LOCUS       CP103127                4164 bp    DNA     circular BCT 29-AUG-2022
DEFINITION  Bacteroides faecis strain BFG-493 plasmid unnamed2, complete
            sequence.
ACCESSION   CP103127
VERSION     CP103127.1
DBLINK      BioProject: PRJNA646575
            BioSample: SAMN30323396
KEYWORDS    .
SOURCE      Bacteroides faecis
  ORGANISM  Bacteroides faecis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1  (bases 1 to 4164)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4164)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 57x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/22/2022 19:50:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,156
            CDSs (total)                      :: 5,066
            Genes (coding)                    :: 4,614
            CDSs (with protein)               :: 4,614
            Genes (RNA)                       :: 90
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 452
            CDSs (without protein)            :: 452
            Pseudo Genes (ambiguous residues) :: 0 of 452
            Pseudo Genes (frameshifted)       :: 386 of 452
            Pseudo Genes (incomplete)         :: 67 of 452
            Pseudo Genes (internal stop)      :: 25 of 452
            Pseudo Genes (multiple problems)  :: 23 of 452
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4164
                     /organism="Bacteroides faecis"
                     /mol_type="genomic DNA"
                     /strain="BFG-493"
                     /host="Homo sapiens"
                     /db_xref="taxon:674529"
                     /plasmid="unnamed2"
                     /geo_loc_name="USA: Bethesda"
                     /collection_date="2006-09-12"
     gene            join(3414..4164,1..44)
                     /locus_tag="NXY18_25750"
     CDS             join(3414..4164,1..44)
                     /locus_tag="NXY18_25750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="UVQ62251.1"
                     /translation="MIGKGKSISHGVAALEYDLAKEINGQAVATEIARHELYGCTGAEM
                     VQEMKPYHIDFPNVKNNCLRFEVSPSIEESATFTDADWAELGNDFMQRMGLANHQYIII
                     RHSGTESKKEQAHLHILANRVSLSGELYRDNWIGKKATEAANAIAKERNFVQSQDIGKV
                     NKAEIKEAMDGVLKKMQGFDFTKFKEELGKRGFKVREARASTGKLNGYYVTARSGTEYK
                     ASEIGKGYTLAHIERTQSKLKCNSMNISHGNKLTPGSGSFQR"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1..453
                     /locus_tag="NXY18_25755"
     CDS             1..453
                     /locus_tag="NXY18_25755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVQ62252.1"
                     /translation="METNSHPEAAASNVKQGQYSPRKRKDTTPRVNPQLAVELVYQELK
                     RVEVYTKRIEDATARKVQIDGKSLESAENRLKNVLADFERQGYRMKNGGYVDKRISFYS
                     ILCAVISLLFACFMCYLWTDAAKDRDNYKQYYEYYQEQAREQKGNK"
                     /name="hypothetical protein"
     gene            473..703
                     /locus_tag="NXY18_25760"
     CDS             473..703
                     /locus_tag="NXY18_25760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005683050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="charged multivesicular body protein 2b-B"
                     /protein_id="UVQ62253.1"
                     /translation="MGTTEHEEPRFFFILNKGAKSGGEITHAVLNGSIVSKPAGWDAFH
                     GLALAREKLSSEEIQQQMKELGVEMEIVPLI"
                     /name="charged multivesicular body protein 2b-B"
     gene            complement(740..1765)
                     /locus_tag="NXY18_25765"
     CDS             complement(740..1765)
                     /locus_tag="NXY18_25765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008657007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="UVQ62254.1"
                     /translation="MKKKLPITKNKDVVVSWVYTWSKQQDMSIHEQRIVLRILEACQAE
                     LKGVKLKDYAGTKRKFEHGLWDVDAQMHVSDVIFSGRDYNEIIAALDSLAGRFFTYEDD
                     EEWWKCGFISNPKYKKRTGIITFRVSNDLWDVFTKFAKGYREFELNKALALPTGYSLRF
                     YMLMSGQVYPLDISLENLKDRLGIPADKYKDKNGKDRIDHFEERVLKPAKAALDESCPY
                     TFNYVKVRENPNNKRSKVTGFRFYPVYQPQFRDEELEGKELQAKVTARYQIDSHVYEYL
                     RYSCGFTSEEINRNKETFITAQEKITDLIGELALLNGKSREKNNPKGWIINALKGKIKD
                     K"
                     /name="replication initiation protein"
     gene            2179..2446
                     /locus_tag="NXY18_25770"
                     /pseudo=""
     CDS             2179..2446
                     /locus_tag="NXY18_25770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295507.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     gene            2443..2718
                     /locus_tag="NXY18_25775"
     CDS             2443..2718
                     /locus_tag="NXY18_25775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0004519 - endonuclease activity [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YoeB family toxin"
                     /protein_id="UVQ62249.1"
                     /translation="MMYTIRVSDGVDKVIAKWKKSNPNLFKKYKKIYKELLEHPKTGLG
                     HPEALRGGGDITWSRHITAHDRIIYDIYEEVVEVYILEVEGHYNDK"
                     /name="type II toxin-antitoxin system YoeB family toxin"
     gene            2729..2926
                     /locus_tag="NXY18_25780"
     CDS             2729..2926
                     /locus_tag="NXY18_25780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007209655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVQ62250.1"
                     /translation="MVEYCVYWLENGEPMHEVFSSLAAAEMYSCAIRGKENIEWVEVSE
                     EETIDLDELEDMFPDDFCGV"
                     /name="hypothetical protein"
     Typing          3415..4157
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="81.452"
                     /coverage="94.0"
                     /evalue="3e-139"
ORIGIN
        1 atggaaacaa actcacaccc ggaagcggca gcttccaacg ttaagcaggg acagtacagc
       61 ccccggaaaa gaaaagatac aacgccaagg gtaaacccgc agcttgcggt agaactggtg
      121 tatcaagaac taaagcgtgt tgaagtctat acgaagcgca tagaggacgc aacagcccga
      181 aaggtacaaa tagacgggaa aagccttgaa agtgccgaaa atcgcctaaa aaacgtgttg
      241 gcggactttg aacggcaggg gtacagaatg aaaaacggcg gttatgtgga caaacgaatt
      301 tcgttctact caatcctttg tgctgttatc tccctattgt tcgcttgttt catgtgctat
      361 ctttggacgg atgcagccaa agaccgggac aactacaagc agtattatga atactaccaa
      421 gagcaggcaa gggaacaaaa ggggaataaa taaacatcta actttacgaa ttatgggaac
      481 aacggaacac gaagaacccc ggttcttctt catactgaac aagggtgcga agtccggcgg
      541 cgaaatcacc catgccgtcc taaacggtag tatcgtttcg aagccggcag gctgggacgc
      601 ctttcatggg cttgcactgg cgagagagaa actaagcagc gaggaaatac aacagcagat
      661 gaaagaactt ggtgtagaaa tggaaatcgt tcctctgatt tgacaagatt acccggagtg
      721 tttcagccgg gtaatcttgt tacttatcct tgattttccc tttaagggcg tttataatcc
      781 accctttcgg attgttcttt tctcgtgatt ttccgtttag gagagccagt tctccgataa
      841 ggtcggttat cttttcttgt gccgttatga atgtctcttt gttccggttt atctcttccg
      901 atgtgaagcc gcaggaataa cggaggtact cgtacacatg gctgtctatc tgatatcgtg
      961 ctgtaacctt tgcttgcaat tctttccctt ccagttcttc atctctgaac tgtggttgat
     1021 agaccgggta gaacctaaac ccggtcacct tgctacgttt gttgtttggg ttttcacgca
     1081 ctttcacgta gttgaaagtg tatgggcagc tctcatcaag cgcagccttt gctggtttca
     1141 aaactctttc ctcaaaatga tctattctgt cttttccgtt cttgtccttg tatttgtccg
     1201 caggtatgcc aagacggtct ttcaagtttt caagggatat atccaaaggg tacacctgcc
     1261 cactcattaa catgtaaaac ctaagggaat acccagtagg tagcgcaaga gccttgttta
     1321 actcaaattc tctgtacccc ttggcgaact tggtaaacac atcccaaagg tcgttagaca
     1381 cacgaaaggt tataatgcca gtgcgttttt tatattttgg gttagatata aatccgcact
     1441 tccaccattc ctcgtcatct tcgtaagtaa aaaaacgtcc tgccaaagaa tcgagtgcgg
     1501 ctatgatttc attgtaatca cgtccggaaa aaataacgtc agatacatgc atttgtgcat
     1561 caacatccca aagtccatgc tcaaacttgc gtttcgtgcc tgcataatct ttcagtttta
     1621 ctccctttag ttcagcttgg cacgcttcca gtatgcgaag aactattctt tgttcgtgta
     1681 tggacatgtc ttgctgtttt gaccatgtat atacccatga aacaacaaca tctttattct
     1741 tggtaatagg tagtttcttt ttcataaacg attgatttgc tgcaaatata cacaatcccc
     1801 acattaaaac aaaaaaagga ggggtaaaac tcccaaagtg tggggactaa tttactttta
     1861 aactcccaaa gtgtggggac taaactccca aagtgtgggg aaacacatgt tctaatccct
     1921 ttatttatgg gcgtttgcga agaagtgata gagcatatta cagacgatgc ttataacaga
     1981 caaggggaat ttatagagct aagtggttga tttactgtcg gaaaaagaaa aacgataggg
     2041 aaaaagagca aagcaaaacc aaccaacggg cggtaggatt ggaaacgggt ttttatggcg
     2101 tgtacacgtt tgtgtacaaa atgtttgtat tttattgaaa tatagctatc tttgtgctga
     2161 atttaaaagc aaacagatat ggaagcatta tcagtaagag aataccgtaa caacctcgca
     2221 gcgtctttca ccaaagctga caatggcgag caggtactaa ttcgcaggaa aaacgagatt
     2281 tacgcttaac gagatttacg ctttggtaaa agttggtcgt gaagatttga tgataacccc
     2341 ggagctgcaa gcaaggattg acaaggcaag ggaagaaatc aaatccggaa agtgtgttac
     2401 cctcaaaagc agtgaggata ttgacgctta tttcgatagt ctatgatgta cacaattagg
     2461 gtttccgacg gggtggataa ggtgattgcc aaatggaaga aatcaaaccc caatttgttc
     2521 aagaagtata agaaaatcta caaagaattg ttagagcacc ctaagactgg gcttgggcat
     2581 cccgaagcgt taaggggcgg tggggatatt acatggtctc gacacattac cgcccatgac
     2641 cggataatct atgacattta cgaggaagtg gtagaggtct acatcttgga ggtagagggg
     2701 cattacaacg ataaatgata aaactgttat ggtcgaatat tgtgtttact ggttagagaa
     2761 cggcgagcct atgcacgagg tgttctcttc tcttgccgcc gccgagatgt actcatgtgc
     2821 gataagaggg aaagaaaaca ttgaatgggt ggaggtgtcc gaagaagaaa ccattgattt
     2881 ggacgaactg gaagacatgt tcccggatga cttctgcggc gtgtaatccc cttgggtaga
     2941 aatggggtag aatttgttag gctgtggggg attttctaac acgccggggc tttttgctgg
     3001 gcggttggcg tggatgtatt cccatgcggc atgtgtatat atagcaagaa gtgtccttgt
     3061 cggacaattc ttgcttttct cgctttgctc aaaaagattt taagattacc tttgtggcat
     3121 ggaactaaga cggaacgaaa agattacatt ccggtgtacc gaacttgaaa aggacgcact
     3181 tgcggagcag gcagcccggt gcagtctaag cgtatcggaa tactgccgga gtttgtccct
     3241 tgggggcgcc caagggagag gtacaccgag gaggaacggc agcttctccg ggacatagcc
     3301 cagttgaaag gaacgctcca acggctgaac aactacttcg gtggtcgcca gtaccgggaa
     3361 gtgttcgagg agaaccgggc actaattaca gagctcaaaa aaatactctc acgatgatag
     3421 ggaaagggaa aagcatatca catggtgtgg cggcattgga gtacgacctc gccaaagaga
     3481 taaacgggca ggcagtagcc accgagatag cccggcatga actttatggg tgtactggtg
     3541 cggaaatggt gcaggaaatg aaaccgtatc acattgattt tccgaacgta aaaaacaact
     3601 gcctacgttt cgaggtcagc ccctcgatag aggaaagcgc cacctttacg gatgcggact
     3661 gggcggaact tggtaacgac ttcatgcagc gcatggggtt ggcgaaccac cagtacatca
     3721 tcatccggca cagcggtacg gagagcaaga aagagcaagc ccacctgcac atactggcaa
     3781 accgggtttc cctttccggg gaactgtacc gggacaactg gatagggaaa aaggcaacgg
     3841 aagccgccaa tgccatagcc aaggaacgga actttgtaca gtcgcaggac attggcaaag
     3901 tcaacaaagc ggaaatcaag gaagccatgg acggcgtatt gaagaagatg cagggctttg
     3961 actttaccaa attcaaggaa gaacttggta agagaggttt taaagtccgg gaagccaggg
     4021 caagcaccgg gaaacttaac ggctactatg tcacagcccg aagcggtacg gagtataagg
     4081 caagcgagat agggaaaggc tacactctcg cccatatcga gcggacacaa agcaaactga
     4141 agtgcaactc aatgaacata tctc
//
