LOCUS       CP103156                4162 bp    DNA     circular BCT 29-AUG-2022
DEFINITION  Bacteroides thetaiotaomicron strain BFG-576 plasmid unnamed1,
            complete sequence.
ACCESSION   CP103156
VERSION     CP103156.1
DBLINK      BioProject: PRJNA646575
            BioSample: SAMN30323459
KEYWORDS    .
SOURCE      Bacteroides thetaiotaomicron
  ORGANISM  Bacteroides thetaiotaomicron
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1  (bases 1 to 4162)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4162)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 63x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/22/2022 19:49:08
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,268
            CDSs (total)                      :: 5,180
            Genes (coding)                    :: 4,689
            CDSs (with protein)               :: 4,689
            Genes (RNA)                       :: 88
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 491
            CDSs (without protein)            :: 491
            Pseudo Genes (ambiguous residues) :: 0 of 491
            Pseudo Genes (frameshifted)       :: 431 of 491
            Pseudo Genes (incomplete)         :: 72 of 491
            Pseudo Genes (internal stop)      :: 11 of 491
            Pseudo Genes (multiple problems)  :: 20 of 491
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4162
                     /organism="Bacteroides thetaiotaomicron"
                     /mol_type="genomic DNA"
                     /strain="BFG-576"
                     /host="Homo sapiens"
                     /db_xref="taxon:818"
                     /plasmid="unnamed1"
                     /geo_loc_name="USA: Bethesda"
                     /collection_date="2013-05-26"
     gene            1..198
                     /locus_tag="NXX83_26300"
     CDS             1..198
                     /locus_tag="NXX83_26300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007209655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVQ72140.1"
                     /translation="MVEYCVYWLENGEPMHEVFSSLAAAEMYSCAIRGKENIEWVEVSE
                     EETIDLDELEDMFPDDFCGV"
                     /name="hypothetical protein"
     gene            687..1481
                     /locus_tag="NXX83_26305"
     CDS             687..1481
                     /locus_tag="NXX83_26305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="UVQ72141.1"
                     /translation="MIGKGKSISHGVAALEYDLAKEINGQAVATEIARHELYGCTGAEM
                     VQEMKPYHIDFPNVKNNCLRFEVSPSIEESATFTDADWAELGNDFMQRMGLANHQYIII
                     RHSGTESKKEQAHLHILANRVSLSGELYRDNWIGKKATEAANAIAKERNFVQSQDIGKV
                     NKAEIKEAMDGVLKKMQGFDFTKFKEELGKRGFKVREARASTGKLNGYYVTARSGTEYK
                     ASEIGKGYTLAHIERTQSKLKCNSMNISHGNKLTPGSGSFQR"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1438..1890
                     /locus_tag="NXX83_26310"
     CDS             1438..1890
                     /locus_tag="NXX83_26310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVQ72142.1"
                     /translation="METNSHPEAAASNVKQGQYSPRKRKDTTPRVNPQLAVELVYQELK
                     RVEVYTKRIEDATARKVQIDGKSLESAENRLKNVLADFERQGYRMKNGGYVDKRISFYS
                     ILCAVISLLFACFMCYLWTDAAKDRDNYKQYYEYYQEQAREQKGNK"
                     /name="hypothetical protein"
     gene            1910..2140
                     /locus_tag="NXX83_26315"
     CDS             1910..2140
                     /locus_tag="NXX83_26315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005683050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="charged multivesicular body protein 2b-B"
                     /protein_id="UVQ72143.1"
                     /translation="MGTTEHEEPRFFFILNKGAKSGGEITHAVLNGSIVSKPAGWDAFH
                     GLALAREKLSSEEIQQQMKELGVEMEIVPLI"
                     /name="charged multivesicular body protein 2b-B"
     gene            complement(2177..3217)
                     /locus_tag="NXX83_26320"
     CDS             complement(2177..3217)
                     /locus_tag="NXX83_26320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008657007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="UVQ72137.1"
                     /translation="MKKKLPITKNKDVVVSWVYTWSKQQDMSIHEQRIVLRILEACQAE
                     LKGVKLKDYAGTKRKFEHGLWDVDAQMHVSDVIFSGRDYNEIIAALDSLAGRFFTYEDD
                     EEWWKCGFISNPKYKKRTGIITFRVSNDLWDVFTKFAKGYREFELNKALALPTGYSLRF
                     YMLMSGQVYPLDISLENLKDRLGIPADKYKDKNGKDRIDHFEERVLKPAKAALDESCPY
                     TFNYVKVRENPNNKRSKVTGFRFYPVYQPQFRDEELEGKELQAKVTARYQIDSHVYEYL
                     RYSCGFTSEEINRNKETFITAQDITAQEKITDLIGELALLNGKSREKNNPKGWIINALK
                     GKIKDK"
                     /name="replication initiation protein"
     gene            3629..3880
                     /locus_tag="NXX83_26325"
     CDS             3629..3880
                     /locus_tag="NXX83_26325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVQ72138.1"
                     /translation="MEALSVREYRNNLAASFTKADNGEQVLIRRKNEIYALVKVGREDL
                     MITPELQARIDKAREEIKSGKCVTLKSSEDIDAYFDSL"
                     /name="hypothetical protein"
     gene            3877..4152
                     /locus_tag="NXX83_26330"
     CDS             3877..4152
                     /locus_tag="NXX83_26330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0004519 - endonuclease activity [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YoeB family toxin"
                     /protein_id="UVQ72139.1"
                     /translation="MMYTIRVSDGVDKVIAKWKKSNPNLFKKYKKIYKELLEHPKTGLG
                     HPEALRGGGDITWSRHITAHDRIIYDIYEEVVEVYILEVEGHYNDK"
                     /name="type II toxin-antitoxin system YoeB family toxin"
ORIGIN
        1 atggtcgaat attgtgttta ctggttagag aacggcgagc ctatgcacga ggtgttctct
       61 tctcttgccg ccgccgagat gtactcatgt gcgataagag ggaaagaaaa cattgaatgg
      121 gtggaggtgt ccgaagaaga aaccattgat ttggacgaac tggaagacat gttcccggat
      181 gacttctgcg gcgtgtaatc cccttgggta gaaatggggt agaatttgtt aggctgtgtg
      241 gggattttct aacacgccgg ggctttttgc tgggcggttg gcgtggatgt attcccatgc
      301 ggcatgtgta tatatagcaa gaagtgtcct tgtcggacaa ttcttgcttt tctcgctttg
      361 ctcaaaaaga ttttaagatt acctttgtgg catggaacta agacggaacg aaaagattac
      421 attccggtgt accgaacttg aaaaggacgc acttgcggag caggcagccc ggtgcagtct
      481 aagcgtatcg gaatactgcc ggagtttgtc ccttgggggc gcccaaggga gaggtacacc
      541 gaggaggaac ggcagcttct ccgggacata gcccagttga aaggaacgct ccaacggctg
      601 aacaactact tcggtggtcg ccagtaccgg gaagtgttcg aggagaaccg ggcactaatt
      661 acagagctca aaaaaatact ctcacgatga tagggaaagg gaaaagcata tcacatggtg
      721 tggcggcatt ggagtacgac ctcgccaaag agataaacgg gcaggcagta gccaccgaga
      781 tagcccggca tgaactttat gggtgtactg gtgcggaaat ggtgcaggaa atgaaaccgt
      841 atcacattga ttttccgaac gtaaaaaaca actgcctacg tttcgaggtc agcccctcga
      901 tagaggaaag cgccaccttt acggatgcgg actgggcgga acttggtaac gacttcatgc
      961 agcgcatggg gttggcgaac caccagtaca tcatcatccg gcacagcggt acggagagca
     1021 agaaagagca agcccacctg cacatactgg caaaccgggt ttccctttcc ggggaactgt
     1081 accgggacaa ctggataggg aaaaaggcaa cggaagccgc caatgccata gccaaggaac
     1141 ggaactttgt acagtcgcag gacattggca aagtcaacaa agcggaaatc aaggaagcca
     1201 tggacggcgt attgaagaag atgcagggct ttgactttac caaattcaag gaagaacttg
     1261 gtaagagagg ttttaaagtc cgggaagcca gggcaagcac cgggaaactt aacggctact
     1321 atgtcacagc ccgaagcggt acggagtata aggcaagcga gatagggaaa ggctacactc
     1381 tcgcccatat cgagcggaca caaagcaaac tgaagtgcaa ctcaatgaac atatctcatg
     1441 gaaacaaact cacacccgga agcggcagct tccaacgtta agcagggaca gtacagcccc
     1501 cggaaaagaa aagatacaac gccaagggta aacccgcagc ttgcggtaga actggtgtat
     1561 caagaactaa agcgtgttga agtctatacg aagcgcatag aggacgcaac agcccgaaag
     1621 gtacaaatag acgggaaaag ccttgaaagt gccgaaaatc gcctaaaaaa cgtgttggcg
     1681 gactttgaac ggcaggggta cagaatgaaa aacggcggtt atgtggacaa acgaatttcg
     1741 ttctactcaa tcctttgtgc tgttatctcc ctattgttcg cttgtttcat gtgctatctt
     1801 tggacggatg cagccaaaga ccgggacaac tacaagcagt attatgaata ctaccaagag
     1861 caggcaaggg aacaaaaggg gaataaataa acatctaact ttacgaatta tgggaacaac
     1921 ggaacacgaa gaaccccggt tcttcttcat actgaacaag ggtgcgaagt ccggcggcga
     1981 aatcacccat gccgtcctaa acggtagtat cgtttcgaag ccggcaggct gggacgcctt
     2041 tcatgggctt gcactggcga gagagaaact aagcagcgag gaaatacaac agcagatgaa
     2101 agaacttggt gtagaaatgg aaatcgttcc tctgatttga caagattacc cggagtgttt
     2161 cagccgggta atcttgttac ttatccttga ttttcccttt aagggcgttt ataatccacc
     2221 ctttcggatt gttcttttct cgtgattttc cgtttaggag agccagttct ccgataaggt
     2281 cggttatctt ttcttgtgcc gttatgtctt gtgccgttat gaatgtctct ttgttccggt
     2341 ttatctcttc cgatgtgaag ccgcaggaat aacggaggta ctcgtacaca tggctgtcta
     2401 tctgatatcg tgctgtaacc tttgcttgca attctttccc ttccagttct tcatctctga
     2461 actgtggttg atagaccggg tagaacctaa acccggtcac cttgctacgt ttgttgtttg
     2521 ggttttcacg cactttcacg tagttgaaag tgtatgggca gctctcatca agcgcagcct
     2581 ttgctggttt caaaactctt tcctcaaaat gatctattct gtcttttccg ttcttgtcct
     2641 tgtatttgtc cgcaggtatg ccaagacggt ctttcaagtt ttcaagggat atatccaaag
     2701 ggtacacctg cccactcatt aacatgtaaa acctaaggga atacccagta ggtagcgcaa
     2761 gagccttgtt taactcaaat tctctgtacc ccttggcgaa cttggtaaac acatcccaaa
     2821 ggtcgttaga cacacgaaag gttataatgc cagtgcgttt tttatatttt gggttagata
     2881 taaatccgca cttccaccat tcctcgtcat cttcgtaagt aaaaaaacgt cctgccaaag
     2941 aatcgagtgc ggctatgatt tcattgtaat cacgtccgga aaaaataacg tcagatacat
     3001 gcatttgtgc atcaacatcc caaagtccat gctcaaactt gcgtttcgtg cctgcataat
     3061 ctttcagttt tactcccttt agttcagctt ggcacgcttc cagtatgcga agaactattc
     3121 tttgttcgtg tatggacatg tcttgctgtt ttgaccatgt atatacccat gaaacaacaa
     3181 catctttatt cttggtaata ggtagtttct ttttcataaa cgattgattt gctgcaaata
     3241 tacacaatcc ccacattaaa acaaaaaaga ggggtaaaac tcccaaagtg tggggactaa
     3301 tttactttta aactcccaaa gtgtggggac taaactccca aagtgtgggg aaacacatgt
     3361 tctaatccct ttatttatgg gcgtttgcga agaagtgata gagcatatta cagacgatgc
     3421 ttataacaga caaggggaat ttatagagct aagtggttga tttactgtcg gaaaaagaaa
     3481 aacgataggg aaaaagagca aagcaaaacc aaccaacggg cggtaggatt ggaaacgggt
     3541 ttttatggcg tgtacacgtt tgtgtacaaa atgtttgtat tttattgaaa tatagctatc
     3601 tttgtgctga atttaaaagc aaacagatat ggaagcatta tcagtaagag aataccgtaa
     3661 caacctcgca gcgtctttca ccaaagctga caatggcgag caggtactaa ttcgcaggaa
     3721 aaacgagatt tacgctttgg taaaagttgg tcgtgaagat ttgatgataa ccccggagct
     3781 gcaagcaagg attgacaagg caagggaaga aatcaaatcc ggaaagtgtg ttaccctcaa
     3841 aagcagtgag gatattgacg cttatttcga tagtctatga tgtacacaat tagggtttcc
     3901 gacggggtgg ataaggtgat tgccaaatgg aagaaatcaa accccaattt gttcaagaag
     3961 tataagaaaa tctacaaaga attgttagag caccctaaga ctgggcttgg gcatcccgaa
     4021 gcgttaaggg gcggtgggga tattacatgg tctcgacaca ttaccgccca tgaccggata
     4081 atctatgaca tttacgagga agtggtagag gtctacatct tggaggtaga ggggcattac
     4141 aacgataaat gataaaactg tt
//
