LOCUS       CP103103                5622 bp    DNA     circular BCT 29-AUG-2022
DEFINITION  Bacteroides cellulosilyticus strain BFG-371 plasmid unnamed1,
            complete sequence.
ACCESSION   CP103103
VERSION     CP103103.1
DBLINK      BioProject: PRJNA646575
            BioSample: SAMN30323308
KEYWORDS    .
SOURCE      Bacteroides cellulosilyticus
  ORGANISM  Bacteroides cellulosilyticus
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1  (bases 1 to 5622)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5622)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 83x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/22/2022 20:17:22
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.2
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,688
            CDSs (total)                      :: 5,609
            Genes (coding)                    :: 5,254
            CDSs (with protein)               :: 5,254
            Genes (RNA)                       :: 79
            rRNAs                             :: 4, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 355
            CDSs (without protein)            :: 355
            Pseudo Genes (ambiguous residues) :: 0 of 355
            Pseudo Genes (frameshifted)       :: 313 of 355
            Pseudo Genes (incomplete)         :: 52 of 355
            Pseudo Genes (internal stop)      :: 21 of 355
            Pseudo Genes (multiple problems)  :: 28 of 355
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..5622
                     /organism="Bacteroides cellulosilyticus"
                     /mol_type="genomic DNA"
                     /strain="BFG-371"
                     /host="Homo sapiens"
                     /db_xref="taxon:246787"
                     /plasmid="unnamed1"
                     /geo_loc_name="USA: Bethesda"
     gene            629..1219
                     /locus_tag="NXW88_28405"
     CDS             629..1219
                     /locus_tag="NXW88_28405"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="UVP53904.1"
                     /translation="MKAYMDAHVCSNVYTVQGGKAHSHYCHRAFCPICQRIQTAQNVKK
                     FLPVMKYLASEGREFYFVTLTLQNCVTDDARVLRDFMRRCNRMWADGIRTKHKFRSLGI
                     SGVIKKECTYHVVKKDLFSFHYHFHIIVDSLEAAKYVVAQWKKLHGSTVADARFQKYKK
                     IEDFENAAIEVFKYASKASVSKSKGRDGKKRFR"
                     /name="protein rep"
     gene            1231..1530
                     /locus_tag="NXW88_28410"
     CDS             1231..1530
                     /locus_tag="NXW88_28410"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVP53905.1"
                     /translation="MDMIYTAMHGMQRMSSFGQFRTMIGDEALNDFRDEDLVLNIEGLN
                     VEDGCYTWYMSVKDKVADWYNMETGEALCCYKVTRKDELLQDIYLDEDIFPNSG"
                     /name="hypothetical protein"
     gene            complement(1534..1995)
                     /locus_tag="NXW88_28415"
     CDS             complement(1534..1995)
                     /locus_tag="NXW88_28415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005812785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVP53907.1"
                     /translation="MNRIIHISLLISTVSLFLISNTGCVEKQGYYNHGEESIISLICDI
                     TWAGKKTTDENGSVWQGTYKFNKNGTYTRTNIEIDKQGNKKEANIYGQWSFGDPSFSTI
                     YFGGEHYWDIDELTKNKFSFYDRSGKFGDPFMNREYIELTPYQENNTTN"
                     /name="hypothetical protein"
     gene            2087..2857
                     /locus_tag="NXW88_28420"
     CDS             2087..2857
                     /locus_tag="NXW88_28420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016274503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVP53906.1"
                     /translation="MKKVMFMFISLLTVLGVCSCNDNEVIEPVVSDSVSDMEVLSRFVD
                     VNEITNEYYFNENKKTRALSYVTGSDWQDLEKVSPLSIEKYKNNLQVLNAQVASAISNP
                     NTAYVVFSVNGKTLVKKVKEDANFDFSVFRDVVTETRAVLPSLSINGGSQSTTGVFYDS
                     SRTLKMQVDLNASIQNNYYFFEVLNPNAKPSPDDNITTPESVAFSGTGPLWSNTFTWTS
                     YWDANVPGQGFKWEFKGKGTTPSFGFIANCTFSR"
                     /name="hypothetical protein"
     gene            complement(2997..4208)
                     /locus_tag="NXW88_28425"
     CDS             complement(2997..4208)
                     /locus_tag="NXW88_28425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013622866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="UVP53901.1"
                     /translation="MAKTCIRVEACNIGSSERHNLRSKELDYIRPELTHRNEQWVECSI
                     AEVHRDITEKYKEATGQGLQKKATPIREGVIVISEETTIQQLQDLAEKLEERFGVHAFQ
                     IYTHKDEGANVWDGKEEAWKPNYHAHMIFDWTDGHTGKTVKLNRHDMAEMQTITAECLN
                     MERGVSSDKKHLSAMQYKNKMETEKAEQLQKDIEQLNRAYTAGTEKITTVQKELSTAQK
                     ELNSMKTDIHINEAKEAAAKAGKTVFNAVTSVFNVGEVKRQAKEIETLKKENYNLSFKN
                     QNLEGQLRTNNIEMRRVQETTDRQIKAEASKLKPITNLFPEMENAQENIEELQTMGIQN
                     KDIRQLLIGKEIYYTGNLYDKDKRKSYQVKNVKIDISKSQNGITTIWLNNIHFKNFLKE
                     LHPL"
                     /name="hypothetical protein"
     gene            4614..4862
                     /locus_tag="NXW88_28430"
     CDS             4614..4862
                     /locus_tag="NXW88_28430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008771457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="UVP53902.1"
                     /translation="MVTNIIQIGNSKGIILPSEVLKQLRLSLKSAVSISLDGNNIVIKA
                     QPRQGWAEAAKRAHENGDDELLIPDVFEDEKFEDWTW"
                     /name="AbrB/MazE/SpoVT family DNA-binding domain-containing
                     protein"
     gene            4856..5176
                     /locus_tag="NXW88_28435"
     CDS             4856..5176
                     /locus_tag="NXW88_28435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005799262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="UVP53908.1"
                     /translation="MVEQYEVYWVELDPTRGGEMAKTRPCVVVTPSDLNMYLTTVVIVP
                     ITSTIRNYPYRVLCSVAGREGEIATDQIRTVDKSRLKRKIGDLNFSEIKRLREVFQQMF
                     CE"
                     /name="type II toxin-antitoxin system PemK/MazF family
                     toxin"
     gene            5213..5611
                     /locus_tag="NXW88_28440"
     CDS             5213..5611
                     /locus_tag="NXW88_28440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005799260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exo-poly-alpha-D-galacturonosidase"
                     /protein_id="UVP53903.1"
                     /translation="MKPTDYIEWDNLKDIPFFLCQVVEDREKQDLDIYYLGKRVLHDYD
                     HVGHYLRTAVILFRRVKSRTADWVNLRNLWTLRNCVRENYNHGIGMNDLIFGENFDGDN
                     LDTLTPLTKKRFDFLCKRIKELDPYATI"
                     /name="exo-poly-alpha-D-galacturonosidase"
     Typing          484..1530
                     /name="rep_cluster_870"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.714"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          complement(3010..4208)
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gtgaaggcag ggtttgtctt tgtgtgctcc ccctttgggg gacgggaggg ggataagaaa
       61 aaaataccac cggagatgtc ggatatccgt caattcactc cggtgttttt tttgcaactc
      121 tcccgtatcg ctcggcaagg gttgtctttg tgtacggcaa agatagtttt ttttccggaa
      181 gtatctttgt ctgttgtgga tttagtagtg tattggtgtc agaattgcgc agccggggga
      241 atgggggcga gcccccatac tagataaact agaaagtttc gtggtaaatg ctttttgact
      301 tgttatatgt aggttttttg aatgatgttt ggcggtttgg aatgaattac ctacttttgg
      361 gctgagaaaa aacgaaagcc cgaaggcagt aaccaacggg ctttgtattt taagaattag
      421 caatcgtttg tgttcgttct tggcggggcg gataccaaac gaaagccaca tcaaaatttc
      481 atatgtgcaa agatagaaca aatataacca actgcaaaga aagtccgtta aaaaacggtt
      541 ctgatagtct taaaaaaagg ctaaagtaaa aatcatatcc cataatttta ctcgaaaact
      601 ttcggaaaag aatccggata gtaagctgat gaaagcatat atggatgccc atgtgtgttc
      661 aaatgtttat actgtgcagg gaggtaaggc gcattcccat tattgtcatc gggctttttg
      721 tcctatttgt cagcgtattc aaacggcaca aaatgtaaag aagttccttc cggttatgaa
      781 gtatttggct tcggaaggca gagagtttta ttttgtgacg cttaccttgc aaaattgtgt
      841 aaccgatgat gcaagggtat tgcgagattt catgcgtaga tgtaaccgga tgtgggctga
      901 tggtataagg acgaaacaca agtttcgttc acttggtatt tcgggggtga ttaagaagga
      961 gtgtacctat catgtagtaa aaaaggattt gttttcgttc cattatcatt ttcatattat
     1021 tgttgattca ttggaagctg caaaatatgt agtagcccaa tggaagaaat tgcatggtag
     1081 tacggttgct gatgcccgtt ttcagaaata taagaagata gaggattttg aaaatgcagc
     1141 gatagaggtt tttaagtatg cttcaaaggc ttctgtctca aaatcgaaag gtcgtgacgg
     1201 taaaaaaaga ttcagataaa ttataaggct ttggatatga tttatactgc catgcatggg
     1261 atgcagcgca tgagtagttt cggacagttc cgcaccatga tcggagatga agcgttgaat
     1321 gattttagag atgaggattt ggttcttaat attgagggat tgaatgttga agatggttgt
     1381 tatacttggt atatgtctgt gaaagataag gtggctgatt ggtataatat ggaaactggg
     1441 gaggcattgt gttgttataa ggtcacccgg aaggatgaac ttttgcagga tatttattta
     1501 gatgaggata tttttcctaa tagtgggtag ttgttagttt gttgtattgt tttcttggta
     1561 tggtgtgagt tctatgtatt ctctattcat gaaaggatcg ccaaattttc cacttctgtc
     1621 atagaaggaa aatttgtttt tagttagctc gtctatgtcc cagtaatgtt ctccaccaaa
     1681 ataaatggta ctgaaacttg gatcaccgaa tgaccattgt ccgtagatat tggcttcttt
     1741 tttatttcct tgtttgtcga tttctatatt tgtacgggta tatgttccgt ttttattgaa
     1801 tttgtatgta ccttgccaga cactgccgtt ttcgtctgtt gtttttttac cagcccatgt
     1861 aatatcacaa attaatgaga ttatgctttc ttctccatgg ttgtagtatc cttgtttttc
     1921 aacacatccg gtgtttgaaa taagaaaaag tgatactgtt gaaataagta aagagatatg
     1981 tattattcta ttcatagtta aatatttaat attcaatgca aaaataggag aaattttata
     2041 tttttgggcg aaacctttat ttattaactt taaaaaagga ggatttatga aaaaagtaat
     2101 gtttatgttc atcagtctac tgactgtttt gggtgtttgt tcgtgtaatg ataatgaagt
     2161 aatagaacct gtggttagtg attctgtatc tgatatggag gtcttatctc gttttgttga
     2221 tgtaaatgag attacaaatg aatactattt caatgagaat aagaaaacga gggcgttgtc
     2281 ttatgtaaca ggttcggatt ggcaggattt agaaaaagtt agtcctttga gtattgagaa
     2341 atataagaat aacctgcagg ttttaaatgc tcaagtggca agtgctattt caaatcctaa
     2401 taccgcttat gttgtttttt ctgtaaatgg aaagactttg gttaaaaagg tgaaggagga
     2461 tgctaatttt gatttttcag tatttaggga tgttgtaacg gaaacgaggg ctgttctccc
     2521 ttctttgagt attaatggag gttctcaaag cactaccgga gttttttacg attccagtcg
     2581 tactttaaag atgcaagttg atttgaatgc ttcaatacag aataattatt atttctttga
     2641 agtattaaat cctaatgcta aaccaagtcc ggatgataat ataacgacac ctgaaagtgt
     2701 tgcttttagt ggaactggac cgttatggag taacactttc acttggactt cgtattggga
     2761 tgcaaatgta cctggtcaag gttttaaatg ggagtttaaa ggaaaaggta ctactccttc
     2821 ttttggtttt atagctaatt gcacctttag tcgttaaaaa atgaacggga tttaatttga
     2881 attgcacttc tcaaaaaaga gaagtgcaat tctttttagt gtctttctat cggtgtagcc
     2941 agttaccgtt atctaaagtc ttttgtagtg tattccaaag ttctttaaga aagtttttaa
     3001 agtggatgaa gttctttaag aaagttttta aagtggatgt tatttagcca aattgtagta
     3061 ataccattct gacttttgga gatatctatt ttcacgtttt taacttggta tgattttctc
     3121 ttgtctttat cgtaaaggtt tccagtgtag tatatttcct ttccaataag aagttgtcgg
     3181 atatctttat tttgtattcc catagtttgg agttcctcta tattttcctg tgcattttcc
     3241 atttccggaa aaaggttggt tatgggtttt agtttggatg cttctgcctt tatctgtctg
     3301 tcggttgttt cctgtaccct tcgcatctcg atgttgttgg ttcttaattg tccttctaaa
     3361 ttttgattct tgaatgagag gttataattt tcttttttga gggtttcaat ttctttggct
     3421 tgtcgtttta cttcccctac attaaagacg cttgtaacgg cattaaatac ggtttttccg
     3481 gcttttgcgg cagcttcttt ggcttcgttg atgtgtatgt cggttttcat gctgtttagc
     3541 tctttttgtg ccgtactaag ttccttttgg actgtggtga ttttctcggt tccggcagtg
     3601 tatgccctgt ttagttgctc gatgtctttt tgaagttgtt cagctttctc tgtttccatt
     3661 ttgtttttgt attgcatggc cgacaagtgt ttcttgtctg aagaaactcc acgttccatg
     3721 ttgagacact ctgctgttat agtctgcatc tccgccatgt cgtgtctgtt cagctttaca
     3781 gtttttcctg tatggccgtc cgtccagtca aagatcatgt gcgcatgata gttcggtttc
     3841 catgcttctt cctttccgtc ccatacgttt gcgccttcat ccttatgggt gtagatttgg
     3901 aaggcgtgca ctccaaagcg ttcttccagt ttttcggcca agtcttgaag ctgctggatt
     3961 gtggtttcct cgctgattac tattacccct tcccggattg gggtagcttt cttctgtaat
     4021 ccttgtccgg tggcttcctt gtatttttcc gttatgtccc ggtgtacttc ggcaatggaa
     4081 cattctaccc actgttcgtt gcggtgtgtg agttccggac ggatgtagtc gagctccttg
     4141 cttcttaagt tgtgacgttc cgagctgcct atattgcagg cttccactct gatacatgtc
     4201 tttgccatat ctttaggttt taggtgtgta tgtctgttta gaagatgtgg cgtgaaacgt
     4261 cacatcgcac ggggtcgagg ggacacccct cgcacacaac ccctttaggg gttatagtgt
     4321 gctataacct tttgcaaagg taagccttcc ggacgggatt tgcaagcgct ctgccatgtg
     4381 ttccggatgt gcttgggaac agaagccgga caaaagggaa aaggacacaa ggcacaataa
     4441 aaaatcatcg gtcggggagc gctgcacggc aagggggtgc accaacactc ccgacgagtg
     4501 cagccattga cagggttctc ggtgaaaatg gaaaaaagtt gtttttcctt ttgttattgt
     4561 tataacttta catatatttg tatcgtgata atcaattata aagttataac attatggtaa
     4621 cgaatattat tcagattgga aacagcaagg ggataatact tccttccgaa gtattgaaac
     4681 agttgcgttt gtccttgaaa tcggctgtga gcatttcttt ggacgggaac aatattgtga
     4741 taaaggcaca accacggcag ggatgggcgg aagctgccaa acgtgcccat gagaatgggg
     4801 atgatgagtt gcttatccct gatgtgtttg aggatgaaaa gtttgaggat tggacatggt
     4861 agaacagtat gaagtgtatt gggtagagtt agaccctacc cgtgggggtg aaatggcaaa
     4921 gacacggcca tgtgtagttg tcactccttc agatttgaat atgtacctta caacagtagt
     4981 cattgttccg ataacctcaa cgataagaaa ttatccttac cgggttctgt gttctgtagc
     5041 cgggcgtgaa ggagagatag ccactgatca aattcgcacg gtggataaaa gccggctgaa
     5101 aagaaagatt ggagatttga atttcagtga gataaaaagg ttacgtgaag tgtttcagca
     5161 aatgttctgt gaataatgga aagtacggaa agaaaaatgc aaataagaca ttatgaaacc
     5221 aactgactac atcgaatggg ataacctgaa ggatattcca ttcttcctct gtcaagtagt
     5281 cgaggacaga gaaaaacaag atttggatat ttactatttg ggcaaacgtg tcttgcacga
     5341 ttacgaccat gtggggcact atttgcggac tgccgttatc ttgttccgca gggtaaagag
     5401 ccgcacagca gactgggtaa acctgcgtaa cctttggacg ctgcgcaact gtgtgcgtga
     5461 gaactacaat cacggcatag gaatgaacga ccttattttt ggggagaatt tcgatggaga
     5521 taatctcgat acgcttacac cacttacaaa gaaacgcttt gattttttgt gtaagcggat
     5581 taaggaactt gacccatatg caactattta acactccatt ga
//
