPITKNKDVVVSWVYTWSKQQDMSIHEQRIVLRILEACQAE
                     LKGVKLKDYAGTKRKFEHGLWDVDAQMHVSDVIFSGRDYNEIIAALDSLAGRFFTYEDD
                     EEWWKCGFISNPKYKKRTGIITFRVSNDLWDVFTKFAKGYREFELNKALALPTGYSLRF
                     YMLMSGQVYPLDISLENLKDRLGIPADKYKDKNGKDRIDHFEERVLKPAKAALDESCPY
                     TFNYVKVRENPNNKRSKVTGFRFYPVYQPQFRDEELEGKELQAKVTARYQIDSHVYEYL
                     RYSCGFTSEEINRNKETFITAQEKITDLIGELALLNGKSREKNNPKGWIINALKGKIKD
                     K"
                     /name="replication initiation protein"
ORIGIN
        1 atgatgtaca caattagggt ttccgacggg gtggataagg tgattgccaa atggaagaaa
       61 tcaaacccca atttgttcaa gaagtataag aaaatctaca aagaattgtt agagcaccct
      121 aagactgggc ttgggcatcc cgaagcgtta aggggcggtg gggatattac atggtctcga
      181 cacattaccg cccatgaccg gataatctat gacatttacg aggaagtggt agaggtctac
      241 atcttggagg tagaggggca ttacaacgat aaatgataaa actgttatgg tcgaatattg
      301 tgtttactgg ttagagaacg gcgagcctat gcacgaggtg ttctcttctc ttgccgccgc
      361 cgagatgtac tcatgtgcga taagagggaa agaaaacatt gaatgggtgg aggtgtccga
      421 agaagaaacc attgatttgg acgaactgga agacatgttc ccggatgact tctgcggcgt
      481 gtaatcccct tgggtagaaa tggggtagaa tttgttaggc tgtgggggat tttctaacac
      541 gccggggctt tttgctgggc ggttggcgtg gatgtattcc catgcggcat gtgtatatat
      601 agcaagaagt gtccttgtcg gacaattctt gcttttctcg ctttgctcaa aaagatttta
      661 agattacctt tgtggcatgg aactaagacg gaacgaaaag attacattcc ggtgtaccga
      721 acttgaaaag gacgcacttg cggagcaggc agcccggtgc agtctaagcg tatcggaata
      781 ctgccggagt ttgtcccttg ggggcgccca agggagaggt acaccgagga ggaacggcag
      841 cttctccggg acatagcccg gttgaaagga acgctccaac ggctgaacaa ctacttcggt
      901 ggtcgccagt accgggaagt gttcgaggag aaccgggcac taattacaga gctcaaaaaa
      961 atactctcac gatgataggg aaagggaaaa gcatatcaca tggtgtggcg gcattggagt
     1021 acgacctcgc caaagagata aacgggcagg cagtagccac cgagatagcc cggcatgaac
     1081 tttatgggtg tactggtgcg gaaatggtgc aggaaatgaa accgtatcac attgattttc
     1141 cgaacgtaaa aaacaactgc ctacgtttcg aggtcagccc ctcgatagag gaaagcgcca
     1201 cctttacgga tgcggactgg gcggaacttg gtaacgactt catgcagcgc atggggttgg
     1261 cgaaccacca gtacatcatc atccggcaca gcggtacgga gagcaagaaa gagcaagccc
     1321 acctgcacat actggcaaac cgggtttccc tttccgggga actgtaccgg gacaactgga
     1381 tagggaaaaa ggcaacggaa gccgccaatg ccatagccaa ggaacggaac tttgtacagt
     1441 cgcaggacat tggcaaagtc aacaaagcgg aaatcaagga agccatggac ggcgtattga
     1501 agaagatgca gggctttgac tttaccaaat tcaaggaaga acttggtaag agaggtttta
     1561 aagtccggga agccagggca agcaccggga aacttaacgg ctactatgtc acagcccgaa
     1621 gcggtacgga gtataaggca agcgagatag ggaaaggcta cactctcgcc catatcgagc
     1681 ggacacaaag caaactgaag tgcaactcaa tgaacatatc tcatggaaac aaactcacac
     1741 ccggaagcgg cagcttccaa cgttaagcag ggacagtaca gcccccggaa aagaaaagat
     1801 acaacgccaa gggtaaaccc gcagcttgcg gtagaactgg tgtatcaaga actaaagcgt
     1861 gttgaagtct atacgaagcg catagaggac gcaacagccc gaaaggtaca aatagacggg
     1921 aaaagccttg aaagtgccga aaatcgccta aaaaacgtgt tggcggactt tgaacggcag
     1981 gggtacagaa tgaaaaacgg cggttatgtg gacaaacgaa tttcgttcta ctcaatcctt
     2041 tgtgctgtta tctccctatt gttcgcttgt ttcatgtgct atctttggac ggatgcagcc
     2101 aaagaccggg acaactacaa gcagtattat gaatactacc aagagcaggc cggatgcagc
     2161 caaagaccgg gacaactaca agcagtatta tgaatactac caagagcagg caagggaaca
     2221 aaaggggaat aaataaacat ctaactttac gaattatggg aacaacggaa cacgaagaac
     2281 cccggttctt cttcatactg aacaagggtg cgaagtccgg cggcgaaatc acccatgccg
     2341 tcctaaacgg tagtatcgtt tcgaagccgg caggctggga cgcctttcat gggcttgcac
     2401 tggcgagaga gaaactaagc agcgaggaaa tacaacagca gatgaaagaa cttggtgtag
     2461 aaatggaaat cgttcctctg atttgacaag attacccgga gtgtttcagc cgggtaatct
     2521 tgttacttat ccttgatttt ccctttaagg gcgtttataa tccacccttt cggattgttc
     2581 ttttctcgtg attttccgtt taggagagcc agttctccga taaggtcggt tatcttttct
     2641 tgtgccgtta tgaatgtctc tttgttccgg tttatctctt ccgatgtgaa gccgcaggaa
     2701 taacggaggt actcgtacac atggctgtct atctgatatc gtgctgtaac ctttgcttgc
     2761 aattctttcc cttccagttc ttcatctctg aactgtggtt gatagaccgg gtagaaccta
     2821 aacccggtca ccttgctacg tttgttgttt gggttttcac gcactttcac gtagttgaaa
     2881 gtgtatgggc agctctcatc aagcgcagcc tttgctggtt tcaaaactct ttcctcaaaa
     2941 tgatctattc tgtcttttcc gttcttgtcc ttgtatttgt ccgcaggtat gccaagacgg
     3001 tctttcaagt tttcaaggga tatatccaaa gggtacacct gcccactcat taacatgtaa
     3061 aacctaaggg aatacccagt aggtagcgca agagccttgt ttaactcaaa ttctctgtac
     3121 cccttggcga acttggtaaa cacatcccaa aggtcgttag acacacgaaa ggttataatg
     3181 ccagtgcgtt ttttatattt tgggttagat ataaatccgc acttccacca ttcctcgtca
     3241 tcttcgtaag taaaaaaacg tcctgccaaa gaatcgagtg cggctatgat ttcattgtaa
     3301 tcacgtccgg aaaaaataac gtcagataca tgcatttgtg catcaacatc ccaaagtcca
     3361 tgctcaaact tgcgtttcgt gcctgcataa tctttcagtt ttactccctt tagttcagct
     3421 tggcacgctt ccagtatgcg aagaactatt ctttgttcgt gtatggacat gtcttgctgt
     3481 tttgaccatg tatataccca tgaaacaaca acatctttat tcttggtaat aggtagtttc
     3541 tttttcataa acgattgatt tgctgcaaat atacacaatc cccacattaa aacaaaaaag
     3601 aggggtaaaa ctcccaaagt gtggggacta atttactttt aaactcccaa agtgtgggga
     3661 ctaaactccc aaagtgtggg gaaacacatg ttctaatccc tttatttatg ggcgtttgcg
     3721 aagaagtgat agagcatatt acagacgatg cttataacag acaaggggaa tttatagagc
     3781 taagtggttg atttactgtc ggaaaaagaa aaacgatagg gaaaaagagc aaagcaaaac
     3841 caaccaacgg gcggtaggat tggaaacggg tttttatggc gtgtacacgt ttgtgtacaa
     3901 aatgtttgta ttttattgaa atatagctat ctttgtgctg aatttaaaag caaacagata
     3961 tggaagcatt atcagtaaga gaataccgta acaacctcgc agcgtctttc accaaagctg
     4021 acaatggcga gcaggtacta attcgcagga aaaacgagat ttacgctttg gtaaaagttg
     4081 gtcgtgaaga tttgatgata accccggagc tgcaagcaag gattgacaag gcaagggaag
     4141 aaatcaaatc cggaaagtgt gttaccctca aaagcagtga ggatattgac gcttatttcg
     4201 atagtct
//
