LOCUS       CP103115                4141 bp    DNA     circular BCT 29-AUG-2022
DEFINITION  Bacteroides ovatus strain BFG-177 plasmid unnamed1, complete
            sequence.
ACCESSION   CP103115
VERSION     CP103115.1
DBLINK      BioProject: PRJNA646575
            BioSample: SAMN30323210
KEYWORDS    .
SOURCE      Bacteroides ovatus
  ORGANISM  Bacteroides ovatus
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1  (bases 1 to 4141)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4141)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 277x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/22/2022 20:44:30
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,610
            CDSs (total)                      :: 5,516
            Genes (coding)                    :: 4,069
            CDSs (with protein)               :: 4,069
            Genes (RNA)                       :: 94
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 1,447
            CDSs (without protein)            :: 1,447
            Pseudo Genes (ambiguous residues) :: 0 of 1,447
            Pseudo Genes (frameshifted)       :: 1,346 of 1,447
            Pseudo Genes (incomplete)         :: 49 of 1,447
            Pseudo Genes (internal stop)      :: 121 of 1,447
            Pseudo Genes (multiple problems)  :: 67 of 1,447
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..4141
                     /organism="Bacteroides ovatus"
                     /mol_type="genomic DNA"
                     /strain="BFG-177"
                     /host="Homo sapiens"
                     /db_xref="taxon:28116"
                     /plasmid="unnamed1"
                     /geo_loc_name="USA: Bethesda"
                     /collection_date="1985-10-18"
     gene            1..795
                     /locus_tag="NXW64_27970"
     CDS             1..795
                     /locus_tag="NXW64_27970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="UVO71721.1"
                     /translation="MIGKGKSISHGVAALEYDLAKEINGQAVATEIARHELYGCTGAEM
                     VQEMKPYHIDFPNVKNNCLRFEVSPSIEESATFTDADWAELGNDFMQRMGLANHQYIII
                     RHSGTESKKEQAHLHILANRVSLSGELYRDNWIGKKATEAANAIAKERNFVQSQDIGKV
                     NKAEIKEAMDGVLKKMQGFDFTKFKEELGKRGFKVREAGASTGKLNGYYVTARSGTEYK
                     ASEIGKGYTLAHIERTQSKLKCNSMNISHGNKLTPGSGSFQR"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            752..1204
                     /locus_tag="NXW64_27975"
     CDS             752..1204
                     /locus_tag="NXW64_27975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVO71722.1"
                     /translation="METNSHPEAAASNVKQGQYSPRKRKDTTPRVNPQLAVELVYQELK
                     RVEVYTKRIEDATARKVQIDGKSLESAENRLKNVLADFERQGYRMKNGGYVDKRISFYS
                     ILCAVISLLFACFMCYLWTDAAKDRDNYKQYYEYYQEQAREQKGNK"
                     /name="hypothetical protein"
     gene            1224..1454
                     /locus_tag="NXW64_27980"
     CDS             1224..1454
                     /locus_tag="NXW64_27980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005683050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="charged multivesicular body protein 2b-B"
                     /protein_id="UVO71723.1"
                     /translation="MGTTEHEEPRFFFILNKGAKSGGEITHAVLNGSIVSKPAGWDAFH
                     GLALAREKLSSEEIQQQMKELGVEMEIVPLI"
                     /name="charged multivesicular body protein 2b-B"
     gene            complement(1491..2516)
                     /locus_tag="NXW64_27985"
     CDS             complement(1491..2516)
                     /locus_tag="NXW64_27985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008657007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="UVO71724.1"
                     /translation="MKKKLPITKNKDVVVSWVYTWSKQQDMSIHEQRIVLRILEACQAE
                     LKGVKLKDYAGTKRKFEHGLWDVDAQMHVSDVIFSGRDYNEIIAALDSLAGRFFTYEDD
                     EEWWKCGFISNPKYKKRTGIITFRVSNDLWDVFTKFAKGYREFELNKALALPTGYSLRF
                     YMLMSGQVYPLDISLENLKDRLGIPADKYKDKNGKDRIDHFEERVLKPAKAALDESCPY
                     TFNYVKVRENPNNKRSKVTGFRFYPVYQPQFRDEELEGKELQAKVTARYQIDSHVYEYL
                     RYSCGFTSEEINRNKETFITAQEKITDLIGELALLNGKSREKNNPKGWIINALKGKIKD
                     K"
                     /name="replication initiation protein"
     gene            2922..3173
                     /locus_tag="NXW64_27990"
     CDS             2922..3173
                     /locus_tag="NXW64_27990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVO71718.1"
                     /translation="MEALSVREYRNNLAASFTKADNGEQVLIRRKNEIYALVKVGREDL
                     MITPELQARIDKAREEIKSGKCVTLKSSEDIDAYFDSL"
                     /name="hypothetical protein"
     gene            3170..3445
                     /locus_tag="NXW64_27995"
     CDS             3170..3445
                     /locus_tag="NXW64_27995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0004519 - endonuclease activity [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YoeB family toxin"
                     /protein_id="UVO71719.1"
                     /translation="MMYTIRVSDGVDKVIAKWKKSNPNLFKKYKKIYKELLEHPKTGLG
                     HPEALRGGGDITWSRHITAHDRIIYDIYEEVVEVYILEVEGHYNDK"
                     /name="type II toxin-antitoxin system YoeB family toxin"
     gene            3456..3653
                     /locus_tag="NXW64_28000"
     CDS             3456..3653
                     /locus_tag="NXW64_28000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007209655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVO71720.1"
                     /translation="MVEYCVYWLENGEPMHEVFSSLAAAEMYSCAIRGKENIEWVEVSE
                     EETIDLDELEDMFPDDFCGV"
                     /name="hypothetical protein"
ORIGIN
        1 atgataggga aagggaaaag catatcacat ggtgtggcgg cattggagta cgacctcgcc
       61 aaagagataa acgggcaggc agtagccacc gagatagccc ggcatgaact ttatgggtgt
      121 actggtgcgg aaatggtgca ggaaatgaaa ccgtatcaca ttgattttcc gaacgtaaaa
      181 aacaactgcc tacgtttcga ggtcagcccc tcgatagagg aaagcgccac ctttacggat
      241 gcggactggg cggaacttgg taacgacttc atgcagcgca tggggttggc gaaccaccag
      301 tacatcatca tccggcacag cggtacggag agcaagaaag agcaagccca cctgcacata
      361 ctggcaaacc gggtttccct ttccggggaa ctgtaccggg acaactggat agggaaaaag
      421 gcaacggaag ccgccaatgc catagccaag gaacggaact ttgtacagtc gcaggacatt
      481 ggcaaagtca acaaagcgga aatcaaggaa gccatggacg gcgtattgaa gaagatgcag
      541 ggctttgact ttaccaaatt caaggaagaa cttggtaaga gaggttttaa agtccgggaa
      601 gccggggcaa gcaccgggaa acttaacggc tactatgtca cagcccgaag cggtacggag
      661 tataaggcaa gcgagatagg gaaaggctac actctcgccc atatcgagcg gacacaaagc
      721 aaactgaagt gcaactcaat gaacatatct catggaaaca aactcacacc cggaagcggc
      781 agcttccaac gttaagcagg gacagtacag cccccggaaa agaaaagata caacgccaag
      841 ggtaaacccg cagcttgcgg tagaactggt gtatcaagaa ctaaagcgtg ttgaagtcta
      901 tacgaagcgc atagaggacg caacagcccg aaaggtacaa atagacggga aaagccttga
      961 aagtgccgaa aatcgcctaa aaaacgtgtt ggcggacttt gaacggcagg ggtacagaat
     1021 gaaaaacggc ggttatgtgg acaaacgaat ttcgttctac tcaatccttt gtgctgttat
     1081 ctccctattg ttcgcttgtt tcatgtgcta tctttggacg gatgcagcca aagaccggga
     1141 caactacaag cagtattatg aatactacca agagcaggca agggaacaaa aggggaataa
     1201 ataaacatct aactttacga attatgggaa caacggaaca cgaagaaccc cggttcttct
     1261 tcatactgaa caagggtgcg aagtccggcg gcgaaatcac ccatgccgtc ctaaacggta
     1321 gtatcgtttc gaagccggca ggctgggatg cctttcatgg gcttgcactg gcgagagaga
     1381 aactaagcag cgaggaaata caacagcaga tgaaagaact tggtgtagaa atggaaatcg
     1441 ttcctctgat ttgacaagat tacccggagt gtttcagccg ggtaatcttg ttacttatcc
     1501 ttgattttcc ctttaagggc gtttataatc caccctttcg gattgttctt ttctcgtgat
     1561 tttccgttta ggagagccag ttctccgata aggtcggtta tcttttcttg tgccgttatg
     1621 aatgtctctt tgttccggtt tatctcttcc gatgtgaagc cgcaggaata acggaggtac
     1681 tcgtacacat ggctgtctat ctgatatcgt gctgtaacct ttgcttgcaa ttctttccct
     1741 tccagttctt catctctgaa ctgtggttga tagaccgggt agaacctaaa cccggtcacc
     1801 ttgctacgtt tgttgtttgg gttttcacgc actttcacgt agttgaaagt gtatgggcag
     1861 ctctcatcaa gcgcagcctt tgctggtttc aaaactcttt cctcaaaatg atctattctg
     1921 tcttttccgt tcttgtcctt gtatttgtcc gcaggtatgc caagacggtc tttcaagttt
     1981 tcaagggata tatccaaagg gtacacctgc ccactcatta acatgtaaaa cctaagggaa
     2041 tacccagtag gtagcgcaag agccttgttt aactcaaatt ctctgtaccc cttggcgaac
     2101 ttggtaaaca catcccaaag gtcgttagac acacgaaagg ttataatgcc agtgcgtttt
     2161 ttatattttg ggttagatat aaatccgcac ttccaccatt cctcgtcatc ttcgtaagta
     2221 aaaaaacgtc ctgccaaaga atcgagtgcg gctatgattt cattgtaatc acgtccggaa
     2281 aaaataacgt cagatacatg catttgtgca tcaacatccc aaagtccatg ctcaaacttg
     2341 cgtttcgtgc ctgcataatc tttcagtttt actcccttta gttcagcttg gcacgcttcc
     2401 agtatgcgaa gaactattct ttgttcgtgt atggacatgt cttgctgttt tgaccatgta
     2461 tatacccatg aaacaacaac atctttattc ttggtaatag gtagtttctt tttcataaac
     2521 gattgatttg ctgcaaatat acacaatccc cacattaaaa caaaaaaaga ggggtaaaac
     2581 tcccaaagtg tggggactaa tttactttta aactcccaaa gtgtggggac taaactccca
     2641 aagtgtgggg aaacacatgt tctaatccct ttatttatgg gcgtttgcga agaagtgata
     2701 gagcatatta cagacgatgc ttataacagg aatttataga gctaagtggt tgatttactg
     2761 tcggaaaaag aaaaacgata gggaaaaaga gcaaagcaaa accaaccaac gggcggtagg
     2821 attggaaacg ggtttttatg gcgtgtacac gtttgtgtac aaaatgtttg tattttattg
     2881 aaatatagct atctttgtgc tgaatttaaa agcaaacaga tatggaagca ttatcagtaa
     2941 gagaataccg taacaacctc gcagcgtctt tcaccaaagc tgacaatggc gagcaggtac
     3001 taattcgcag gaaaaacgag atttacgctt tggtaaaagt tggtcgtgaa gatttgatga
     3061 taaccccgga gctgcaagca aggattgaca aggcaaggga agaaatcaaa tccggaaagt
     3121 gtgttaccct caaaagcagt gaggatattg acgcttattt cgatagtcta tgatgtacac
     3181 aattagggtt tccgacgggg tggataaggt gattgccaaa tggaagaaat caaaccccaa
     3241 tttgttcaag aagtataaga aaatctacaa agaattgtta gagcacccta agactgggct
     3301 tgggcatccc gaagcgttaa ggggcggtgg ggatattaca tggtctcgac acattaccgc
     3361 ccatgaccgg ataatctatg acatttacga ggaagtggta gaggtctaca tcttggaggt
     3421 agaggggcat tacaacgata aatgataaaa ctgttatggt cgaatattgt gtttactggt
     3481 tagagaacgg cgagcctatg cacgaggtgt tctcttctct tgccgccgcc gagatgtact
     3541 catgtgcgat aagagggaaa gaaaacattg aatgggtgga ggtgtccgaa gaagaaacca
     3601 ttgatttgga cgaactggaa gacatgttcc cggatgactt ctgcggcgtg taatcccctt
     3661 gggtagaaat ggggtagaat ttgttaggct gtgggggatt ttctaacacg ccggggcttt
     3721 ttgctgggcg gttggcgtgg atgtattccc atgcggcatg tgtatatata gcaagaagtg
     3781 tccttgtcgg acaattcttg cttttctcgc tttgctcaaa aagattttaa gattaccttt
     3841 gtggcatgga actaagacgg aacgaaaaga ttacattccg gtgtaccgaa cttgaaaagg
     3901 acgcacttgc ggagcaggca gcccggtgca gtctaagcgt atcggaatac tgccggagtt
     3961 tgtcccttgg ggggcgccca agggagaggt acaccgagga ggaacggcag cttctccggg
     4021 acatagccca gttgaaagga acgctccaac ggctgaacaa ctacttcggt ggtcgccagt
     4081 accgggaagt gttcgaggag aaccgggcac taattacaga gctcaaaaaa atactctcac
     4141 g
//
