LOCUS       CP103107                2729 bp    DNA     circular BCT 29-AUG-2022
DEFINITION  Bacteroides thetaiotaomicron strain BFG-446 plasmid unnamed3,
            complete sequence.
ACCESSION   CP103107
VERSION     CP103107.1
DBLINK      BioProject: PRJNA646575
            BioSample: SAMN30323354
KEYWORDS    .
SOURCE      Bacteroides thetaiotaomicron
  ORGANISM  Bacteroides thetaiotaomicron
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1  (bases 1 to 2729)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2729)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 53x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/22/2022 19:44:52
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,322
            CDSs (total)                      :: 5,225
            Genes (coding)                    :: 4,535
            CDSs (with protein)               :: 4,535
            Genes (RNA)                       :: 97
            rRNAs                             :: 4, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 80
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 690
            CDSs (without protein)            :: 690
            Pseudo Genes (ambiguous residues) :: 0 of 690
            Pseudo Genes (frameshifted)       :: 632 of 690
            Pseudo Genes (incomplete)         :: 68 of 690
            Pseudo Genes (internal stop)      :: 20 of 690
            Pseudo Genes (multiple problems)  :: 25 of 690
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2729
                     /organism="Bacteroides thetaiotaomicron"
                     /mol_type="genomic DNA"
                     /strain="BFG-446"
                     /host="Homo sapiens"
                     /db_xref="taxon:818"
                     /plasmid="unnamed3"
                     /geo_loc_name="USA: Bethesda"
                     /collection_date="2001-01-09"
     gene            1..1104
                     /locus_tag="NXW43_26605"
     CDS             1..1104
                     /locus_tag="NXW43_26605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="UVO76269.1"
                     /translation="MGATSIHVQAVKPGSEIHNFREKELDYVRPELSHLNESWVGDSIS
                     HRLESAKQRYFDTVGQKMQTKAAPIREGVIVIKQETTMQELQQFAAVCKERFGIEAFQI
                     HIHKDEGYMNAKQWTPNLHAHVVFDWTQPNGKSVRLSRDDMAELQTIASEALGMERGVS
                     SDRKHLSAMQYKTECAKEQLQELSNDISSALDKHKDVQNQLLQLQKELRSIETKKNVQK
                     LISKASEKFYGLIGKTVNDREKDALKAKIKALEGENEQLSDRLGKAILEKERNGTKVFK
                     AENDKEYYRQQMDNARTTSNRLRTENQELKTETKELKKELGKMKDLFNSEQLEALRHHF
                     PNISKAMEEGKDLLKQITRSRGFGMGM"
                     /name="mobilization protein"
     gene            1576..2112
                     /locus_tag="NXW43_26610"
     CDS             1576..2112
                     /locus_tag="NXW43_26610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008670455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RepA protein"
                     /protein_id="UVO76268.1"
                     /translation="MENKKVLKLTDFQKNEENPFMKQAIEGIENHVVKKYKSSTGSDKK
                     AVVAVADTDTGEVFKTSFIRQIFNLSQSAIRVFGYILTCMKPKNDMIIFDRRKCLEYTQ
                     YKSDKAIYKGLAELVQSEIIARGPNEYNWFINPLIVFNGDRVSFTKTYVRKKTLAAQKK
                     EEAEKRQLSLGFDEL"
                     /name="RepA protein"
     Typing          2..1101
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.913"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgggagcaa caagtattca tgtacaagca gtgaagccgg ggagcgagat tcacaacttt
       61 agggaaaaag agttggacta tgttcgtccg gaacttagtc atttgaatga aagctgggtt
      121 ggagatagca tctcccatcg gctggagagt gcgaaacaga gatatttcga tacggttggg
      181 cagaagatgc agactaaagc agcacccata cgggaggggg taatagtaat caagcaagaa
      241 accaccatgc aggaactcca gcaattcgct gcggtctgca aggaacgttt cggtattgaa
      301 gcgtttcaaa tccatataca caaggacgaa ggatacatga acgcaaagca atggacacct
      361 aaccttcacg cccatgtagt tttcgattgg acgcagccga acgggaagag tgtgcgttta
      421 tcgcgtgatg acatggcaga actccaaacc atagcatctg aagcactggg catggaacgt
      481 ggtgtttctt ctgatcgcaa acacttatcg gctatgcagt acaagaccga atgtgcgaaa
      541 gaacagcttc aggaactatc caacgatata tccagtgcgt tagacaagca caaggacgtg
      601 caaaaccagc ttcttcagct tcagaaagaa ctacgttcca ttgaaacaaa gaaaaacgtc
      661 caaaaactca tttctaaggc ttcagagaag ttttacggct tgatagggaa aacggttaac
      721 gatagggaaa aagatgcctt aaaagccaaa ataaaggctt tagaggggga aaatgaacag
      781 ctatccgata gactgggaaa ggctatactt gaaaaagagc gaaacggcac aaaggtattc
      841 aaagccgaga acgacaagga gtattataga cagcaaatgg acaatgcaag gacaaccagt
      901 aaccgactaa gaacggagaa ccaagaacta aagaccgaaa ccaaggaatt gaaaaaagaa
      961 cttggtaaga tgaaagactt gttcaattcc gaacaactgg aggctttaag gcatcatttc
     1021 ccaaacatat caaaagctat ggaagagggg aaagacctac tcaagcaaat caccagaagc
     1081 agaggtttcg gcatgggtat gtaacccccc ccgcccccaa agggggagcg accaaacggc
     1141 agcttcactc aatggagtgt tacgccgttc gggttcggaa gaaattttgc agggttcgaa
     1201 aaacggttgt gtgcttattt gaaaaaaagt ttatggtgtg ggcgctcgtc gggacgggtg
     1261 gtcccgcccc ttgccgctgg gcgctccccg accgatgatt ttttaagtag ttgattatat
     1321 gccgttttta gggtataata agaacttaag aaatagaata agttaagtag ttgatactca
     1381 atatagggta ttttccatat tggaaaatct gattttccat attagaaagt cgctctttcc
     1441 tattagatgt taaaaaggaa aatatatttt gcttttttat tgtattaatg gaaatttaaa
     1501 tattcctttg tggaaaatca aattatactt tttcaccgat atatagaaag tcaaatttgc
     1561 ctaaatagaa tgtttatgga aaataagaaa gtactcaaat taaccgattt tcaaaaaaac
     1621 gaagaaaacc cctttatgaa acaagcaatt gaagggattg aaaatcacgt tgttaagaaa
     1681 tacaaaagta gtacgggaag tgataaaaaa gctgtagttg ctgttgctga tacagataca
     1741 ggagaagtat tcaaaacctc gtttatccga caaattttca atctatcaca atcagctatt
     1801 cgggttttcg ggtatattct aacttgcatg aagcctaaga atgatatgat aattttcgat
     1861 aggcgaaaat gcttagaata cacccaatac aaatcagaca aagccatata caaaggattg
     1921 gcagagctcg tacaaagtga aatcatagca agaggtccaa acgaatataa ttggttcatt
     1981 aatccgttga ttgtctttaa tggggatagg gtttcattta caaaaacata cgttcggaaa
     2041 aagactttag ctgcccaaaa gaaagaagaa gcagagaaac gacagttatc acttggtttt
     2101 gatgaactgt aacactccat tgagtgaagc tgccgtttgg tcgctccccc tttggggggc
     2161 gggggggata gataaagttc ctctatgtaa agttataatg ggggatgaaa ggcaaggttc
     2221 gctaacctta ccccgattgt ttatgcttcc cagcattcaa tctatccccg tttatgggtt
     2281 tctctttcac cctacaaaga taacctcatg ggggaaaaat gtccaagaat atggggtaaa
     2341 aactatcaag tcggtagaaa ataagtatct ttgaagtaca tttttagtag aggtactggt
     2401 atgcctagac gaagcagata ggcaaaaata aagccgctgg ggatgtcgga tgtccgtcaa
     2461 ttaactccag cggcttgtat tttggtaact ctcccgtatc ggtcagctac cgtttggtca
     2521 gcaacaaagg tagtacttta ttgtcgcaaa tccaaatgtt ttccccttta tttgtgcatt
     2581 tacaaaacat tcactaactt cgcacctatg cagtatggtg atagcacact agcaccctaa
     2641 agggtacgtg tgtaagggga caagccccct taaccccctg tcagccggct gtcaccggct
     2701 gttatcgatt gtcacaaaaa tgttaactt
//
