LOCUS       CP103126                4958 bp    DNA     circular BCT 29-AUG-2022
DEFINITION  Bacteroides faecis strain BFG-493 plasmid unnamed1, complete
            sequence.
ACCESSION   CP103126
VERSION     CP103126.1
DBLINK      BioProject: PRJNA646575
            BioSample: SAMN30323396
KEYWORDS    .
SOURCE      Bacteroides faecis
  ORGANISM  Bacteroides faecis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1  (bases 1 to 4958)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4958)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 57x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/22/2022 19:50:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,156
            CDSs (total)                      :: 5,066
            Genes (coding)                    :: 4,614
            CDSs (with protein)               :: 4,614
            Genes (RNA)                       :: 90
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 452
            CDSs (without protein)            :: 452
            Pseudo Genes (ambiguous residues) :: 0 of 452
            Pseudo Genes (frameshifted)       :: 386 of 452
            Pseudo Genes (incomplete)         :: 67 of 452
            Pseudo Genes (internal stop)      :: 25 of 452
            Pseudo Genes (multiple problems)  :: 23 of 452
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4958
                     /organism="Bacteroides faecis"
                     /mol_type="genomic DNA"
                     /strain="BFG-493"
                     /host="Homo sapiens"
                     /db_xref="taxon:674529"
                     /plasmid="unnamed1"
                     /geo_loc_name="USA: Bethesda"
                     /collection_date="2006-09-12"
     gene            join(4663..4958,1..4)
                     /locus_tag="NXY18_25705"
     CDS             join(4663..4958,1..4)
                     /locus_tag="NXY18_25705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVQ62244.1"
                     /translation="MEVNRTEKITFRCTALEKAALAEQAARCGISTSEYCRTLALGGRP
                     KERYTEEERELFREIARLKGTLQRLNNYFGGRQYREVFEENQALINELKKILSR"
                     /name="hypothetical protein"
     gene            1..795
                     /locus_tag="NXY18_25710"
     CDS             1..795
                     /locus_tag="NXY18_25710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008675765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="UVQ62245.1"
                     /translation="MIAKGKSISHGTAALEYDLAKEINGEAAATEIHRHELFGCTGEEM
                     VQEMKPYFVDFPNVKNNCLRFEVSPSVEESAGMTDADWAKLGNDFMQRMGLMNHQYIIV
                     KHSGTEKNSRQAHLHILANRVSLSGELYKDNWIGKRATEAANSIARERNLVQSKDIGKA
                     NREEIKQAMDGILARMQGFDLAEFSRELEKLGFRVREARASTGKLNGYYVTSRSGTEYK
                     ASEIGKGYTLAHIEKTQKNLKYNSISRNYGNTLKPKDGGLHL"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            752..1201
                     /locus_tag="NXY18_25715"
     CDS             752..1201
                     /locus_tag="NXY18_25715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005783248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVQ62246.1"
                     /translation="METPSNPKTEDYTYKQGQYSPRKRKDTTPKVNPQLAVELVFQELK
                     RVEAYTKRIEDATAKKVEIDRGSLESAENRLKNVLADFERQGNRMKNGSYVDKKVSMYS
                     ILCAFFSLLFACLMCYLWVDAAKDRDNYKRYYEYFQEMDKQKSGE"
                     /name="hypothetical protein"
     gene            complement(1243..1896)
                     /locus_tag="NXY18_25720"
     CDS             complement(1243..1896)
                     /locus_tag="NXY18_25720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008779785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVQ62247.1"
                     /translation="MKKFLLSLATAFSFVLFLGSCTNEEDINNNGYSDKEKAKIETLMN
                     LFDSYGWELDTTISIEQRNKELLEMDYEKTKSFLEYMSNGIEFDNFEPTQQSEDNAPKA
                     LSNTRSTMTFPIYGSHSSAVASSQTTMILSYDGPKPSSVTIQSTSVSSNPATTWTPDEY
                     GSFNFSGNKCDNIKATGMIKYGSIYKHKYEMVGWCSKNSSGIVDDGKITGFHAI"
                     /name="hypothetical protein"
     gene            complement(1965..2756)
                     /locus_tag="NXY18_25725"
     CDS             complement(1965..2756)
                     /locus_tag="NXY18_25725"
                     /inference="COORDINATES: protein motif:HMM:NF013235.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="UVQ62248.1"
                     /translation="MPVSDILKDEQDKHYTIAKAAFRSLSEKHIEYEDDEVWSYTPIIT
                     APEIKKNSGSVKFYVFDNIWRCLLDFTKGFKKYELITAMKFKSAYAMRFYELMSGQTKP
                     LFVLLEGPDGLRERFYLQGKYEKVNDFRRKVIDVAKKELDESSPYSFVAKEEKAGKKII
                     GWTFFPVFYENREDPALQEQARMAKVTARLQLENNVYDYLKFSFDFKSDEINKNKKTLI
                     EGQNRIPDFMGFLGELKKGARLAENPKGYVIGAIKRKLKEI"
                     /name="replication initiation protein"
     gene            complement(2759..2929)
                     /locus_tag="NXY18_25730"
     CDS             complement(2759..2929)
                     /locus_tag="NXY18_25730"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVQ62240.1"
                     /translation="MARTIINNKQVFQSYVLTTAKYDFSPYEKRIMYRLIELAQKEIEG
                     IKLLQQISAEK"
                     /name="hypothetical protein"
     gene            complement(2944..3342)
                     /locus_tag="NXY18_25735"
     CDS             complement(2944..3342)
                     /locus_tag="NXY18_25735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005868776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exo-poly-alpha-D-galacturonosidase"
                     /protein_id="UVQ62241.1"
                     /translation="MKPTTYINWDGLKDIPFFYCDTKEDEENKDFDIYYQGRLVLHDYN
                     HCGHYLYTAAVLFSRIKNKTADWVNLRNLWILRDCVRENYNHGIGVDDIIFGENFDGEN
                     LDTLAPLTKKRFDYLCKRIKELDPYATI"
                     /name="exo-poly-alpha-D-galacturonosidase"
     gene            3767..4000
                     /locus_tag="NXY18_25740"
     CDS             3767..4000
                     /locus_tag="NXY18_25740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005783253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prevent-host-death protein"
                     /protein_id="UVQ62242.1"
                     /translation="MQVIPLSKFRTNQTATLLRAIQGESVFLTSRIGDFKLVPVSVEEK
                     IATRIREGLNEVKRIEAGEQPAKSANAFLDEL"
                     /name="prevent-host-death protein"
     gene            3990..4331
                     /locus_tag="NXY18_25745"
     CDS             3990..4331
                     /locus_tag="NXY18_25745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008142487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="UVQ62243.1"
                     /translation="MSFEVKTTPHFEREAKILAKRYKSFKADMKDFVESLEKNPMQGDE
                     LSPGIRKIRLAIVSKGKGKSGGARVITYTICASESEGRVYLVDVYDKSDFSTVSVSILK
                     KIISEQGIL"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     Typing          2..792
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.076"
                     /coverage="100.0"
                     /evalue="9.15e-172"
ORIGIN
        1 atgatagcaa aaggaaagag catatctcat ggcacggcag cactggagta cgaccttgcc
       61 aaagagataa acggggaggc agcagccacc gagatacacc gccatgagct tttcggctgc
      121 acaggcgaag agatggtgca ggagatgaaa ccttactttg ttgattttcc gaacgtaaag
      181 aataactgcc ttcggtttga ggttagccct tcagtggaag aaagtgcagg catgaccgat
      241 gcggactggg cgaagctcgg caacgacttc atgcagcgca tgggcttgat gaatcaccag
      301 tacatcatcg tgaagcacag cggaacggag aagaacagca gacaagccca cctgcatata
      361 ctggcaaacc gtgtgtcgtt atcgggggaa ctctacaaag acaattggat agggaagaga
      421 gccacagaag ccgccaacag catagccaga gaacggaatt tggtacagtc aaaggacata
      481 ggcaaagcca acagggaaga gataaaacag gctatggacg gtatccttgc aaggatgcag
      541 ggatttgacc ttgccgaatt cagccgtgaa ctcgaaaaac tgggcttcag ggtaagggaa
      601 gcccgtgcga gtaccggcaa acttaacggc tactatgtaa cgagccggag cggaacggaa
      661 tacaaggcaa gcgagatagg gaaaggctat acgcttgccc acatcgaaaa gacacagaaa
      721 aacttaaagt ataactcaat cagcaggaat tatggaaaca ccctcaaacc caaagacgga
      781 ggattacacc tataagcagg gacagtacag cccccgaaag agaaaggaca ccacgcccaa
      841 agtaaatccg caacttgcgg tagagctggt gtttcaagaa ttgaagcgcg tggaagccta
      901 tacaaagcgc atagaggacg caacagccaa gaaggtggaa atagacaggg gaagccttga
      961 aagtgccgaa aatcgcctga aaaacgtatt ggcggacttt gaacggcagg gaaacagaat
     1021 gaaaaatggc agctatgtgg acaagaaagt ttcaatgtac tcaatccttt gtgctttttt
     1081 ctccctattg ttcgcctgtc tgatgtgtta tctgtgggtg gatgcagcca aggacaggga
     1141 caattacaag aggtattatg agtattttca agaaatggat aaacaaaaaa gcggagagta
     1201 gtattctccg cttttttgtt tataatatat tttatcattt ggctatattg catgaaaacc
     1261 agttattttt ccgtcatcaa caatacctga actatttttt gaacaccacc ctaccatttc
     1321 gtatttgtgt ttatagatac tgccatattt aatcattcct gtggctttta tattatcaca
     1381 tttgttccct gaaaagttaa aagaaccgta ttcatcagga gtccaagttg ttgcagggtt
     1441 tgaagatact gatgtacttt gtatcgtcac actggaaggt tttggaccgt cataagataa
     1501 aatcatagtg gtttgcgatg aagcgacagc actactatga ctaccatata tcggaaaggt
     1561 catagtagat cttgtgttgc ttaaggcttt tggtgcattg tcttcacttt gttgagttgg
     1621 ttcaaaatta tcaaactcaa taccattact catgtactcc aagaaacttt tagtcttttc
     1681 gtaatccatt tctaaaagtt ctttgttacg ctgttctata ctaatagtcg tgtcaagttc
     1741 ccaaccataa gaatcgaaca aattcatcaa tgtttcgatt ttagcttttt ctttatcgga
     1801 ataaccgttg ttgtttatgt cctcttcatt ggtacatgac cctaagaata acacaaaaga
     1861 aaaagcagta gctaatgata ataaaaactt tttcatatta gtatacattt aaagtttaga
     1921 tatggcaaat ttaagaaatt atttgttatg ttgtcctctt tctgttagat ttcttttagt
     1981 tttctcttaa tagcgccgat aacatatcct ttggggtttt ctgccagtcg tgcgcctttc
     2041 ttcaattctc ccaagaaccc cataaaatcg ggaatacggt tttgtccctc gataagggtt
     2101 ttcttgtttt tgttgatttc atcagacttg aagtcaaagg agaatttaag gtagtcatat
     2161 acgttgtttt ccagctggag ccgtgctgta actttagcca tgcgcgcttg ttcctgcagc
     2221 gcagggtctt ctctgttttc ataaaataca gggaagaaag tccagccaat aatttttttt
     2281 ccagcttttt cctccttagc tacgaacgaa taaggagaag attcgtcgag ttcttttttg
     2341 gctacatcga taacctttct gcgaaagtcg tttacttttt catactttcc ttgtaaatag
     2401 aatcgttcac gaagcccatc aggtccttct aatagcacaa ataagggctt tgtttgtcca
     2461 gacattagtt catagaaccg catagcataa gcacttttaa atttcatggc ggtaataagt
     2521 tcatacttct taaatccttt ggtaaaatca agcaagcacc tccaaatatt atcgaaaaca
     2581 tagaacttta cagagccact attcttcttt atttcaggtg cagttatgat aggagtgtat
     2641 gaccatactt catcatcttc gtactctata tgcttttcag ataggcttct gaatgcagct
     2701 ttggcaatag tgtagtgctt gtcttgttcg tctttcagta tgtccgatac aggcatggtt
     2761 atttctctgc cgaaatttgt tggagcaatt ttatcccttc aatttctttt tgagcaagtt
     2821 caattagtct atacattatg cgcttttcat atggcgaaaa atcatattta gcagtagtta
     2881 gaacataaga ttgaaagact tgcttattgt ttattatagt tcttgccata gatgctgcct
     2941 tttttagatt gttgcatatg ggtcaagttc cttaatccgc ttacacaaat aatcaaatcg
     3001 tttctttgta agtggtgcga gtgtatcgag gttctcgcca tcaaaatttt ctccaaagat
     3061 aatgtcgtcc acccctatgc cgtgattgta gttctcacgc acacaatcac gcagaatcca
     3121 aaggtttcgc aggttcaccc agtctgccgt tttgttcttg attctgctga acagcacagc
     3181 agctgtgtag aggtagtgcc cgcaatggtt gtagtcatgc agcaccagcc tcccttgata
     3241 gtatatatcg aagtctttgt tttcttcatc ttcctttgta tcgcagtaga agaacggaat
     3301 atctttcaaa ccgtcccaat taatgtaagt agttggtttc ataagtgctg atttaaaagt
     3361 ttaaggcaaa ggtaattatt aaaaacgact aatacaatag atagacgtat aaagtatcaa
     3421 aaatgtcgtt tttacccctt caaaaaagta tcaaaaatgt cgtattaaag tatcaaaaat
     3481 gtcgtactta gagggtgttt ttctcgcata atgcgcgcgc gcgaggatag gacatagata
     3541 gtcgatgtta agatagaaac aagctcataa ggttgagatt gcttcccaac tttcggaaaa
     3601 aacggacgaa aaacaatagg gaaaacaaag acaaagcccc ccttcgtaaa aggggggggg
     3661 ggggggggta ttgaagcttt ttcctgcgtg ttaaagtata ttaatttggt tgcaatatcg
     3721 gtaacaatgg ttacatttgt atcacaatca aaaaagttta agatatatgc aagtaattcc
     3781 attgagcaaa tttcggacga atcagacagc gacccttctt cgtgctattc agggagaatc
     3841 cgtctttctg acttcacgta tcggtgattt taaactggtg ccagtgtccg tagaagaaaa
     3901 aatagccact cgaataagag agggcttgaa tgaagtgaaa cgaatcgaag ctggtgaaca
     3961 gccagccaag agcgcaaacg catttcttga tgagctttga agtaaagacc accccacatt
     4021 ttgagaggga agcgaaaatc cttgcaaaaa ggtataagtc ttttaaagct gacatgaagg
     4081 attttgtcga gtcattggaa aagaacccca tgcaggggga tgaactgagc cctggtatcc
     4141 gtaaaataag acttgccatt gtttctaagg ggaagggtaa gtctggggga gcacgtgtta
     4201 tcacatacac gatttgtgca tcggagagtg aaggtcgtgt ttatcttgtg gatgtctatg
     4261 ataagtcaga cttctctacc gtaagtgtat ctattcttaa aaaaatcata tctgaacagg
     4321 gtatcctttg accagtcagc gttagtgaag cgaacagtgt tttttctctt ttcagtctgc
     4381 aaaggtaact ccacactccg aagccgtcaa ggacttcgca agttcggatc tgaaaaaatc
     4441 ctgaacagct tcgctgtgcg gttttttccg ctcgaaccct tgaccgctct ccgtgttccg
     4501 ttgtgggaat ggcaggaaaa aagaaaaaat gtgtggctat gcagtgtgtt agtgctgtgt
     4561 gtattcccat gcggcatgtg tatatatagc aagaagtgtc cttgtcggac attcttgcct
     4621 ttctcgcttt gctcaaaagg attttaagat tacctttgcg acatggaagt aaatcgaacg
     4681 gagaagataa cattccgctg cacggcactt gaaaaggcgg cacttgcgga acaggcagcc
     4741 cgatgcggta tcagcacatc ggaatactgc cgtacgctcg cactgggcgg acgacccaaa
     4801 gagaggtaca cggaagaaga aagggaactg tttcgggaga tagcccgact gaaagggaca
     4861 ctccagcgtc tgaacaacta cttcggtggg cgccagtaca gggaagtgtt cgaggagaac
     4921 caggcactaa tcaatgaact taaaaagata ctttcacg
//
