LOCUS       CP101347                1702 bp    DNA     linear   BCT 15-AUG-2022
DEFINITION  Salmonella enterica strain s15D023 plasmid ps15D023_8.
ACCESSION   CP101347
VERSION     CP101347.1
DBLINK      BioProject: PRJNA850394
            BioSample: SAMN29636373
KEYWORDS    .
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1702)
  AUTHORS   Du,P., Liu,X., Liu,Y., Li,R., Lu,X., Cui,S., Wu,Y., Fanning,S. and
            Bai,L.
  TITLE     Dynamics of Antimicrobial Resistance and Genomic Epidemiology of
            Multidrug-Resistant Salmonella enterica Serovar Indiana ST17 from
            2006 to 2017 in China
  JOURNAL   mSystems, e0025322 (2022) In press
   PUBMED   35861536
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 1702)
  AUTHORS   Du,P., Liu,X., Liu,Y., Li,R., Lu,X., Cui,S., Wu,Y., Fanning,S. and
            Bai,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JUL-2022) Institute of Infectious Diseases, Beijing
            Ditan Hospital, Capital Medical University, No.8 jingshundongjie,
            Beijing 100015, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200x
            Sequencing Technology             :: Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/12/2022 17:12:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 4,880
            CDSs (total)                      :: 4,768
            Genes (coding)                    :: 4,619
            CDSs (with protein)               :: 4,619
            Genes (RNA)                       :: 112
            rRNAs                             :: 6, 6, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 81
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 149
            CDSs (without protein)            :: 149
            Pseudo Genes (ambiguous residues) :: 0 of 149
            Pseudo Genes (frameshifted)       :: 61 of 149
            Pseudo Genes (incomplete)         :: 110 of 149
            Pseudo Genes (internal stop)      :: 31 of 149
            Pseudo Genes (multiple problems)  :: 44 of 149
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1702
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="s15D023"
                     /host="Homo sapiens"
                     /db_xref="taxon:28901"
                     /plasmid="ps15D023_8"
                     /geo_loc_name="China:Henan"
                     /collection_date="2013"
                     /collected_by="State Key Laboratory of Infectious Disease
                     Prevention and Control"
     gene            complement(27..>1702)
                     /locus_tag="NMV07_24400"
     rRNA            complement(27..>1702)
                     /locus_tag="NMV07_24400"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
                     /name="23S ribosomal RNA"
ORIGIN
        1 atccgccaaa acatcttcgg cgttgtaagg ttaagcctca cggttcatta gtaccggtta
       61 gctcaacgca tcgctgcgct tacacacccg gcctatcaac gtcgtcgtct tcaacgttcc
      121 ttcaggagac tttaagtctc agggagaact catctcgggg caagtttcgt gcttagatgc
      181 tttcagcact tatctcttcc gcatttagct accgggcagt gccattggca tgacaacccg
      241 aacaccagtg atgcgtccac tccggtcctc tcgtactagg agcagccccc ctcagttctc
      301 cagcgcccac ggcagatagg gaccgaactg tctcacgacg ttctaaaccc agctcgcgta
      361 ccactttaaa tggcgaacag ccataccctt gggacctact tcagccccag gatgtgatga
      421 gccgacatcg aggtgccaaa caccgccgtc gatatgaact cttgggcggt atcagcctgt
      481 tatccccgga gtacctttta tccgttgagc gatggccctt ccattcagaa ccaccggatc
      541 actatgacct gctttcgcac ctgctcgcgc cgtcacgctc gcagtcaagc tggcttatgc
      601 cattgcacta acctcctgat gtccgaccag gattagccaa ccttcgtgct cctccgttac
      661 tctttaggag gagaccgccc cagtcaaact acccaccaga cactgtccgc aacccggatt
      721 acgggtccac gttagaacat caaacattaa agggtggtat ttcaaggtcg gctccatgca
      781 gactggcgtc cacacttcaa agcctcccac ctatcctaca catcaaggct caatgttcag
      841 tgtcaagcta tagtaaaggt tcacggggtc tttccgtctt gccgcgggta cactgcatct
      901 tcacagcgag ttcaatttca ctgagtctcg ggtggagaca gcctggccat cattacgcca
      961 ttcgtgcagg tcggaactta cccgacaagg aatttcgcta ccttaggacc gttatagtta
     1021 cggccgccgt ttaccggggc ttcgatcagg agcttcgctt gcgctgaccc catcaattaa
     1081 ccttccggca ccgggcaggc gtcacaccgt atacgtccac tttcgtgttt gcacagtgct
     1141 gtgtttttaa taaacagttg cagccagctg gtatcttcga ctgacttcag ctccatgagt
     1201 aaatcacttc acctacatgt cagcgtgcct tctcccgaag ttacggcacc attttgccta
     1261 gttccttcac ccgagttctc tcaagcgcct tggtattctc tacctgacca cctgtgtcgg
     1321 tttggggtac gatttgatgt tacctgatgc ttagaggctt ttcctggaag cagggcattt
     1381 gttgcttcag caccgtagtg cctcgtcgtc acgcctcagt gttaaagtga accggattta
     1441 cctggaacac acacctacac gcttaaaccg ggacaaccgt cgcccggcca acatagcctt
     1501 ctccgtcccc ccttcgcagt aacaccaagt acgggaatat taacccgttt cccatcgact
     1561 acgcctttcg gcctcgcctt aggggtcgac tcaccctgcc ccgattaacg ttggacagga
     1621 acccttggtc ttccggcgag cgggcttttc acccgcttta tcgttactta tgtcagcatt
     1681 cgcacttctg atacctccag ca
//
