LOCUS       CP103157                2720 bp    DNA     circular BCT 29-AUG-2022
DEFINITION  Bacteroides thetaiotaomicron strain BFG-576 plasmid unnamed2,
            complete sequence.
ACCESSION   CP103157
VERSION     CP103157.1
DBLINK      BioProject: PRJNA646575
            BioSample: SAMN30323459
KEYWORDS    .
SOURCE      Bacteroides thetaiotaomicron
  ORGANISM  Bacteroides thetaiotaomicron
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1  (bases 1 to 2720)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2720)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 63x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/22/2022 19:49:08
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,268
            CDSs (total)                      :: 5,180
            Genes (coding)                    :: 4,689
            CDSs (with protein)               :: 4,689
            Genes (RNA)                       :: 88
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 491
            CDSs (without protein)            :: 491
            Pseudo Genes (ambiguous residues) :: 0 of 491
            Pseudo Genes (frameshifted)       :: 431 of 491
            Pseudo Genes (incomplete)         :: 72 of 491
            Pseudo Genes (internal stop)      :: 11 of 491
            Pseudo Genes (multiple problems)  :: 20 of 491
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2720
                     /organism="Bacteroides thetaiotaomicron"
                     /mol_type="genomic DNA"
                     /strain="BFG-576"
                     /host="Homo sapiens"
                     /db_xref="taxon:818"
                     /plasmid="unnamed2"
                     /geo_loc_name="USA: Bethesda"
                     /collection_date="2013-05-26"
     gene            1..1104
                     /locus_tag="NXX83_26335"
     CDS             1..1104
                     /locus_tag="NXX83_26335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="UVQ72145.1"
                     /translation="MGATSIHVQAVKPGSEIHNFREKELDYVRPELSHLNESWVGDSIS
                     HRLESAKQRYLDTVGQKMQAKAAPIREGVIVIKQETTMQELQQFATVCKERFGIEAFQI
                     HIHKDEGYMNAKQWTPNLHAHVVFDWTQPNGKSVRLSRDDMAELQTIASETLGMERGVS
                     SDRKHLSAMQYKTECAKEQLQELSNDISSALDKYKDAQNQLLQLQKELRSIETKKNVQK
                     LISKASEKFYGLIGKTVNDREKDALKAKVKTLEGENEQLSDRLGKAILEKERNSTKAFK
                     AENDKEYYRQQMDNARTTSNLLRTENQKLKAETKELKKELGKMKDLFNSEQLEALRHHF
                     PNISKAMEEGKDLFKQITRSRGFGMGM"
                     /name="mobilization protein"
     gene            1545..2135
                     /locus_tag="NXX83_26340"
     CDS             1545..2135
                     /locus_tag="NXX83_26340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_process:
                     GO:0006260 - DNA replication [Evidence IEA]; GO_process:
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="UVQ72144.1"
                     /translation="MENKKAVKLTDFQKNEENPFMKQAIEGIENHVVKKYKSNSGGDKR
                     AVVALADTETGEVFKTSFIRQIEVDEEQFTKLYLSNFAAFFDLSQAAIRVFGYFMTCMK
                     PKNDLIIFNRKKCLEYTKYKTDKAVYKGLAELVKAEIIARGPADNLWFINPLIVFNGDR
                     VTFAKTYVRKKTLAAQKKEEAEKRQLSLGFDEQ"
                     /name="replication/maintenance protein RepL"
     Typing          1513..2125
                     /name="rep_cluster_1868"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.188"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          2..1101
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.728"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgggagcaa caagtattca tgtacaagca gtgaagccgg ggagcgagat tcacaacttt
       61 agggaaaaag agttggacta tgttcgtccc gaacttagtc atttgaatga aagctgggtt
      121 ggagatagca tttcccatcg gctggagagt gcaaaacaaa gatatctcga tacggttggg
      181 cagaagatgc aggctaaagc cgcacccata cgagagggag taatagtaat caaacaagaa
      241 accactatgc aggaactcca gcagtttgcc acggtctgca aagaacgttt cggtatcgaa
      301 gcgtttcaaa tccatataca caaggacgaa ggatacatga acgcaaagca gtggacacct
      361 aaccttcatg cccatgtagt tttcgattgg acgcagccga atgggaaaag tgtgcgttta
      421 tcgcgtgatg acatggcaga actccaaacc atagcatctg aaacactggg catggaacgt
      481 ggcgtttctt ctgaccgcaa acacttatcg gctatgcagt acaagaccga atgtgcgaaa
      541 gaacagcttc aggaactatc caacgatata tccagtgcat tagacaaata caaggacgca
      601 caaaaccagc ttcttcagct tcagaaggaa ctacgttcca ttgaaacaaa gaagaacgtc
      661 caaaaactca tttctaaggc ttcagagaag ttttacggct tgattggaaa aacagtcaac
      721 gatagggaaa aggatgcctt aaaagccaaa gtaaagactt tagaggggga aaatgaacaa
      781 ctatccgata gactgggaaa ggctatactt gaaaaagagc gaaatagcac aaaggcattc
      841 aaagccgaga atgacaagga gtattataga caacaaatgg acaacgcaag gacaaccagt
      901 aacctattaa ggacggagaa ccaaaaacta aaagccgaaa ccaaggagtt gaaaaaagaa
      961 cttggtaaga tgaaagactt gttcaattcc gaacaactgg aggctttaag gcatcatttc
     1021 ccaaacatat caaaagctat ggaagagggg aaagacctat tcaagcaaat caccagaagc
     1081 agaggtttcg gcatgggtat gtaacccccc cccccgcccc caaaggggga gcgaccaaac
     1141 ggcagcctct ctcaatggag tgttacaccg ttcggattca gaaaacattt tgcagggttc
     1201 ggaaaacggt tgtgtgctta ttctaaaaaa agtttatggt gtggcgctcg tcgggacggg
     1261 tggtcccgcc ccttgccgct aggcgctccc cgaccgatga tttttaagtg actgattttg
     1321 tgctgttttg ggggtatatt aagaataaaa gaaatagaat aagttaagta cttgatacac
     1381 aatatagggc attttccata ttggaaattc tcattttcca atctagaaaa tactgatttc
     1441 ctaatatgat actaaatagg aaaataatat ttcccttaat attgttttta tggaaaataa
     1501 tagtttactt tgtggagaat aatatttccc aaaaacatat caaaatggaa aataaaaaag
     1561 cagttaagtt aaccgatttt caaaagaacg aagaaaatcc ttttatgaaa caagctatag
     1621 aaggtattga aaatcatgtt gttaaaaagt ataagagtaa tagtggtggc gataagagag
     1681 ctgtagtagc tttagccgac actgaaactg gagaagtgtt taagacttcg tttatccgtc
     1741 aaatagaagt agatgaagaa caattcacta aattgtatct ttctaacttt gctgcattct
     1801 ttgacctatc acaagcagct attcgggttt ttggttactt tatgacctgc atgaaaccca
     1861 aaaatgattt aatcattttc aatagaaaaa aatgcctaga atataccaaa tacaaaacag
     1921 acaaagccgt ttataaagga cttgcagaac ttgtaaaagc tgaaatcata gcccgaggac
     1981 cagccgataa tctttggttt attaatcctc tgatagtatt caatggtgac cgagtgacat
     2041 ttgctaaaac atacgttcgg aaaaagactt tagctgccca aaagaaagaa gaagcagaga
     2101 aacgacaatt atcacttggc tttgatgaac agtaacactc cattgagtga agctgccgtt
     2161 tggtcgctcc ccctttgggg gcgggggggg atagataaag ttcctctatg taaagttata
     2221 atggggattg tttatgcttc ccagcattca atctatcccc gtttatgggt ttctctttca
     2281 ccctacaaag ataacctcat gggggaaaaa tgtccaagaa tatggggtaa aaactatcaa
     2341 gtcggtagaa aataagtatc tttgaagtac atttttagta gaggtactgg tgtgcctagg
     2401 cgaagcagat aggcaaaaat aaagccgctg gagatgtcgg atgtccgtca attaactcca
     2461 gcggcttgta ttttggtaac tctcccgtat cggtcagcta ccgtttggtc agcaacaaag
     2521 gtagtacttt attatcgcaa atccaaatgt ttttcccttt atttgtgcat ttacaaaaca
     2581 ttcactaact tcgcacctat gcagtatggt gatagcacac tagcacccta aagagtgcgt
     2641 gtgtaagggg acaagccccc ttaaccccct gtcagccggc tgtcaccggc tgttatcgat
     2701 tgtcacaaaa atgttaactt
//
