LOCUS       CP103134                4106 bp    DNA     circular BCT 29-AUG-2022
DEFINITION  Bacteroides ovatus strain BFG-299 plasmid unnamed4, complete
            sequence.
ACCESSION   CP103134
VERSION     CP103134.1
DBLINK      BioProject: PRJNA646575
            BioSample: SAMN30323268
KEYWORDS    .
SOURCE      Bacteroides ovatus
  ORGANISM  Bacteroides ovatus
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1  (bases 1 to 4106)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4106)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 175x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/22/2022 20:35:21
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,694
            CDSs (total)                      :: 5,602
            Genes (coding)                    :: 5,202
            CDSs (with protein)               :: 5,202
            Genes (RNA)                       :: 92
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 75
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 400
            CDSs (without protein)            :: 400
            Pseudo Genes (ambiguous residues) :: 0 of 400
            Pseudo Genes (frameshifted)       :: 276 of 400
            Pseudo Genes (incomplete)         :: 84 of 400
            Pseudo Genes (internal stop)      :: 70 of 400
            Pseudo Genes (multiple problems)  :: 28 of 400
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4106
                     /organism="Bacteroides ovatus"
                     /mol_type="genomic DNA"
                     /strain="BFG-299"
                     /host="Homo sapiens"
                     /db_xref="taxon:28116"
                     /plasmid="unnamed4"
                     /geo_loc_name="USA: Bethesda"
                     /collection_date="1991-06-06"
     gene            1..1026
                     /locus_tag="NXX44_28395"
     CDS             1..1026
                     /locus_tag="NXX44_28395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008657007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="UVQ67444.1"
                     /translation="MKKKLPITKNKDVVVSWVYTWSKQQDMSIHEQRIVLRILEACQAE
                     LKGVKLKDYAGTKRKFEHGLWDVDAQMHVSDVIFSGRDYNEIIAALDSLAGRFFTYEDD
                     EEWWKCGFISNPKYKKRTGIITFRVSNDLWDVFTKFAKGYREFELNKALALPTGYSLRF
                     YMLMSGQVYPLDISLENLKDRLGIPADKYKDKNGKDRIDHFEERVLKPAKAALDESCPY
                     TFNYVKVRENPNNKRSKVTGFRFYPVYQPQFRDEELEGKELQAKVTARYQIDSHVYEYL
                     RYSCGFTSEEINRNKETFITAQEKITDLIGELALLNGKSREKNNPKGWIINALKGKIKD
                     K"
                     /name="replication initiation protein"
     gene            complement(1063..1293)
                     /locus_tag="NXX44_28400"
     CDS             complement(1063..1293)
                     /locus_tag="NXX44_28400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005683050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="charged multivesicular body protein 2b-B"
                     /protein_id="UVQ67446.1"
                     /translation="MGTTEHEEPRFFFILNKGAKSGGEITHAVLNGSIVSKPAGWDAFH
                     GLALAREKLSSEEIQQQMKELGVEMEIVPLI"
                     /name="charged multivesicular body protein 2b-B"
     gene            complement(1313..1765)
                     /locus_tag="NXX44_28405"
     CDS             complement(1313..1765)
                     /locus_tag="NXX44_28405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVQ67445.1"
                     /translation="METNSHPEAAASNVKQGQYSPRKRKDTTPRVNPQLAVELVYQELK
                     RVEVYTKRIEDATARKVQIDGKSLESAENRLKNVLADFERQGYRMKNGGYVDKRISFYS
                     ILCAVISLLFACFMCYLWTDAAKDRDNYKQYYEYYQEQAREQKGNK"
                     /name="hypothetical protein"
     gene            complement(1722..2474)
                     /locus_tag="NXX44_28410"
     CDS             complement(1722..2474)
                     /locus_tag="NXX44_28410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="UVQ67447.1"
                     /translation="MIGKGKSISHGVAALEYDLAKEINGQAVATEIARHELYGCTGAEM
                     VQEMKPYHIDFPNVESATFTDADWAELGNDFMQRMGLANHQYIIIRHSGTESKKEQAHL
                     HILANRVSLSGELYRDNWIGKKATEAANAIAKERNFVQSQDIGKVNKAEIKEAMDGVLK
                     KMQGFDFTKFKEELGKRGFKVREARASTGKLNGYYVTARSGTEYKASEIGKGYTLAHIE
                     RTQSKLKCNSMNISHGNKLTPGSGSFQR"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2963..3160)
                     /locus_tag="NXX44_28415"
     CDS             complement(2963..3160)
                     /locus_tag="NXX44_28415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007209655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVQ67441.1"
                     /translation="MVEYCVYWLENGEPMHEVFSSLAAAEMYSCAIRGKENIEWVEVSE
                     EETIDLDELEDMFPDDFCGV"
                     /name="hypothetical protein"
     gene            complement(3171..3446)
                     /locus_tag="NXX44_28420"
     CDS             complement(3171..3446)
                     /locus_tag="NXX44_28420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0004519 - endonuclease activity [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YoeB family toxin"
                     /protein_id="UVQ67442.1"
                     /translation="MMYTIRVSDGVDKVIAKWKKSNPNLFKKYKKIYKELLEHPKTGLG
                     HPEALRGGGDITWSRHITAHDRIIYDIYEEVVEVYILEVEGHYNDK"
                     /name="type II toxin-antitoxin system YoeB family toxin"
     gene            complement(3443..3694)
                     /locus_tag="NXX44_28425"
     CDS             complement(3443..3694)
                     /locus_tag="NXX44_28425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVQ67443.1"
                     /translation="MEALSVREYRNNLAASFTKADNGEQVLIRRKNEIYALVKVGREDL
                     MITPELQARIDKAREEIKSGKCVTLKSSEDIDAYFDSL"
                     /name="hypothetical protein"
ORIGIN
        1 atgaaaaaga aactacctat taccaagaat aaagatgttg ttgtttcatg ggtatataca
       61 tggtcaaaac agcaagacat gtccatacac gaacaaagaa tagttcttcg catactggaa
      121 gcgtgccaag ctgaactaaa gggagtaaaa ctgaaagatt atgcaggcac gaaacgcaag
      181 tttgagcatg gactttggga tgttgatgca caaatgcatg tatctgacgt tattttttcc
      241 ggacgtgatt acaatgaaat catagccgca ctcgattctt tggcaggacg tttttttact
      301 tacgaagatg acgaggaatg gtggaagtgc ggatttatat ctaacccaaa atataaaaaa
      361 cgcactggca ttataacctt tcgtgtgtct aacgaccttt gggatgtgtt taccaagttc
      421 gccaaggggt acagagaatt tgagttaaac aaggctcttg cgctacctac tgggtattcc
      481 cttaggtttt acatgttaat gagtgggcag gtgtaccctt tggatatatc ccttgaaaac
      541 ttgaaagacc gtcttggcat acctgcggac aaatacaagg acaagaacgg aaaagacaga
      601 atagatcatt ttgaggaaag agttttgaaa ccagcaaagg ctgcgcttga tgagagctgc
      661 ccatacactt tcaactacgt gaaagtgcgt gaaaacccaa acaacaaacg tagcaaggtg
      721 accgggttta ggttctaccc ggtctatcaa ccacagttca gagatgaaga actggaaggg
      781 aaagaattgc aagcaaaggt tacagcacga tatcagatag acagccatgt gtacgagtac
      841 ctccgttatt cctgcggctt cacatcggaa gagataaacc ggaacaaaga gacattcata
      901 acggcacaag aaaagataac cgaccttatc ggagaactgg ctctcctaaa cggaaaatca
      961 cgagaaaaga acaatccgaa agggtggatt ataaacgccc ttaaagggaa aatcaaggat
     1021 aagtaacaag attacccggc tgaaacactc cgggtaatct tgtcaaatca gaggaacgat
     1081 ttccatttct acaccaagtt ctttcatctg ctgttgtatt tcctcgctgc ttagtttctc
     1141 tctcgccagt gcaagcccat gaaaggcgtc ccagcctgcc ggcttcgaaa cgatactacc
     1201 gtttaggacg gcatgggtga tttcgccgcc ggacttcgca cccttgttca gtatgaagaa
     1261 gaaccggggt tcttcgtgtt ccgttgttcc cataattcgt aaagttagat gtttatttat
     1321 tccccttttg ttcccttgcc tgctcttggt agtattcata atactgcttg tagttgtccc
     1381 ggtctttggc tgcatccgtc caaagatagc acatgaaaca agcgaacaat agggagataa
     1441 cagcacaaag gattgagtag aacgaaattc gtttgtccac ataaccgccg tttttcattc
     1501 tgtacccctg ccgttcaaag tccgccaaca cgttttttag gcgattttcg gcactttcaa
     1561 ggcttttccc gtctatttgt acctttcggg ctgttgcgtc ctctatgcgc ttcgtataga
     1621 cttcaacacg ctttagttct tgatacacca gttctaccgc aagctgcggg tttacccttg
     1681 gcgttgtatc ttttcttttc cgggggctgt actgtccctg cttaacgttg gaagctgccg
     1741 cttccgggtg tgagtttgtt tccatgagat atgttcattg agttgcactt cagtttgctt
     1801 tgtgtccgct cgatatgggc gagagtgtag cctttcccta tctcgcttgc cttatactcc
     1861 gtaccgcttc gggctgtgac atagtagccg ttaagtttcc cggtgcttgc cctggcttcc
     1921 cggactttaa aacctctctt accaagttct tccttgaatt tggtaaagtc aaagccctgc
     1981 atcttcttca atacgccgtc catggcttcc ttgatttccg ctttgttgac tttgccaatg
     2041 tcctgcgact gtacaaagtt ccgttccttg gctatggcat tggcggcttc cgttgccttt
     2101 ttccctatcc agttgtcccg gtacagttcc ccggaaaggg aaacccggtt tgccagtatg
     2161 tgcaggtggg cttgctcttt cttgctctcc gtaccgctgt gccggatgat gatgtactgg
     2221 tggttcgcca accccatgcg ctgcatgaag tcgttaccaa gttccgccca gtccgcatcc
     2281 gtaaaggtgg cgctttctac gttcggaaaa tcaatgtgat acggtttcat ttcctgcacc
     2341 atttccgcac cagtacaccc ataaagttca tgccgggcta tctcggtggc tactgcctgc
     2401 ccgtttatct ctttggcgag gtcgtactcc aatgccgcca caccatgtga tatgcttttc
     2461 cctttcccta tcatcgtgag agtatttttt tgagctctgt aattagtgcc cggttctcct
     2521 cgaacacttc ccggtactgg cgaccaccga agtagttgtt cagccgttgg agcgttcctt
     2581 tcaactgggc tatgtcccgg agaagctgcc gttcctcctc ggtgtacctc tcccttgggc
     2641 gccccccaag ggacaaactc cggcagtatt ccgatacgct tagactgcac cgggctgcct
     2701 gctccgcaag tgcgtccttt tcaagttcgg tacaccggaa tgtaatcttt tcgttccgtc
     2761 ttagttccat gccacaaagg taatcttaaa atctttttga gcaaagcgag aaaagcaaga
     2821 attgtccgac aaggacactt cttgctatat atacacatgc cgcatgggaa tacatccacg
     2881 ccaaccgccc agcaaaaagc cccggcgtgt tagaaaatcc cccacagcct aacaaattct
     2941 accccatttc tacccaaggg gattacacgc cgcagaagtc atccgggaac atgtcttcca
     3001 gttcgtccaa atcaatggtt tcttcttcgg acacctccac ccattcaatg ttttctttcc
     3061 ctcttatcgc acatgagtac atctcggcgg cggcaagaga agagaacacc tcgtgcatag
     3121 gctcgccgtt ctctaaccag taaacacaat attcgaccat aacagtttta tcatttatcg
     3181 ttgtaatgcc cctctacctc caagatgtag acctctacca cttcctcgta aatgtcatag
     3241 attatccggt catgggcggt aatgtgtcga gaccatgtaa tatccccacc gccccttaac
     3301 gcttcgggat gcccaagccc agtcttaggg tgctctaaca attctttgta gattttctta
     3361 tacttcttga acaaattggg gtttgatttc ttccatttgg caatcacctt atccaccccg
     3421 tcggaaaccc taattgtgta catcatagac tatcgaaata agcgtcaata tcctcactgc
     3481 ttttgagggt aacacacttt ccggatttga tttcttccct tgccttgtca atccttgctt
     3541 gcagctccgg ggttatcatc aaatcttcac gaccaacttt taccaaagcg taaatctcgt
     3601 ttttcctgcg aattagtacc tgctcgccat tgtcagcttt ggtgaaagac gctgcgaggt
     3661 tgttacggta ttctcttact gataatgctt ccatatctgt ttgcttttaa attcagcaca
     3721 aagatagcta tatttcaata aaatacaaac attttgtaca caaacgtgta cacgccataa
     3781 aaacccgttt ccaatcctac cgcccgttgg ttggttttgc tttgctcttt ttccctatcg
     3841 tttttctttt tccgacagta aatcaaccac ttagctctat aaattcccct tgtctgttat
     3901 aagcatcgtc tgtaatatgc tctatcactt cttcgcaaac gcccataaat aaagggatta
     3961 gaacatgtgt ttccccacac tttgggagtt tagtccccac actttgggag tttaaaagta
     4021 aattagtccc cacactttgg gagttttacc cctctttttt tgttttaatg tggggattgt
     4081 gtatatttgc agcaaatcaa tcgttt
//
