LOCUS       CP098978                1547 bp    DNA     circular BCT 13-APR-2023
DEFINITION  Escherichia coli strain RHB46-C17 plasmid unnamed3, complete
            sequence.
ACCESSION   CP098978
VERSION     CP098978.1
DBLINK      BioProject: PRJNA605147
            BioSample: SAMN15488713
KEYWORDS    .
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 1547)
  AUTHORS   Matlock,W.
  TITLE     Plasmid overlap and evolution between Enterobacterales isolates from
            bloodstream infections and non-human compartments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1547)
  AUTHORS   Matlock,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUN-2022) Nuffield Department of Medicine, University
            of Oxford, John Radcliffe Hospital, Oxford OX3 9DU, United Kingdom
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.4
            Assembly Name                     :: RHB46-C17
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 125x
            Sequencing Technology             :: Illumina/Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 06/15/2022 18:00:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
            Genes (total)                     :: 5,185
            CDSs (total)                      :: 5,066
            Genes (coding)                    :: 4,802
            CDSs (with protein)               :: 4,802
            Genes (RNA)                       :: 119
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 264
            CDSs (without protein)            :: 264
            Pseudo Genes (ambiguous residues) :: 0 of 264
            Pseudo Genes (frameshifted)       :: 78 of 264
            Pseudo Genes (incomplete)         :: 199 of 264
            Pseudo Genes (internal stop)      :: 58 of 264
            Pseudo Genes (multiple problems)  :: 58 of 264
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1547
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="RHB46-C17"
                     /isolation_source="Pooled faeces sample collected from
                     floor of poultry farm"
                     /db_xref="taxon:562"
                     /plasmid="unnamed3"
                     /geo_loc_name="United Kingdom"
                     /collection_date="2017"
     Typing          complement(500..850)
                     /name="rep_cluster_2373"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.591"
                     /coverage="81.0"
                     /evalue="2.93e-164"
ORIGIN
        1 cattcacttc cgtgcatagc catgcaggcg cgcagaaatc atcaggcgcg ttttttcacg
       61 atatggacag ggaaaggtgc cggaaacgca gaggacgcgg cagaaacgcg ctgagggcct
      121 ctcagggggt gcgggcaagg gatgttatgg taaataacac ttaatcatta ccaacggagt
      181 tattaaaggt tgcggcgaat acgcccctca cgcacttctg ttattgaaaa agtcatattt
      241 aagctcactt ttttactctg aatataacct gttagagagg attttcttga gatcatccgt
      301 ctgtcgtcgt agtctcttat ccagaaacga aaaaaccacc tggggaggtg gtttttcgaa
      361 ggttcagtaa gctggggaac ttctgaaccg tggtaacagg gtgtacaaga ccgctgccac
      421 caaatttgtc cttccagttt agccgtagtt tggctctaac ttcaagaact ctgcatcagt
      481 aatctcttgt acaccctcta ccaatggctg ctgccagtgg cgttttgtcg tgtctttccg
      541 ggttggactc aagacgatag ttaccgggta aggcgcagcg gtcggactga acggggggtt
      601 cgtgcttaca gtccagcttg gagcgaactg cctacccgga actgagtgtc aggcgtggaa
      661 tgagataaac gcggccataa cagcggaatg acaccggtaa accgaaaggc aggaacagga
      721 gagcgcacga gggagctacc agggggaaac gcctgggatc tttatagtcc tgtcgggttt
      781 cgccaccgct gatttgagcg tcagatttcg tgatgcttgt caggggggcg gagcctatgg
      841 aaaaccggca gcccttaagt ctcttctcac acttcatacc tccacgccct ttgattgatc
      901 ccgtaacgct cgccgcagag tcatgaccga acgcagtgag cgaatgaccg aggaagcgta
      961 atttctccgg tggctgctta ggctcctgtc gctccgtact atcatctttc accacttacg
     1021 ttttctgcac gtattgatgc ggacaggaaa tgtcttgtca ttaccgccgc tttgcgccag
     1081 tgacaaaatc agcgggacaa gatgtgtttt tggagtaccg ccgacactcc agaatgtttc
     1141 atcaggcgcc gcccgatacg ctgagtttcg tgcgtacgaa atttctctgc tgttgagatc
     1201 tagggcagga ttcgcaaagt gctggcgttt gtacccaccg gaagctgccg cgcctggcgg
     1261 cttggccaac gcctcacggc cgcacagtca actgtgcacc cgttcaccgt taccagatcc
     1321 cctgattccg gccgggcctg cctgcactgg ccaaagccct aaaactgcgc aatccgcagc
     1381 gcgggggcag ttgataacca ctttttactg tcatacttat ttgccggctc tctgatcggt
     1441 accggctgac tgtttgtgca aattttgtcg gacatcctga ccctcgatgt ccgttttttt
     1501 tgttcaaaat tcgcctttag tgccagcatt cgtccgaaac cggccgc
//
