LOCUS       CP101354                3373 bp    DNA     circular BCT 15-AUG-2022
DEFINITION  Salmonella enterica strain s11011 plasmid ps11011_2, complete
            sequence.
ACCESSION   CP101354
VERSION     CP101354.1
DBLINK      BioProject: PRJNA850394
            BioSample: SAMN29636371
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3373)
  AUTHORS   Du,P., Liu,X., Liu,Y., Li,R., Lu,X., Cui,S., Wu,Y., Fanning,S. and
            Bai,L.
  TITLE     Dynamics of Antimicrobial Resistance and Genomic Epidemiology of
            Multidrug-Resistant Salmonella enterica Serovar Indiana ST17 from
            2006 to 2017 in China
  JOURNAL   mSystems, e0025322 (2022) In press
   PUBMED   35861536
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3373)
  AUTHORS   Du,P., Liu,X., Liu,Y., Li,R., Lu,X., Cui,S., Wu,Y., Fanning,S. and
            Bai,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JUL-2022) Institute of Infectious Diseases, Beijing
            Ditan Hospital, Capital Medical University, No.8 jingshundongjie,
            Beijing 100015, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200x
            Sequencing Technology             :: Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/12/2022 17:17:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,857
            CDSs (total)                      :: 4,739
            Genes (coding)                    :: 4,591
            CDSs (with protein)               :: 4,591
            Genes (RNA)                       :: 118
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 58 of 148
            Pseudo Genes (incomplete)         :: 112 of 148
            Pseudo Genes (internal stop)      :: 30 of 148
            Pseudo Genes (multiple problems)  :: 43 of 148
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3373
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="s11011"
                     /host="Homo sapiens"
                     /db_xref="taxon:28901"
                     /plasmid="ps11011_2"
                     /geo_loc_name="China:Henan"
                     /collection_date="2011"
                     /collected_by="State Key Laboratory of Infectious Disease
                     Prevention and Control"
     gene            complement(53..286)
                     /locus_tag="NMV05_24265"
     CDS             complement(53..286)
                     /locus_tag="NMV05_24265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="UUX12668.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHEVTQRNNA
                     ILNERVVILSQQVQRLAGQVDRLSRLFIANNS"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(293..853)
                     /locus_tag="NMV05_24270"
     CDS             complement(293..853)
                     /locus_tag="NMV05_24270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="UUX12669.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKKQLDTLSTTVSMQFSTTEAELSRQQKKLLWRVIKGRILFPALTA
                     LSVTGGIFLGCWGLMEWQESKIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     gene            complement(882..1322)
                     /locus_tag="NMV05_24275"
                     /pseudo=""
     CDS             complement(882..1322)
                     /locus_tag="NMV05_24275"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial on complete genome; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(1531..1854)
                     /locus_tag="NMV05_24280"
     CDS             complement(1531..1854)
                     /locus_tag="NMV05_24280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="UUX12670.1"
                     /translation="MLTIRVTDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     APPLLRHLAAIGNNLNQTARKVNSGQWSSIDRVHVVAALMAIEGELRQLRQAVREQGVR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1918..2109
                     /locus_tag="NMV05_24285"
     CDS             1918..2109
                     /locus_tag="NMV05_24285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="UUX12667.1"
                     /translation="MTKQEKTALNMARFIRNQTLTLLEKLNDLDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          complement(2191..2271)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="86.585"
                     /coverage="93.0"
                     /evalue="4.04e-16"
     Typing          complement(10..1541)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="93.605"
                     /coverage="98.0"
                     /evalue="0.0"
ORIGIN
        1 gccgcgcgtt cctgtacctc atgtctgtac cgggcacgct cctgttcatc ccttagctgt
       61 tgttcgcgat aaataaccga ctcaagcgat ccacttgccc ggctaatctc tgcacctgct
      121 gactcaatat cacgacgcgc tcgttcagta tcgcgttgtt ccgttgcgta acctcgtgca
      181 tcttctgcaa ttccgcgaag gcgctctccc actcgttcag ccgccgcata tagtcctgtt
      241 gcaaatgctc taaggcgttc agcaaatgcc cttccagttc cgtcatactc gtttactccc
      301 tgaccagcct cacggcgttc ttgtcgccca ccgtccaggt gttttcccct ttcaccccgt
      361 ccggcaacac cagaaatttc ccgttctcgc cattgacgaa cgtcaccccc caggtttttg
      421 cctcgagttt cgccagcgtg ttttcctgct ctctgatagt caggatattt ttcgcaatct
      481 tgctttcctg ccactccatc agcccccagc accccaggaa aatcccgccc gtgacgctga
      541 gcgcggtcag cgccggaaac agtatccgcc ctttgatcac ccgccagagc agttttttct
      601 gctgccggga cagttcggcc tctgtggtgc tgaactgcat gctcacggtg gtgctcagcg
      661 tatccagttg ctttttcacg gatgttgtat gttcgctgat agcgtctctg attttctgcc
      721 tgtttaagct caatgccttg tctacagact cttcgagctt cctgaactcg ctgttcagca
      781 tgttctcggt agaagcggct cgctctttca gtttcttctc gaagtctgtt cccatttgta
      841 aaagattgct catacagcgc cccctttagc ctgagattcc gccccccctc cgggtcggca
      901 atactgatgc tgcttttggt tgtcctcacc acctcaaaac ctgccgctgt aagcgcctct
      961 gtgacatcct gacgcgtttt tattgctccg gcatggtaaa gagcctcaag accccgtgta
     1021 atcgcttctg cggcctcctg tttcgctttt ggcagattat ttggcgtgac aagcgtccgt
     1081 ctgttctccg gtgcgttcgg gtcacgcagc ccgtaatgat gattaaccag cgtctgccag
     1141 gcatttatcc tcggcctgtc cgcacggtcg tagtacggct ggaggcgctt accgctctgt
     1201 agctccatgt tcgggatgac aaaattcagt tcgagccgcc ccttatcctg gtgttccacc
     1261 cagagaatgc tgtactggtc tttttcgaga ccgggcataa gaacacgctc aaagctcgtc
     1321 atcactcttt cgcgttcacc cggtggtagc tccttctccg cgaacgacag aacgcctgac
     1381 gtgtatttct tcgaaaatgg cgtggaatca atgagttccc gcacttcttc cgggttaccc
     1441 cggagcaccg ttgcgccttc gcggttacgc tcccgcccca gcaggtaatc gaccgggcca
     1501 cttccaccgc ctttccccct ggcatgaaat ttaactatca tcccgtaccc cctgttccct
     1561 gacagcctgc cgcaactggc gcaattcacc ctcgatggcc atcagtgcgg ccaccacatg
     1621 aacccggtca atcgaagacc actggccgct gttcaccttc cgggctgtct ggttcaggtt
     1681 gttcccgatg gcagccagat gccgcagcaa tggcggtgcc agtgtcggca gttttcctgt
     1741 gcgtgcaacc ggctccccca gacagacccg ccgcatccat tccgccagtc gtttaccctc
     1801 gcagcgttcc agtaaccggg cgtgctcctc atcggtaacc cgtatcgtga gcatcttctc
     1861 gcgtttcatc ggtatcattc cccctaacaa atcccccata caaggagcct taagaccatg
     1921 accaaacagg aaaaaacagc ccttaacatg gctcgcttta tcagaaacca gacgctaacc
     1981 ctgctggaaa aactcaacga tctggacgcg gacgaacagg cagacatctg cgaatcactt
     2041 cacgaccacg ccgacgaact ctaccgcagt tgcctcgcac gcttcggcga tgacggtgaa
     2101 agcaactgaa acatgcagct cccggagacg ttcacagctt gcctgtgagc ggatgccggg
     2161 agcagacaag cccgccaggg cgcgtcagtg cgggtgtcgg ggcgcagccc tgacccagtt
     2221 cacagagcga tagcgatgtg tatactggct ttcctcattt tgcatcggtg cagagtggat
     2281 gggaagtgca ccatgtcagg agtaaaaagc cgcacagatg cgtaaaaaca gcgcgcccga
     2341 taaacaacac acacgcggac actggcacag gcgcgtaagt gcacaatgct tgcctctgtg
     2401 actcttccgc ttcctcgccc actcgctcac tacgttcggt cgctggggct gcggcgagcg
     2461 gtgggatcac tctcgttgtg atgcagatcc gttttttttt ttgcactgga gttatcagga
     2521 gtagcggtgc acatgggatc gtgcgatatg ctggatggtg gaaggtcgga gggaacggca
     2581 acaactcacc cctcccagtg aagggacggg tagtttgccg ctctcgatat gccggacgga
     2641 gccaaggcca tcgatcacgg ggcgcgtcag tggaagaacc cgcgcctgcg tgacgtatgc
     2701 gtcttcgccg caccatctca cccgtcacgc caccacatac cgggaactgc cgccaaggtc
     2761 taactcaacc aatctagccg cgctacatac ggtttttgtg gcaactcatc aggtgtccgc
     2821 tgtcgatgaa actctctgcg ccggtagcgg aactctcacg cgtgcggtcg ccgtcgtcac
     2881 agctccccca accgcaaacg attctcgcaa atacgcaagt atctgcaaaa acaggttttt
     2941 ttcggggttc ctgggagact gtgctgttga aaaactcttg aagaatacag aaggctcatg
     3001 caaactgaat gaactggttt ctgttgtgga tctcaacagt ttccacagga acattgagga
     3061 ggtcagagac ctcaatgaac ccgaaacagc tcgccttcct ggcgagctgt tttcgttcta
     3121 cgcccaccga cgaaagatcg caagtgcaat aacgagattt ttcacgtctt tacgctcaaa
     3181 aagtaaaaaa accatgtttt cccctggctg aatccccaaa aacgcgtgaa atgcgttttc
     3241 aggatgttgc atagctatgc acaaatacgg cacacgattt gtttcgctcg ccccagccgt
     3301 cgaacgggtc aaaatggcaa gatttcgtca cttctccggt cacatctcca ttgatggccc
     3361 actccgaacc cgt
//
